Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0321

Experiment: m.b. nitrite 30 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0320 and Echvi_0321 are separated by 169 nucleotidesEchvi_0321 and Echvi_0322 overlap by 26 nucleotides Echvi_0320: Echvi_0320 - Uncharacterized protein conserved in bacteria, at 333,561 to 334,484 _0320 Echvi_0321: Echvi_0321 - Glycerol-3-phosphate O-acyltransferase, at 334,654 to 336,354 _0321 Echvi_0322: Echvi_0322 - Glycerol-3-phosphate dehydrogenase, at 336,329 to 337,393 _0322 Position (kb) 334 335 336 337Strain fitness (log2 ratio) -2 -1 0 1 2 3at 333.736 kb on + strand, within Echvi_0320at 333.736 kb on + strand, within Echvi_0320at 333.736 kb on + strand, within Echvi_0320at 333.736 kb on + strand, within Echvi_0320at 333.736 kb on + strand, within Echvi_0320at 333.736 kb on + strandat 333.737 kb on - strand, within Echvi_0320at 333.737 kb on - strand, within Echvi_0320at 333.737 kb on - strand, within Echvi_0320at 333.761 kb on + strand, within Echvi_0320at 333.761 kb on + strand, within Echvi_0320at 333.761 kb on + strand, within Echvi_0320at 333.761 kb on + strand, within Echvi_0320at 333.772 kb on + strand, within Echvi_0320at 333.805 kb on + strand, within Echvi_0320at 333.849 kb on - strand, within Echvi_0320at 333.872 kb on + strand, within Echvi_0320at 333.873 kb on - strand, within Echvi_0320at 333.919 kb on + strand, within Echvi_0320at 333.920 kb on - strand, within Echvi_0320at 333.920 kb on - strand, within Echvi_0320at 334.072 kb on + strand, within Echvi_0320at 334.072 kb on + strand, within Echvi_0320at 334.111 kb on - strand, within Echvi_0320at 334.207 kb on + strand, within Echvi_0320at 334.295 kb on - strand, within Echvi_0320at 334.295 kb on - strand, within Echvi_0320at 334.295 kb on - strand, within Echvi_0320at 334.295 kb on - strand, within Echvi_0320at 334.302 kb on - strand, within Echvi_0320at 334.302 kb on - strand, within Echvi_0320at 334.302 kb on - strand, within Echvi_0320at 334.303 kb on + strand, within Echvi_0320at 334.303 kb on + strand, within Echvi_0320at 334.307 kb on + strand, within Echvi_0320at 334.327 kb on + strand, within Echvi_0320at 334.328 kb on - strand, within Echvi_0320at 334.328 kb on - strand, within Echvi_0320at 334.493 kb on + strandat 334.549 kb on - strandat 334.565 kb on + strandat 334.586 kb on - strandat 334.701 kb on + strandat 334.780 kb on - strandat 334.934 kb on + strand, within Echvi_0321at 335.103 kb on - strand, within Echvi_0321at 335.117 kb on + strand, within Echvi_0321at 335.149 kb on + strand, within Echvi_0321at 335.149 kb on + strand, within Echvi_0321at 335.308 kb on + strand, within Echvi_0321at 335.321 kb on + strand, within Echvi_0321at 335.355 kb on + strand, within Echvi_0321at 335.583 kb on + strand, within Echvi_0321at 335.583 kb on + strand, within Echvi_0321at 335.583 kb on + strand, within Echvi_0321at 335.583 kb on + strand, within Echvi_0321at 335.583 kb on + strand, within Echvi_0321at 335.585 kb on + strand, within Echvi_0321at 335.586 kb on - strand, within Echvi_0321at 335.586 kb on - strand, within Echvi_0321at 335.623 kb on + strand, within Echvi_0321at 335.623 kb on + strand, within Echvi_0321at 335.623 kb on + strand, within Echvi_0321at 335.623 kb on + strand, within Echvi_0321at 335.623 kb on + strand, within Echvi_0321at 335.631 kb on + strand, within Echvi_0321at 335.689 kb on + strand, within Echvi_0321at 335.692 kb on + strand, within Echvi_0321at 335.692 kb on + strand, within Echvi_0321at 335.722 kb on + strand, within Echvi_0321at 335.812 kb on + strand, within Echvi_0321at 335.835 kb on + strand, within Echvi_0321at 335.853 kb on + strand, within Echvi_0321at 335.853 kb on + strand, within Echvi_0321at 335.853 kb on + strand, within Echvi_0321at 335.895 kb on - strand, within Echvi_0321at 335.895 kb on - strand, within Echvi_0321at 335.895 kb on - strand, within Echvi_0321at 335.900 kb on + strand, within Echvi_0321at 335.900 kb on + strand, within Echvi_0321at 335.900 kb on + strand, within Echvi_0321at 335.900 kb on + strand, within