Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0628

Experiment: m.b. nitrite 30 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0627 and Echvi_0628 are separated by 50 nucleotidesEchvi_0628 and Echvi_0629 are separated by 25 nucleotides Echvi_0627: Echvi_0627 - hypothetical protein, at 704,731 to 706,461 _0627 Echvi_0628: Echvi_0628 - putative oxygen-independent coproporphyrinogen III oxidase, at 706,512 to 707,636 _0628 Echvi_0629: Echvi_0629 - Protein of unknown function (DUF721)., at 707,662 to 707,976 _0629 Position (kb) 706 707 708Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 705.529 kb on + strand, within Echvi_0627at 705.530 kb on - strand, within Echvi_0627at 705.530 kb on - strand, within Echvi_0627at 705.565 kb on + strand, within Echvi_0627at 705.584 kb on + strand, within Echvi_0627at 705.585 kb on - strand, within Echvi_0627at 705.614 kb on + strand, within Echvi_0627at 705.615 kb on - strand, within Echvi_0627at 705.641 kb on + strand, within Echvi_0627at 705.641 kb on + strand, within Echvi_0627at 705.642 kb on - strand, within Echvi_0627at 705.678 kb on + strand, within Echvi_0627at 705.711 kb on + strand, within Echvi_0627at 705.714 kb on + strand, within Echvi_0627at 705.714 kb on + strand, within Echvi_0627at 705.715 kb on - strand, within Echvi_0627at 705.755 kb on + strand, within Echvi_0627at 705.756 kb on - strand, within Echvi_0627at 705.808 kb on - strand, within Echvi_0627at 705.809 kb on + strand, within Echvi_0627at 705.810 kb on - strand, within Echvi_0627at 705.810 kb on - strand, within Echvi_0627at 705.810 kb on - strand, within Echvi_0627at 705.810 kb on - strand, within Echvi_0627at 705.810 kb on - strand, within Echvi_0627at 705.831 kb on + strand, within Echvi_0627at 705.831 kb on + strand, within Echvi_0627at 705.831 kb on + strand, within Echvi_0627at 705.832 kb on - strand, within Echvi_0627at 705.832 kb on - strand, within Echvi_0627at 705.832 kb on - strand, within Echvi_0627at 705.967 kb on + strand, within Echvi_0627at 706.015 kb on - strand, within Echvi_0627at 706.015 kb on - strand, within Echvi_0627at 706.079 kb on - strand, within Echvi_0627at 706.087 kb on + strand, within Echvi_0627at 706.087 kb on + strand, within Echvi_0627at 706.087 kb on + strand, within Echvi_0627at 706.087 kb on + strand, within Echvi_0627at 706.087 kb on + strand, within Echvi_0627at 706.087 kb on + strand, within Echvi_0627at 706.088 kb on - strand, within Echvi_0627at 706.228 kb on - strand, within Echvi_0627at 706.228 kb on - strand, within Echvi_0627at 706.344 kb on + strandat 706.388 kb on + strandat 706.388 kb on + strandat 706.388 kb on + strandat 706.414 kb on - strandat 706.441 kb on + strandat 706.441 kb on + strandat 706.441 kb on + strandat 706.444 kb on - strandat 706.444 kb on - strandat 706.522 kb on + strandat 706.522 kb on + strandat 706.522 kb on + strandat 706.522 kb on + strandat 706.522 kb on + strandat 706.522 kb on + strandat 706.523 kb on - strandat 706.523 