Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0752

Experiment: m.b. nitrite 30 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0751 and Echvi_0752 are separated by 12 nucleotidesEchvi_0752 and Echvi_0753 overlap by 4 nucleotides Echvi_0751: Echvi_0751 - glycogen debranching enzyme, archaeal type, putative, at 840,788 to 842,704 _0751 Echvi_0752: Echvi_0752 - Glycosyltransferase, at 842,717 to 844,006 _0752 Echvi_0753: Echvi_0753 - Alpha-amylase/alpha-mannosidase, at 844,003 to 845,214 _0753 Position (kb) 842 843 844 845Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 841.809 kb on + strand, within Echvi_0751at 841.828 kb on + strand, within Echvi_0751at 841.828 kb on + strand, within Echvi_0751at 841.880 kb on + strand, within Echvi_0751at 841.881 kb on - strand, within Echvi_0751at 841.922 kb on + strand, within Echvi_0751at 841.976 kb on - strand, within Echvi_0751at 841.985 kb on - strand, within Echvi_0751at 842.080 kb on - strand, within Echvi_0751at 842.111 kb on + strand, within Echvi_0751at 842.126 kb on + strand, within Echvi_0751at 842.130 kb on - strand, within Echvi_0751at 842.280 kb on + strand, within Echvi_0751at 842.281 kb on - strand, within Echvi_0751at 842.281 kb on - strand, within Echvi_0751at 842.281 kb on - strand, within Echvi_0751at 842.281 kb on - strand, within Echvi_0751at 842.281 kb on - strand, within Echvi_0751at 842.281 kb on - strand, within Echvi_0751at 842.355 kb on - strand, within Echvi_0751at 842.355 kb on - strand, within Echvi_0751at 842.355 kb on - strand, within Echvi_0751at 842.355 kb on - strand, within Echvi_0751at 842.407 kb on + strand, within Echvi_0751at 842.407 kb on + strand, within Echvi_0751at 842.407 kb on + strand, within Echvi_0751at 842.408 kb on - strand, within Echvi_0751at 842.408 kb on - strand, within Echvi_0751at 842.408 kb on - strand, within Echvi_0751at 842.414 kb on + strand, within Echvi_0751at 842.418 kb on - strand, within Echvi_0751at 842.450 kb on + strand, within Echvi_0751at 842.607 kb on - strandat 842.688 kb on + strandat 842.689 kb on - strandat 842.693 kb on - strandat 842.693 kb on - strandat 842.702 kb on + strandat 842.724 kb on + strandat 842.724 kb on + strandat 842.724 kb on + strandat 842.724 kb on + strandat 842.724 kb on + strandat 842.725 kb on - strandat 842.725 kb on - strandat 842.725 kb on - strandat 842.725 kb on - strandat 842.756 kb on - strandat 842.844 kb on + strandat 842.845 kb on - strandat 842.845 kb on - strandat 842.845 kb on - strandat 842.846 kb on + strand, within Echvi_0752at 842.846 kb on + strand, within Echvi_0752at 842.865 kb on + strand, within Echvi_0752at 842.866 kb on - strand, within Echvi_0752at 842.892 kb on + strand, within Echvi_0752at 842.903 kb on + strand, within Echvi_0752at 842.904 kb on - strand, within Echvi_0752at 842.905 kb on + strand, within Echvi_0752at 842.905 kb on + strand, within Echvi_0752at 842.906 kb on - strand, within Echvi_0752at 842.942 kb on - strand, within Echvi_0752at 842.942 kb on - strand, within Echvi_0752at 842.945 kb on + strand, within Echvi_0752at 842.945 kb on + strand, within Echvi_0752at 842.946 kb on - strand, within Echvi_0752at 842.946 kb on - strand, within Echvi_0752at 842.955 kb on + strand, within Echvi_0752at 842.956 kb on - strand, within Echvi_0752at 842.976 kb on - strand, within Echvi_0752at 842.993 kb on + strand, within Echvi_0752at 843.011 kb on - strand, within Echvi_0752at 843.080 kb on + strand, within Echvi_0752at 843.081 kb on - strand, within Echvi_0752at 843.198 kb on + strand, within Echvi_0752at 843.198 kb on + strand, within Echvi_0752at 843.232 kb on - strand, within Echvi_0752at 843.234 kb on + strand, within Echvi_0752at 843.234 kb on + strand, within Echvi_0752at 843.234 kb on + strand, within Echvi_0752at 843.234 kb on + strand, within Echvi_0752at 843.235 kb on - strand, within Echvi_0752at 843.235 kb on - strand, within Echvi_0752at 843.290 kb on + strand, within Echvi_0752at 843.290 kb on + strand, within Echvi_0752at 843.291 kb on - strand, within Echvi_0752at 843.291 kb on - strand, within Echvi_0752at 843.326 kb on - strand, within Echvi_0752at 843.471 kb on + strand, within Echvi_0752at 843.472 kb on - strand, within Echvi_0752at 843.472 kb on - strand, within Echvi_0752at 843.515 kb on + strand, within Echvi_0752at 843.515 kb on + strand, within Echvi_0752at 843.515 kb on + strand, within Echvi_0752at 843.561 kb on + strand, within Echvi_0752at 843.561 kb on + strand, within Echvi_0752at 843.702 kb on + strand, within Echvi_0752at 843.702 kb on + strand, within Echvi_0752at 843.703 kb on - strand, within Echvi_0752at 843.703 kb on - strand, within Echvi_0752at 843.703 kb on - strand, within Echvi_0752at 843.703 kb on - strand, within Echvi_0752at 843.703 kb on - strand, within Echvi_0752at 843.704 kb on + strand, within Echvi_0752at 843.704 kb on + strand, within Echvi_0752at 843.705 kb on - strand, within Echvi_0752at 843.705 kb on - strand, within Echvi_0752at 843.705 kb on - strand, within Echvi_0752at 843.705 kb on - strand, within Echvi_0752at 843.761 kb on + strand, within Echvi_0752at 843.767 kb on - strand, within Echvi_0752at 843.843 kb on + strand, within Echvi_0752at 843.844 kb on - strand, within Echvi_0752at 843.844 kb on - strand, within Echvi_0752at 843.864 kb on + strand, within Echvi_0752at 843.864 kb on + strand, within Echvi_0752at 843.864 kb on + strand, within Echvi_0752at 843.865 kb on - strand, within Echvi_0752at 843.975 kb on - strandat 843.993 kb on + strandat 843.994 kb on - strandat 843.994 kb on - strandat 844.021 kb on + strandat 844.130 kb on + strand, within Echvi_0753at 844.200 kb on + strand, within Echvi_0753at 844.201 kb on - strand, within Echvi_0753at 844.227 kb on - strand, within Echvi_0753at 844.231 kb on - strand, within Echvi_0753at 844.231 kb on - strand, within Echvi_0753at 844.249 kb on + strand, within Echvi_0753at 844.311 kb on - strand, within Echvi_0753at 844.321 kb on + strand, within Echvi_0753at 844.321 kb on + strand, within Echvi_0753at 