Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4027

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4025 and EX28DRAFT_4026 are separated by 4 nucleotidesEX28DRAFT_4026 and EX28DRAFT_4027 are separated by 27 nucleotidesEX28DRAFT_4027 and EX28DRAFT_4028 are separated by 106 nucleotides EX28DRAFT_4025: EX28DRAFT_4025 - ABC-type sugar transport system, ATPase component, at 236,479 to 237,984 _4025 EX28DRAFT_4026: EX28DRAFT_4026 - Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components, at 237,989 to 238,954 _4026 EX28DRAFT_4027: EX28DRAFT_4027 - ABC-type sugar transport system, periplasmic component, at 238,982 to 239,872 _4027 EX28DRAFT_4028: EX28DRAFT_4028 - ribokinase, at 239,979 to 240,908 _4028 Position (kb) 238 239 240Strain fitness (log2 ratio) -2 -1 0 1 2at 237.982 kb on + strandat 237.983 kb on - strandat 237.983 kb on - strandat 237.994 kb on + strandat 238.020 kb on - strandat 238.020 kb on - strandat 238.121 kb on - strand, within EX28DRAFT_4026at 238.121 kb on - strand, within EX28DRAFT_4026at 238.528 kb on + strand, within EX28DRAFT_4026at 238.529 kb on - strand, within EX28DRAFT_4026at 238.551 kb on - strand, within EX28DRAFT_4026at 238.551 kb on - strand, within EX28DRAFT_4026at 238.551 kb on - strand, within EX28DRAFT_4026at 238.551 kb on - strand, within EX28DRAFT_4026at 238.580 kb on + strand, within EX28DRAFT_4026at 238.582 kb on + strand, within EX28DRAFT_4026at 238.582 kb on + strand, within EX28DRAFT_4026at 238.582 kb on + strand, within EX28DRAFT_4026at 238.582 kb on + strand, within EX28DRAFT_4026at 238.583 kb on - strand, within EX28DRAFT_4026at 238.583 kb on - strand, within EX28DRAFT_4026at 238.583 kb on - strand, within EX28DRAFT_4026at 238.583 kb on - strand, within EX28DRAFT_4026at 238.583 kb on - strand, within EX28DRAFT_4026at 238.586 kb on + strand, within EX28DRAFT_4026at 238.587 kb on - strand, within EX28DRAFT_4026at 238.587 kb on - strand, within EX28DRAFT_4026at 238.587 kb on - strand, within EX28DRAFT_4026at 238.640 kb on - strand, within EX28DRAFT_4026at 238.640 kb on - strand, within EX28DRAFT_4026at 238.640 kb on - strand, within EX28DRAFT_4026at 238.652 kb on - strand, within EX28DRAFT_4026at 238.658 kb on + strand, within EX28DRAFT_4026at 238.659 kb on - strand, within EX28DRAFT_4026at 238.745 kb on + strand, within EX28DRAFT_4026at 238.873 kb on - strandat 238.886 kb on + strandat 238.935 kb on + strandat 238.965 kb on + strandat 238.977 kb on + strandat 238.977 kb on + strandat 238.977 kb on + strandat 238.977 kb on + strandat 238.977 kb on + strandat 238.977 kb on + strandat 238.977 kb on + strandat 238.978 kb on - strandat 238.978 kb on - strandat 238.978 kb on - strandat 238.978 kb on - strandat 239.037 kb on + strandat 239.038 kb on - strandat 239.150 kb on + strand, within EX28DRAFT_4027at 239.214 kb on + strand, within EX28DRAFT_4027at 239.268 kb on + strand, within EX28DRAFT_4027at 239.269 kb on - strand, within EX28DRAFT_4027at 239.272 kb on + strand, within EX28DRAFT_4027at 239.399 kb on + strand, within EX28DRAFT_4027at 239.399 kb on + strand, within EX28DRAFT_4027at 239.399 kb on + strand, within EX28DRAFT_4027at 239.554 kb on + strand, within EX28DRAFT_4027at 239.557 kb on + strand, within EX28DRAFT_4027at 239.557 kb on + strand, within EX28DRAFT_4027at 239.558 kb on - strand, within EX28DRAFT_4027at 239.558 kb on - strand, within EX28DRAFT_4027at 239.558 kb on - strand, within EX28DRAFT_4027at 239.558 kb on - strand, within EX28DRAFT_4027at 239.671 kb on + strand, within EX28DRAFT_4027at 239.870 kb on + strandat 239.871 kb on - strandat 239.871 kb on - strandat 239.914 kb on + strandat 239.931 kb on + strandat 240.085 kb on - strand, within EX28DRAFT_4028at 240.197 kb on - strand, within EX28DRAFT_4028at 240.221 kb on + strand, within EX28DRAFT_4028at 240.221 kb on + strand, within EX28DRAFT_4028at 240.458 kb on + strand, within EX28DRAFT_4028at 240.474 kb on - strand, within EX28DRAFT_4028at 240.494 kb on - strand, within EX28DRAFT_4028at 240.494 kb on - strand, within EX28DRAFT_4028at 240.620 kb on + strand, within EX28DRAFT_4028at 240.726 kb on - strand, within EX28DRAFT_4028at 240.744 kb on - strand, within EX28DRAFT_4028at 240.800 kb on + strand, within EX28DRAFT_4028