kb on - strandat 706.523 kb on - strandat 706.523 kb on - strandat 706.524 kb on + strandat 706.524 kb on + strandat 706.525 kb on - strandat 706.525 kb on - strandat 706.525 kb on - strandat 706.526 kb on + strandat 706.526 kb on + strandat 706.527 kb on - strandat 706.532 kb on + strandat 706.647 kb on + strand, within Echvi_0628at 706.819 kb on + strand, within Echvi_0628at 706.819 kb on + strand, within Echvi_0628at 706.820 kb on - strand, within Echvi_0628at 706.820 kb on - strand, within Echvi_0628at 706.885 kb on + strand, within Echvi_0628at 706.896 kb on + strand, within Echvi_0628at 706.899 kb on - strand, within Echvi_0628at 706.987 kb on - strand, within Echvi_0628at 707.070 kb on + strand, within Echvi_0628at 707.070 kb on + strand, within Echvi_0628at 707.083 kb on + strand, within Echvi_0628at 707.083 kb on + strand, within Echvi_0628at 707.083 kb on + strand, within Echvi_0628at 707.084 kb on - strand, within Echvi_0628at 707.084 kb on - strand, within Echvi_0628at 707.199 kb on + strand, within Echvi_0628at 707.262 kb on + strand, within Echvi_0628at 707.262 kb on + strand, within Echvi_0628at 707.273 kb on + strand, within Echvi_0628at 707.273 kb on + strand, within Echvi_0628at 707.274 kb on - strand, within Echvi_0628at 707.274 kb on - strand, within Echvi_0628at 707.274 kb on - strand, within Echvi_0628at 707.356 kb on - strand, within Echvi_0628at 707.438 kb on + strand, within Echvi_0628at 707.438 kb on + strand, within Echvi_0628at 707.438 kb on + strand, within Echvi_0628at 707.479 kb on + strand, within Echvi_0628at 707.497 kb on + strand, within Echvi_0628at 707.498 kb on - strand, within Echvi_0628at 707.510 kb on + strand, within Echvi_0628at 707.610 kb on + strandat 707.610 kb on + strandat 707.610 kb on + strandat 707.610 kb on + strandat 707.610 kb on + strandat 707.611 kb on - strandat 707.611 kb on - strandat 707.612 kb on + strandat 707.612 kb on + strandat 707.612 kb on + strandat 707.612 kb on + strandat 707.613 kb on - strandat 707.613 kb on - strandat 707.641 kb on + strandat 707.641 kb on + strandat 707.641 kb on + strandat 707.649 kb on - strandat 707.977 kb on + strandat 707.978 kb on - strandat 708.185 kb on + strandat 708.186 kb on - strandat 708.312 kb on + strandat 708.312 kb on + strandat 708.320 kb on - strandat 708.320 kb on - strandat 708.386 kb on + strandat 708.405 kb on - strandat 708.500 kb on + strandat 708.506 kb on + strandat 708.593 kb on - strandat 708.593 kb on - strandat 708.596 kb on + strandat 708.619 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 30 mM
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705,529 + Echvi_0627 0.46 -0.5
705,530 - Echvi_0627 0.46 +0.7
705,530 - Echvi_0627 0.46 -0.7
705,565 + Echvi_0627 0.48 +0.8
705,584 + Echvi_0627 0.49 +0.3
705,585 - Echvi_0627 0.49 +0.5
705,614 + Echvi_0627 0.51 -2.4
705,615 - Echvi_0627 0.51 -0.9
705,641 + Echvi_0627 0.53 -2.7
705,641 + Echvi_0627 0.53 -1.9
705,642 - Echvi_0627 0.53 +0.0