844.321 kb on + strand, within Echvi_0753at 844.321 kb on + strand, within Echvi_0753at 844.321 kb on + strand, within Echvi_0753at 844.322 kb on - strand, within Echvi_0753at 844.416 kb on + strand, within Echvi_0753at 844.416 kb on + strand, within Echvi_0753at 844.417 kb on - strand, within Echvi_0753at 844.427 kb on + strand, within Echvi_0753at 844.521 kb on + strand, within Echvi_0753at 844.521 kb on + strand, within Echvi_0753at 844.546 kb on + strand, within Echvi_0753at 844.546 kb on + strand, within Echvi_0753at 844.546 kb on + strand, within Echvi_0753at 844.546 kb on + strand, within Echvi_0753at 844.546 kb on + strand, within Echvi_0753at 844.547 kb on - strand, within Echvi_0753at 844.547 kb on - strand, within Echvi_0753at 844.547 kb on - strand, within Echvi_0753at 844.547 kb on - strand, within Echvi_0753at 844.553 kb on - strand, within Echvi_0753at 844.660 kb on - strand, within Echvi_0753at 844.662 kb on + strand, within Echvi_0753at 844.663 kb on - strand, within Echvi_0753at 844.722 kb on - strand, within Echvi_0753at 844.725 kb on + strand, within Echvi_0753at 844.732 kb on + strand, within Echvi_0753at 844.733 kb on - strand, within Echvi_0753at 844.877 kb on + strand, within Echvi_0753

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 30 mM
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841,809 + Echvi_0751 0.53 -2.2
841,828 + Echvi_0751 0.54 -0.6
841,828 + Echvi_0751 0.54 -0.8
841,880 + Echvi_0751 0.57 -3.5
841,881 - Echvi_0751 0.57 -0.7
841,922 + Echvi_0751 0.59 -1.1
841,976 - Echvi_0751 0.62 -0.4
841,985 - Echvi_0751 0.62 +0.2
842,080 - Echvi_0751 0.67 +0.2
842,111 + Echvi_0751 0.69 -0.4
842,126 + Echvi_0751 0.70 -0.7
842,130 - Echvi_0751 0.70 -0.3
842,280 + Echvi_0751 0.78 -1.6
842,281 - Echvi_0751 0.78 -0.8
842,281 - Echvi_0751 0.78 -1.6
842,281 - Echvi_0751 0.78 +0.8
842,281 - Echvi_0751 0.78 -1.0
842,281 - Echvi_0751 0.78 -2.5
842,281 - Echvi_0751 0.78 -0.7
842,355 - Echvi_0751 0.82 -0.2
842,355 - Echvi_0751 0.82 -0.4
842,355 - Echvi_0751 0.82 -1.5
842,355 - Echvi_0751 0.82 -1.1
842,407 + Echvi_0751 0.84 -2.8
842,407 + Echvi_0751 0.84 -1.8
842,407 + Echvi_0751 0.84 -2.0
842,408 - Echvi_0751 0.85 +0.4
842,408 - Echvi_0751 0.85 +1.1
842,408 - Echvi_0751 0.85 +1.0
842,414 + Echvi_0751 0.85 -2.6
842,418 - Echvi_0751 0.85 +0.9
842,450 + Echvi_0751 0.87 -2.2
842,607 - +0.8
842,688 + -2.4
842,689 - +1.6
842,693 - -0.3
842,693 - +1.3
842,702 + -0.9
842,724 + -0.3
842,724 + -0.3
842,724 + -1.6
842,724 + +1.0
842,724 + +1.1
842,725 - +0.3
842,725 - +0.3
842,725 - -2.0
842,725 - +0.6
842,756 - +0.2
842,844 + -0.9
842,845 - -1.0
842,845 - +0.4
842,845 - -0.1
842,846 + Echvi_0752 0.10 -0.3
842,846 + Echvi_0752 0.10 +1.0
842,865 + Echvi_0752 0.11 -2.6
842,866 - Echvi_0752 0.12 +0.0
842,892 + Echvi_0752 0.14 +0.4
842,903 + Echvi_0752 0.14 +1.1
842,904 - Echvi_0752 0.14 +0.4
842,905 + Echvi_0752 0.15 +1.4
842,905 + Echvi_0752 0.15 -0.4
842,906 - Echvi_0752 0.15 -0.6
842,942 - Echvi_0752 0.17 -0.3
842,942 - Echvi_0752 0.17 -0.9