Echvi_0321at 335.900 kb on + strand, within Echvi_0321at 335.900 kb on + strand, within Echvi_0321at 335.900 kb on + strand, within Echvi_0321at 335.901 kb on - strand, within Echvi_0321at 335.901 kb on - strand, within Echvi_0321at 335.901 kb on - strand, within Echvi_0321at 335.901 kb on - strand, within Echvi_0321at 335.923 kb on + strand, within Echvi_0321at 335.923 kb on + strand, within Echvi_0321at 335.923 kb on + strand, within Echvi_0321at 335.924 kb on - strand, within Echvi_0321at 336.233 kb on - strandat 336.301 kb on + strandat 336.301 kb on + strandat 336.302 kb on - strandat 336.302 kb on - strandat 336.307 kb on + strandat 336.580 kb on - strand, within Echvi_0322at 336.912 kb on - strand, within Echvi_0322at 337.154 kb on + strand, within Echvi_0322at 337.327 kb on + strandat 337.346 kb on + strandat 337.346 kb on + strandat 337.349 kb on + strandat 337.350 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 30 mM
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333,736 + Echvi_0320 0.19 +0.3
333,736 + Echvi_0320 0.19 +1.2
333,736 + Echvi_0320 0.19 +0.5
333,736 + Echvi_0320 0.19 +0.6
333,736 + Echvi_0320 0.19 -0.6
333,736 + +2.6
333,737 - Echvi_0320 0.19 +1.1
333,737 - Echvi_0320 0.19 -1.8
333,737 - Echvi_0320 0.19 +0.8
333,761 + Echvi_0320 0.22 +0.9
333,761 + Echvi_0320 0.22 -1.4
333,761 + Echvi_0320 0.22 -0.3
333,761 + Echvi_0320 0.22 -1.4
333,772 + Echvi_0320 0.23 -2.4
333,805 + Echvi_0320 0.26 +0.4
333,849 - Echvi_0320 0.31 +0.6
333,872 + Echvi_0320 0.34 -0.1
333,873 - Echvi_0320 0.34 +0.1
333,919 + Echvi_0320 0.39 +0.7
333,920 - Echvi_0320 0.39 -0.8
333,920 - Echvi_0320 0.39 -2.1
334,072 + Echvi_0320 0.55 +0.3
334,072 + Echvi_0320 0.55 +0.3
334,111 - Echvi_0320 0.60 +0.3
334,207 + Echvi_0320 0.70 -0.1
334,295 - Echvi_0320 0.79 -1.4
334,295 - Echvi_0320 0.79 -0.7
334,295 - Echvi_0320 0.79 +0.1
334,295 - Echvi_0320 0.79 -0.1
334,302 - Echvi_0320 0.80 -0.8
334,302 - Echvi_0320 0.80 -0.6
334,302 - Echvi_0320 0.80 -0.9
334,303 + Echvi_0320 0.80 -1.6
334,303 + Echvi_0320 0.80 +1.0
334,307 + Echvi_0320 0.81 -0.2
334,327 + Echvi_0320 0.83 -0.2
334,328 - Echvi_0320 0.83 +0.4
334,328 - Echvi_0320 0.83 +0.0
334,493 + -0.8
334,549 - -1.5
334,565 + -1.0
334,586 - -1.7
334,701 + +0.3
334,780 - +2.7
334,934 + Echvi_0321 0.16 -0.4
335,103 - Echvi_0321 0.26 +2.9
335,117 + Echvi_0321 0.27 +0.8
335,149 + Echvi_0321 0.29 +0.6
335,149 + Echvi_0321 0.29 +1.2
335,308 + Echvi_0321 0.38 +0.9
335,321 + Echvi_0321 0.39 +0.3
335,355 + Echvi_0321 0.41 -1.7
335,583 + Echvi_0321 0.55 +1.3
335,583 + Echvi_0321 0.55 -0.2
335,583 + Echvi_0321 0.55 +0.0
335,583 + Echvi_0321 0.55 -0.1
335,583 + Echvi_0321 0.55 +0.9
335,585 + Echvi_0321 0.55 +0.5
335,586 - Echvi_0321 0.55 +1.9
335,586 - Echvi_0321 0.55 +1.6
335,623 + Echvi_0321 0.57 +0.6
335,623 + Echvi_0321 0.57 +0.7
335,623 + Echvi_0321 0.57 -1.4
335,623 + Echvi_0321 0.57 +0.9
335,623 + Echvi_0321 0.57 +1.1
335,631 + Echvi_0321 0.57 +1.0
335,689 + Echvi_0321 0.61 -0.9
335,692 + Echvi_0321 0.61 -1.7
335,692 + Echvi_0321 0.61 +0.4
335,722 + Echvi_0321 0.63 -0.6
335,812 + Echvi_0321 0.68 -0.3
335,835 + Echvi_0321 0.69 +0.6
335,853 + Echvi_0321 0.70 -0.8
335,853 + Echvi_0321 0.70 -0.8
335,853 + Echvi_0321 0.70 +1.1
335,895 - Echvi_0321 0.73 +2.2
335,895 - Echvi_0321 0.73 +2.2
335,895 - Echvi_0321 0.73 +1.2
335,900 + Echvi_0321 0.73 +1.1
335,900 + Echvi_0321 0.73 -0.1
335,900 + Echvi_0321 0.73 -0.6
335,900 + Echvi_0321 0.73 -0.7
335,900 + Echvi_0321 0.73 -0.0
335,900 + Echvi_0321 0.73 +1.6
335,900 + Echvi_0321 0.73 -0.9
335,901 - Echvi_0321 0.73 +2.6
335,901 - Echvi_0321 0.73 +0.3
335,901 - Echvi_0321 0.73 +1.6
335,901 - Echvi_0321 0.73 +1.3
335,923 + Echvi_0321 0.75 +0.2
335,923 + Echvi_0321 0.75 -0.4
335,923 + Echvi_0321 0.75 -0.8
335,924 - Echvi_0321 0.75 +0.9
336,233 - +1.6
336,301 + -1.2
336,301 + -1.9
336,302 - +1.3
336,302 - +1.9
336,307 + +0.5
336,580 - Echvi_0322 0.24 +2.3
336,912 - Echvi_0322 0.55 +1.7
337,154 + Echvi_0322 0.77 +1.7
337,327 + +2.2
337,346 + +0.2
337,346 + +0.4
337,349 + -0.2
337,350 - -0.6

Or see this region's nucleotide sequence