Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4347

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_4345 and EX28DRAFT_4346 are separated by 265 nucleotidesEX28DRAFT_4346 and EX28DRAFT_4347 are separated by 57 nucleotidesEX28DRAFT_4347 and EX28DRAFT_4348 are separated by 188 nucleotides EX28DRAFT_4345: EX28DRAFT_4345 - ribosome biogenesis GTP-binding protein YsxC/EngB, at 8,001 to 8,630 _4345 EX28DRAFT_4346: EX28DRAFT_4346 - RNA, at 8,896 to 9,150 _4346 EX28DRAFT_4347: EX28DRAFT_4347 - Uncharacterized protein conserved in bacteria, at 9,208 to 9,723 _4347 EX28DRAFT_4348: EX28DRAFT_4348 - oxygen-independent coproporphyrinogen III oxidase, at 9,912 to 11,285 _4348 Position (kb) 9 10Strain fitness (log2 ratio) -1 0 1at 8.666 kb on - strandat 8.702 kb on - strandat 8.702 kb on - strandat 8.868 kb on - strandat 8.886 kb on - strandat 8.928 kb on - strand, within EX28DRAFT_4346at 9.000 kb on + strand, within EX28DRAFT_4346at 9.000 kb on + strand, within EX28DRAFT_4346at 9.034 kb on - strand, within EX28DRAFT_4346at 9.174 kb on + strandat 9.175 kb on - strandat 9.177 kb on - strandat 9.194 kb on - strandat 9.194 kb on - strandat 9.194 kb on - strandat 9.194 kb on - strandat 9.650 kb on - strand, within EX28DRAFT_4347at 9.693 kb on + strandat 9.693 kb on + strandat 9.693 kb on + strandat 9.694 kb on - strandat 9.756 kb on + strandat 9.756 kb on + strandat 9.757 kb on - strandat 9.758 kb on + strandat 9.759 kb on - strandat 9.759 kb on - strandat 9.771 kb on + strandat 9.773 kb on + strandat 9.773 kb on + strandat 9.773 kb on + strandat 9.773 kb on + strandat 9.773 kb on + strandat 9.773 kb on + strandat 9.774 kb on - strandat 9.779 kb on - strandat 9.803 kb on + strandat 9.882 kb on - strandat 9.882 kb on - strandat 9.947 kb on - strandat 9.963 kb on + strandat 10.078 kb on - strand, within EX28DRAFT_4348at 10.387 kb on + strand, within EX28DRAFT_4348at 10.387 kb on + strand, within EX28DRAFT_4348

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
remove
8,666 - -0.2
8,702 - -0.8
8,702 - +1.2
8,868 - -0.9
8,886 - +0.6
8,928 - EX28DRAFT_4346 0.13 +0.0
9,000 + EX28DRAFT_4346 0.41 -0.1
9,000 + EX28DRAFT_4346 0.41 -0.2
9,034 - EX28DRAFT_4346 0.54 +0.5
9,174 + +1.0
9,175 - -0.2
9,177 - +0.0
9,194 - +0.1
9,194 - +0.3
9,194 - +0.8
9,194 - +0.3
9,650 - EX28DRAFT_4347 0.86 -1.4
9,693 + -0.5
9,693 + -0.6
9,693 + +0.1
9,694 - +0.4
9,756 + +0.5
9,756 + +0.3
9,757 - +0.7
9,758 + -1.1
9,759 - -0.3
9,759 - +0.6
9,771 + -0.8
9,773 + +0.2
9,773 + +0.1
9,773 + -0.6
9,773 + +0.1
9,773 + +0.5
9,773 + +0.1
9,774 - -0.0
9,779 - +0.6
9,803 + +1.4
9,882 - +0.2
9,882 - +0.9
9,947 - +0.1
9,963 + +0.2
10,078 - EX28DRAFT_4348 0.12 +0.6
10,387 + EX28DRAFT_4348 0.35 -0.1
10,387 + EX28DRAFT_4348 0.35 -0.9

Or see this region's nucleotide sequence