842,945 + Echvi_0752 0.18 -0.3
842,945 + Echvi_0752 0.18 -1.8
842,946 - Echvi_0752 0.18 +0.8
842,946 - Echvi_0752 0.18 -0.1
842,955 + Echvi_0752 0.18 +1.0
842,956 - Echvi_0752 0.19 +0.5
842,976 - Echvi_0752 0.20 -0.1
842,993 + Echvi_0752 0.21 -0.7
843,011 - Echvi_0752 0.23 -0.4
843,080 + Echvi_0752 0.28 -2.1
843,081 - Echvi_0752 0.28 -0.0
843,198 + Echvi_0752 0.37 +0.3
843,198 + Echvi_0752 0.37 +0.5
843,232 - Echvi_0752 0.40 +0.6
843,234 + Echvi_0752 0.40 -0.1
843,234 + Echvi_0752 0.40 -2.2
843,234 + Echvi_0752 0.40 +1.4
843,234 + Echvi_0752 0.40 -0.6
843,235 - Echvi_0752 0.40 -1.4
843,235 - Echvi_0752 0.40 -0.7
843,290 + Echvi_0752 0.44 +0.8
843,290 + Echvi_0752 0.44 -1.1
843,291 - Echvi_0752 0.44 -0.6
843,291 - Echvi_0752 0.44 -0.3
843,326 - Echvi_0752 0.47 +0.9
843,471 + Echvi_0752 0.58 -0.9
843,472 - Echvi_0752 0.59 +0.2
843,472 - Echvi_0752 0.59 +0.1
843,515 + Echvi_0752 0.62 +0.6
843,515 + Echvi_0752 0.62 +0.0
843,515 + Echvi_0752 0.62 -0.9
843,561 + Echvi_0752 0.65 -0.6
843,561 + Echvi_0752 0.65 +0.8
843,702 + Echvi_0752 0.76 -0.2
843,702 + Echvi_0752 0.76 -0.5
843,703 - Echvi_0752 0.76 +0.9
843,703 - Echvi_0752 0.76 -0.6
843,703 - Echvi_0752 0.76 +0.1
843,703 - Echvi_0752 0.76 -1.1
843,703 - Echvi_0752 0.76 -0.2
843,704 + Echvi_0752 0.77 -0.0
843,704 + Echvi_0752 0.77 +0.2
843,705 - Echvi_0752 0.77 -1.8
843,705 - Echvi_0752 0.77 -0.6
843,705 - Echvi_0752 0.77 -0.8
843,705 - Echvi_0752 0.77 -2.0
843,761 + Echvi_0752 0.81 -0.9
843,767 - Echvi_0752 0.81 -0.0
843,843 + Echvi_0752 0.87 -0.9
843,844 - Echvi_0752 0.87 -0.3
843,844 - Echvi_0752 0.87 -0.4
843,864 + Echvi_0752 0.89 -0.4
843,864 + Echvi_0752 0.89 +0.5
843,864 + Echvi_0752 0.89 -0.5
843,865 - Echvi_0752 0.89 +1.2
843,975 - -0.2
843,993 + +0.2
843,994 - -1.6
843,994 - +0.9
844,021 + -1.1
844,130 + Echvi_0753 0.10 -0.8
844,200 + Echvi_0753 0.16 +1.9
844,201 - Echvi_0753 0.16 -2.0
844,227 - Echvi_0753 0.18 -1.6
844,231 - Echvi_0753 0.19 -1.0
844,231 - Echvi_0753 0.19 -0.4
844,249 + Echvi_0753 0.20 -0.9
844,311 - Echvi_0753 0.25 +0.6
844,321 + Echvi_0753 0.26 +1.2
844,321 + Echvi_0753 0.26 -1.4
844,321 + Echvi_0753 0.26 +1.1
844,321 + Echvi_0753 0.26 -0.6
844,321 + Echvi_0753 0.26 -1.1
844,322 - Echvi_0753 0.26 -0.4
844,416 + Echvi_0753 0.34 +0.4
844,416 + Echvi_0753 0.34 +1.2
844,417 - Echvi_0753 0.34 +0.3
844,427 + Echvi_0753 0.35 +0.6
844,521 + Echvi_0753 0.43 +0.1
844,521 + Echvi_0753 0.43 +0.2
844,546 + Echvi_0753 0.45 +0.1
844,546 + Echvi_0753 0.45 -1.0
844,546 + Echvi_0753 0.45 +0.5
844,546 + Echvi_0753 0.45 -0.5
844,546 + Echvi_0753 0.45 +1.5
844,547 - Echvi_0753 0.45 -0.5
844,547 - Echvi_0753 0.45 +0.2
844,547 - Echvi_0753 0.45 +0.6
844,547 - Echvi_0753 0.45 +0.3
844,553 - Echvi_0753 0.45 -0.4
844,660 - Echvi_0753 0.54 +0.7
844,662 + Echvi_0753 0.54 +0.5
844,663 - Echvi_0753 0.54 +0.6
844,722 - Echvi_0753 0.59 +1.3
844,725 + Echvi_0753 0.60 +0.9
844,732 + Echvi_0753 0.60 -1.0
844,733 - Echvi_0753 0.60 -0.7
844,877 + Echvi_0753 0.72 -0.1

Or see this region's nucleotide sequence