Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4092

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4090 and EX28DRAFT_4091 overlap by 4 nucleotidesEX28DRAFT_4091 and EX28DRAFT_4092 overlap by 4 nucleotidesEX28DRAFT_4092 and EX28DRAFT_4093 overlap by 4 nucleotides EX28DRAFT_4090: EX28DRAFT_4090 - 3-oxoacyl-(acyl-carrier-protein) synthase, at 64,375 to 65,604 _4090 EX28DRAFT_4091: EX28DRAFT_4091 - 3-oxoacyl-(acyl-carrier-protein) reductase, putative, at 65,601 to 66,332 _4091 EX28DRAFT_4092: EX28DRAFT_4092 - Predicted 3-hydroxylacyl-(acyl carrier protein) dehydratase, at 66,329 to 66,802 _4092 EX28DRAFT_4093: EX28DRAFT_4093 - 3-oxoacyl-(acyl-carrier-protein) synthase, at 66,799 to 67,968 _4093 Position (kb) 66 67Strain fitness (log2 ratio) -2 -1 0 1at 65.403 kb on + strand, within EX28DRAFT_4090at 65.404 kb on - strand, within EX28DRAFT_4090at 65.404 kb on - strand, within EX28DRAFT_4090at 65.415 kb on + strand, within EX28DRAFT_4090at 65.417 kb on + strand, within EX28DRAFT_4090at 65.417 kb on + strand, within EX28DRAFT_4090at 65.418 kb on - strand, within EX28DRAFT_4090at 65.477 kb on + strand, within EX28DRAFT_4090at 65.477 kb on + strand, within EX28DRAFT_4090at 65.477 kb on + strand, within EX28DRAFT_4090at 65.477 kb on + strand, within EX28DRAFT_4090at 65.477 kb on + strand, within EX28DRAFT_4090at 65.478 kb on - strand, within EX28DRAFT_4090at 65.478 kb on - strand, within EX28DRAFT_4090at 65.478 kb on - strand, within EX28DRAFT_4090at 65.478 kb on - strand, within EX28DRAFT_4090at 65.478 kb on - strand, within EX28DRAFT_4090at 65.478 kb on - strand, within EX28DRAFT_4090at 65.516 kb on + strandat 65.517 kb on - strandat 65.604 kb on + strandat 65.604 kb on + strandat 65.604 kb on + strandat 65.605 kb on - strandat 65.668 kb on + strandat 65.705 kb on + strand, within EX28DRAFT_4091at 65.943 kb on - strand, within EX28DRAFT_4091at 65.963 kb on + strand, within EX28DRAFT_4091at 65.964 kb on - strand, within EX28DRAFT_4091at 65.964 kb on - strand, within EX28DRAFT_4091at 65.984 kb on + strand, within EX28DRAFT_4091at 65.986 kb on + strand, within EX28DRAFT_4091at 66.081 kb on + strand, within EX28DRAFT_4091at 66.089 kb on - strand, within EX28DRAFT_4091at 66.389 kb on - strand, within EX28DRAFT_4092at 66.562 kb on + strand, within EX28DRAFT_4092at 66.778 kb on - strandat 66.778 kb on - strandat 66.791 kb on + strandat 66.791 kb on + strandat 66.791 kb on + strandat 66.792 kb on - strandat 66.792 kb on - strandat 66.795 kb on + strandat 66.795 kb on + strandat 66.795 kb on + strandat 66.796 kb on - strandat 66.796 kb on - strandat 66.796 kb on - strandat 66.796 kb on - strandat 66.856 kb on - strandat 67.006 kb on - strand, within EX28DRAFT_4093at 67.085 kb on - strand, within EX28DRAFT_4093at 67.139 kb on + strand, within EX28DRAFT_4093at 67.231 kb on - strand, within EX28DRAFT_4093at 67.235 kb on + strand, within EX28DRAFT_4093at 67.236 kb on - strand, within EX28DRAFT_4093at 67.270 kb on + strand, within EX28DRAFT_4093at 67.271 kb on - strand, within EX28DRAFT_4093at 67.271 kb on - strand, within EX28DRAFT_4093at 67.292 kb on - strand, within EX28DRAFT_4093at 67.292 kb on - strand, within EX28DRAFT_4093

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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65,403 + EX28DRAFT_4090 0.84 +0.3
65,404 - EX28DRAFT_4090 0.84 +0.3
65,404 - EX28DRAFT_4090 0.84 +0.1
65,415 + EX28DRAFT_4090 0.85 +0.2
65,417 + EX28DRAFT_4090 0.85 -0.3
65,417 + EX28DRAFT_4090 0.85 -0.7
65,418 - EX28DRAFT_4090 0.85 +0.1
65,477 + EX28DRAFT_4090 0.90 -0.3
65,477 + EX28DRAFT_4090 0.90 -0.1
65,477 + EX28DRAFT_4090 0.90 -0.3
65,477 + EX28DRAFT_4090 0.90 +0.9
65,477 + EX28DRAFT_4090 0.90 +0.5
65,478 - EX28DRAFT_4090 0.90 -0.3
65,478 - EX28DRAFT_4090 0.90 -0.8
65,478 - EX28DRAFT_4090 0.90 -0.8
65,478 - EX28DRAFT_4090 0.90 -0.1
65,478 - EX28DRAFT_4090 0.90 +0.2
65,478 - EX28DRAFT_4090 0.90 -0.1
65,516 + +1.4
65,517 - -0.6
65,604 + -0.3
65,604 + -0.4
65,604 + +0.5
65,605 - -1.3
65,668 + +0.4
65,705 + EX28DRAFT_4091 0.14 -2.0
65,943 - EX28DRAFT_4091 0.47 -0.3
65,963 + EX28DRAFT_4091 0.49 +0.2
65,964 - EX28DRAFT_4091 0.50 +0.0
65,964 - EX28DRAFT_4091 0.50 +0.7
65,984 + EX28DRAFT_4091 0.52 +0.7
65,986 + EX28DRAFT_4091 0.53 -0.3
66,081 + EX28DRAFT_4091 0.66 +0.1
66,089 - EX28DRAFT_4091 0.67 +0.1
66,389 - EX28DRAFT_4092 0.13 -1.1
66,562 + EX28DRAFT_4092 0.49 -0.3
66,778 - -1.6
66,778 - +0.8
66,791 + +0.1
66,791 + +0.3
66,791 + +0.9
66,792 - -1.7
66,792 - -0.4
66,795 + +0.0
66,795 + -0.7
66,795 + -1.8
66,796 - +0.1
66,796 - -0.1
66,796 - +0.8
66,796 - +0.7
66,856 - -1.1
67,006 - EX28DRAFT_4093 0.18 +0.2
67,085 - EX28DRAFT_4093 0.24 -0.4
67,139 + EX28DRAFT_4093 0.29 -0.5
67,231 - EX28DRAFT_4093 0.37 -0.1
67,235 + EX28DRAFT_4093 0.37 -1.5
67,236 - EX28DRAFT_4093 0.37 +0.3
67,270 + EX28DRAFT_4093 0.40 -0.5
67,271 - EX28DRAFT_4093 0.40 -0.6
67,271 - EX28DRAFT_4093 0.40 -0.3
67,292 - EX28DRAFT_4093 0.42 +0.4
67,292 - EX28DRAFT_4093 0.42 -0.1

Or see this region's nucleotide sequence