Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4051 and EX28DRAFT_4052 are separated by 229 nucleotides EX28DRAFT_4052 and EX28DRAFT_4053 are separated by 65 nucleotides
EX28DRAFT_4051: EX28DRAFT_4051 - Sugar kinases, ribokinase family, at 22,989 to 23,918
_4051
EX28DRAFT_4052: EX28DRAFT_4052 - FOG: EAL domain, at 24,148 to 24,921
_4052
EX28DRAFT_4053: EX28DRAFT_4053 - Uncharacterized protein involved in outer membrane biogenesis, at 24,987 to 27,029
_4053
Position (kb) 24
25 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 23.368 kb on + strand, within EX28DRAFT_4051 at 23.369 kb on - strand, within EX28DRAFT_4051 at 23.525 kb on - strand, within EX28DRAFT_4051 at 23.530 kb on + strand, within EX28DRAFT_4051 at 23.531 kb on - strand, within EX28DRAFT_4051 at 23.531 kb on - strand, within EX28DRAFT_4051 at 23.617 kb on + strand, within EX28DRAFT_4051 at 23.618 kb on - strand, within EX28DRAFT_4051 at 23.654 kb on - strand, within EX28DRAFT_4051 at 23.657 kb on - strand, within EX28DRAFT_4051 at 23.657 kb on - strand, within EX28DRAFT_4051 at 23.770 kb on + strand, within EX28DRAFT_4051 at 23.771 kb on - strand, within EX28DRAFT_4051 at 23.810 kb on + strand, within EX28DRAFT_4051 at 23.811 kb on - strand, within EX28DRAFT_4051 at 23.811 kb on - strand, within EX28DRAFT_4051 at 23.812 kb on + strand, within EX28DRAFT_4051 at 23.826 kb on + strand at 23.918 kb on + strand at 23.918 kb on + strand at 23.919 kb on - strand at 23.919 kb on - strand at 23.919 kb on - strand at 23.919 kb on - strand at 24.046 kb on + strand at 24.074 kb on + strand at 24.075 kb on - strand at 24.198 kb on + strand at 24.198 kb on + strand at 24.247 kb on + strand, within EX28DRAFT_4052 at 24.248 kb on - strand, within EX28DRAFT_4052 at 24.253 kb on + strand, within EX28DRAFT_4052 at 24.254 kb on - strand, within EX28DRAFT_4052 at 24.265 kb on + strand, within EX28DRAFT_4052 at 24.355 kb on + strand, within EX28DRAFT_4052 at 24.411 kb on + strand, within EX28DRAFT_4052 at 24.411 kb on + strand, within EX28DRAFT_4052 at 24.412 kb on - strand, within EX28DRAFT_4052 at 24.412 kb on - strand, within EX28DRAFT_4052 at 24.682 kb on + strand, within EX28DRAFT_4052 at 24.687 kb on + strand, within EX28DRAFT_4052 at 24.687 kb on + strand, within EX28DRAFT_4052 at 24.687 kb on + strand, within EX28DRAFT_4052 at 24.687 kb on + strand, within EX28DRAFT_4052 at 24.688 kb on - strand, within EX28DRAFT_4052 at 24.712 kb on - strand, within EX28DRAFT_4052 at 24.712 kb on - strand, within EX28DRAFT_4052 at 24.712 kb on - strand, within EX28DRAFT_4052 at 24.758 kb on + strand, within EX28DRAFT_4052 at 24.759 kb on - strand, within EX28DRAFT_4052 at 24.759 kb on - strand, within EX28DRAFT_4052 at 24.862 kb on + strand at 24.862 kb on + strand at 24.863 kb on - strand at 24.865 kb on + strand at 24.866 kb on - strand at 24.906 kb on + strand at 24.907 kb on - strand at 24.908 kb on + strand at 24.949 kb on + strand at 24.949 kb on + strand at 24.955 kb