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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237,982 + -0.3
237,983 - +0.8
237,983 - -0.8
237,994 + +0.6
238,020 - +0.4
238,020 - +0.1
238,121 - EX28DRAFT_4026 0.14 +0.7
238,121 - EX28DRAFT_4026 0.14 -0.1
238,528 + EX28DRAFT_4026 0.56 +0.2
238,529 - EX28DRAFT_4026 0.56 -0.4
238,551 - EX28DRAFT_4026 0.58 +0.3
238,551 - EX28DRAFT_4026 0.58 +0.7
238,551 - EX28DRAFT_4026 0.58 +1.6
238,551 - EX28DRAFT_4026 0.58 +0.1
238,580 + EX28DRAFT_4026 0.61 -0.9
238,582 + EX28DRAFT_4026 0.61 -0.8
238,582 + EX28DRAFT_4026 0.61 -0.5
238,582 + EX28DRAFT_4026 0.61 +0.1
238,582 + EX28DRAFT_4026 0.61 -0.1
238,583 - EX28DRAFT_4026 0.61 +0.7
238,583 - EX28DRAFT_4026 0.61 +0.9
238,583 - EX28DRAFT_4026 0.61 -0.5
238,583 - EX28DRAFT_4026 0.61 -0.3
238,583 - EX28DRAFT_4026 0.61 -0.3
238,586 + EX28DRAFT_4026 0.62 +0.6
238,587 - EX28DRAFT_4026 0.62 +0.6
238,587 - EX28DRAFT_4026 0.62 +1.8
238,587 - EX28DRAFT_4026 0.62 +0.1
238,640 - EX28DRAFT_4026 0.67 -1.1
238,640 - EX28DRAFT_4026 0.67 -0.2
238,640 - EX28DRAFT_4026 0.67 -0.4
238,652 - EX28DRAFT_4026 0.69 -0.3
238,658 + EX28DRAFT_4026 0.69 +1.2
238,659 - EX28DRAFT_4026 0.69 -0.9
238,745 + EX28DRAFT_4026 0.78 -1.3
238,873 - -0.5
238,886 + +0.2
238,935 + +0.4
238,965 + +0.1
238,977 + -0.4
238,977 + +0.6
238,977 + -2.2
238,977 + -0.5
238,977 + +0.2
238,977 + +0.8
238,977 + +0.3
238,978 - +0.1
238,978 - -0.0
238,978 - -0.0
238,978 - +0.0
239,037 + -1.0
239,038 - -0.4
239,150 + EX28DRAFT_4027 0.19 -0.2
239,214 + EX28DRAFT_4027 0.26 +0.4
239,268 + EX28DRAFT_4027 0.32 +0.1
239,269 - EX28DRAFT_4027 0.32 +0.5
239,272 + EX28DRAFT_4027 0.33 -0.3
239,399 + EX28DRAFT_4027 0.47 -0.4
239,399 + EX28DRAFT_4027 0.47 -0.4
239,399 + EX28DRAFT_4027 0.47 +0.5
239,554 + EX28DRAFT_4027 0.64 +0.1
239,557 + EX28DRAFT_4027 0.65 -0.4
239,557 + EX28DRAFT_4027 0.65 -0.6
239,558 - EX28DRAFT_4027 0.65 -0.4
239,558 - EX28DRAFT_4027 0.65 -0.2
239,558 - EX28DRAFT_4027 0.65 -0.7
239,558 - EX28DRAFT_4027 0.65 -0.3
239,671 + EX28DRAFT_4027 0.77 -0.1
239,870 + -0.4
239,871 - +0.0
239,871 - -0.4
239,914 + -0.1
239,931 + +0.2
240,085 - EX28DRAFT_4028 0.11 -1.9
240,197 - EX28DRAFT_4028 0.23 +0.4
240,221 + EX28DRAFT_4028 0.26 -1.6
240,221 + EX28DRAFT_4028 0.26 +0.7
240,458 + EX28DRAFT_4028 0.52 -0.8
240,474 - EX28DRAFT_4028 0.53 +0.4
240,494 - EX28DRAFT_4028 0.55 -0.5
240,494 - EX28DRAFT_4028 0.55 -0.2
240,620 + EX28DRAFT_4028 0.69 -0.4
240,726 - EX28DRAFT_4028 0.80 +0.3
240,744 - EX28DRAFT_4028 0.82 -0.9
240,800 + EX28DRAFT_4028 0.88 +0.4

Or see this region's nucleotide sequence