705,678 + Echvi_0627 0.55 +0.8
705,711 + Echvi_0627 0.57 +0.7
705,714 + Echvi_0627 0.57 +1.5
705,714 + Echvi_0627 0.57 +0.1
705,715 - Echvi_0627 0.57 -0.3
705,755 + Echvi_0627 0.59 -1.0
705,756 - Echvi_0627 0.59 -2.4
705,808 - Echvi_0627 0.62 +1.4
705,809 + Echvi_0627 0.62 +0.7
705,810 - Echvi_0627 0.62 +0.6
705,810 - Echvi_0627 0.62 +0.1
705,810 - Echvi_0627 0.62 -0.3
705,810 - Echvi_0627 0.62 -2.3
705,810 - Echvi_0627 0.62 -0.3
705,831 + Echvi_0627 0.64 -0.3
705,831 + Echvi_0627 0.64 -1.8
705,831 + Echvi_0627 0.64 -1.8
705,832 - Echvi_0627 0.64 +2.6
705,832 - Echvi_0627 0.64 -0.9
705,832 - Echvi_0627 0.64 -1.9
705,967 + Echvi_0627 0.71 +0.3
706,015 - Echvi_0627 0.74 -0.4
706,015 - Echvi_0627 0.74 -0.4
706,079 - Echvi_0627 0.78 -0.5
706,087 + Echvi_0627 0.78 +0.9
706,087 + Echvi_0627 0.78 -1.0
706,087 + Echvi_0627 0.78 -1.8
706,087 + Echvi_0627 0.78 -0.2
706,087 + Echvi_0627 0.78 +0.4
706,087 + Echvi_0627 0.78 +0.1
706,088 - Echvi_0627 0.78 +0.2
706,228 - Echvi_0627 0.86 -0.2
706,228 - Echvi_0627 0.86 -1.3
706,344 + +1.1
706,388 + +0.6
706,388 + -0.4
706,388 + -0.5
706,414 - -1.4
706,441 + -0.3
706,441 + -0.1
706,441 + +0.4
706,444 - +1.3
706,444 - +0.3
706,522 + -0.1
706,522 + +0.3
706,522 + +0.7
706,522 + -0.8
706,522 + +0.4
706,522 + +0.7
706,523 - -1.8
706,523 - +0.4
706,523 - +1.1
706,523 - +1.5
706,524 + +0.4
706,524 + -0.4
706,525 - +1.0
706,525 - +1.6
706,525 - -0.5
706,526 + +0.1
706,526 + -0.2
706,527 - -1.1
706,532 + -1.2
706,647 + Echvi_0628 0.12 -0.3
706,819 + Echvi_0628 0.27 +0.2
706,819 + Echvi_0628 0.27 -2.4
706,820 - Echvi_0628 0.27 -0.8
706,820 - Echvi_0628 0.27 +0.4
706,885 + Echvi_0628 0.33 -0.3
706,896 + Echvi_0628 0.34 -0.4
706,899 - Echvi_0628 0.34 -0.5
706,987 - Echvi_0628 0.42 -1.1
707,070 + Echvi_0628 0.50 -0.3
707,070 + Echvi_0628 0.50 -3.0
707,083 + Echvi_0628 0.51 -0.6
707,083 + Echvi_0628 0.51 -1.4
707,083 + Echvi_0628 0.51 +1.1
707,084 - Echvi_0628 0.51 +0.2
707,084 - Echvi_0628 0.51 -0.2
707,199 + Echvi_0628 0.61 -1.8
707,262 + Echvi_0628 0.67 -1.3
707,262 + Echvi_0628 0.67 +0.2
707,273 + Echvi_0628 0.68 +1.7
707,273 + Echvi_0628 0.68 -0.7
707,274 - Echvi_0628 0.68 -0.1
707,274 - Echvi_0628 0.68 -1.2
707,274 - Echvi_0628 0.68 -2.4
707,356 - Echvi_0628 0.75 -0.7
707,438 + Echvi_0628 0.82 -0.6
707,438 + Echvi_0628 0.82 -2.2
707,438 + Echvi_0628 0.82 -0.9
707,479 + Echvi_0628 0.86 -1.1
707,497 + Echvi_0628 0.88 -0.9
707,498 - Echvi_0628 0.88 -0.2
707,510 + Echvi_0628 0.89 -0.6
707,610 + +0.3
707,610 + +1.1
707,610 + -0.3
707,610 + -1.0
707,610 + +0.7
707,611 - -0.4
707,611 - +1.1
707,612 + -0.3
707,612 + -1.0
707,612 + -1.3
707,612 + +1.9
707,613 - +0.3
707,613 - +0.1
707,641 + +0.1
707,641 + -2.4
707,641 + +0.2
707,649 - -1.2
707,977 + +0.6
707,978 - +0.6
708,185 + -0.7
708,186 - +0.4
708,312 + -0.6
708,312 + -1.6
708,320 - +1.1
708,320 - +1.0
708,386 + -1.1
708,405 - +1.2
708,500 + +0.2
708,506 + +1.0
708,593 - -0.6
708,593 - -0.0
708,596 + -0.5
708,619 - -0.7

Or see this region's nucleotide sequence