on + strand at 25.061 kb on + strand at 25.061 kb on + strand at 25.062 kb on - strand at 25.154 kb on - strand at 25.482 kb on - strand, within EX28DRAFT_4053 at 25.621 kb on + strand, within EX28DRAFT_4053 at 25.621 kb on + strand, within EX28DRAFT_4053 at 25.621 kb on + strand, within EX28DRAFT_4053 at 25.622 kb on - strand, within EX28DRAFT_4053 at 25.629 kb on + strand, within EX28DRAFT_4053 at 25.629 kb on + strand, within EX28DRAFT_4053 at 25.629 kb on + strand, within EX28DRAFT_4053 at 25.629 kb on + strand, within EX28DRAFT_4053 at 25.630 kb on - strand, within EX28DRAFT_4053 at 25.630 kb on - strand, within EX28DRAFT_4053 at 25.630 kb on - strand, within EX28DRAFT_4053 at 25.860 kb on + strand, within EX28DRAFT_4053
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 23,368 + EX28DRAFT_4051 0.41 -0.1 23,369 - EX28DRAFT_4051 0.41 -0.3 23,525 - EX28DRAFT_4051 0.58 -0.9 23,530 + EX28DRAFT_4051 0.58 +0.4 23,531 - EX28DRAFT_4051 0.58 -1.3 23,531 - EX28DRAFT_4051 0.58 -1.0 23,617 + EX28DRAFT_4051 0.68 -0.0 23,618 - EX28DRAFT_4051 0.68 -0.6 23,654 - EX28DRAFT_4051 0.72 +0.1 23,657 - EX28DRAFT_4051 0.72 -0.1 23,657 - EX28DRAFT_4051 0.72 +1.7 23,770 + EX28DRAFT_4051 0.84 -0.6 23,771 - EX28DRAFT_4051 0.84 -1.6 23,810 + EX28DRAFT_4051 0.88 +1.6 23,811 - EX28DRAFT_4051 0.88 +1.0 23,811 - EX28DRAFT_4051 0.88 -0.5 23,812 + EX28DRAFT_4051 0.88 -1.3 23,826 + -0.5 23,918 + +0.3 23,918 + -0.2 23,919 - -0.5 23,919 - +0.2 23,919 - -0.3 23,919 - +0.3 24,046 + -0.1 24,074 + +0.7 24,075 - +1.4 24,198 + -0.5 24,198 + -0.1 24,247 + EX28DRAFT_4052 0.13 +0.2 24,248 - EX28DRAFT_4052 0.13 -0.3 24,253 + EX28DRAFT_4052 0.14 +0.5 24,254 - EX28DRAFT_4052 0.14 +0.4 24,265 + EX28DRAFT_4052 0.15 +1.6 24,355 + EX28DRAFT_4052 0.27 +1.3 24,411 + EX28DRAFT_4052 0.34 -0.3 24,411 + EX28DRAFT_4052 0.34 -0.2 24,412 - EX28DRAFT_4052 0.34 -0.2 24,412 - EX28DRAFT_4052 0.34 -0.1 24,682 + EX28DRAFT_4052 0.69 +0.3 24,687 + EX28DRAFT_4052 0.70 +0.7 24,687 + EX28DRAFT_4052 0.70 +0.5 24,687 + EX28DRAFT_4052 0.70 +0.2 24,687 + EX28DRAFT_4052 0.70 -0.6 24,688 - EX28DRAFT_4052 0.70 -0.0 24,712 - EX28DRAFT_4052 0.73 +0.5 24,712 - EX28DRAFT_4052 0.73 -1.9 24,712 - EX28DRAFT_4052 0.73 +1.3 24,758 + EX28DRAFT_4052 0.79 +1.3 24,759 - EX28DRAFT_4052 0.79 -2.3 24,759 - EX28DRAFT_4052 0.79 -0.1 24,862 + +0.0 24,862 + -0.0 24,863 - +1.2 24,865 + -0.1 24,866 - -0.3 24,906 + -0.5 24,907 - +0.1 24,908 + +0.3 24,949 + -2.1 24,949 + -0.3 24,955 + +0.3 25,061 + +0.2 25,061 + +0.7 25,062 - +0.0 25,154 - +0.3 25,482 - EX28DRAFT_4053 0.24 +0.1 25,621 + EX28DRAFT_4053 0.31 -0.3 25,621 + EX28DRAFT_4053 0.31 -0.7 25,621 + EX28DRAFT_4053 0.31 +0.1 25,622 - EX28DRAFT_4053 0.31 -0.3 25,629 + EX28DRAFT_4053 0.31 +0.2 25,629 + EX28DRAFT_4053 0.31 -0.2 25,629 + EX28DRAFT_4053 0.31 -3.0 25,629 + EX28DRAFT_4053 0.31 +0.6 25,630 - EX28DRAFT_4053 0.31 +0.5 25,630 - EX28DRAFT_4053 0.31 +0.1 25,630 - EX28DRAFT_4053 0.31 -0.3 25,860 + EX28DRAFT_4053 0.43 -1.9
Or see this region's nucleotide sequence