Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3983

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3981 and EX28DRAFT_3982 overlap by 4 nucleotidesEX28DRAFT_3982 and EX28DRAFT_3983 are separated by 226 nucleotidesEX28DRAFT_3983 and EX28DRAFT_3984 are separated by 115 nucleotides EX28DRAFT_3981: EX28DRAFT_3981 - 2-keto-3-deoxy-galactonokinase, at 188,464 to 189,342 _3981 EX28DRAFT_3982: EX28DRAFT_3982 - Transcriptional regulators, at 189,339 to 190,028 _3982 EX28DRAFT_3983: EX28DRAFT_3983 - HAD-superfamily hydrolase, subfamily IIB, at 190,255 to 191,067 _3983 EX28DRAFT_3984: EX28DRAFT_3984 - NADPH:quinone reductase and related Zn-dependent oxidoreductases, at 191,183 to 192,208 _3984 Position (kb) 190 191 192Strain fitness (log2 ratio) -2 -1 0 1 2at 189.383 kb on + strandat 189.383 kb on + strandat 189.383 kb on + strandat 189.383 kb on + strandat 189.384 kb on - strandat 189.443 kb on + strand, within EX28DRAFT_3982at 189.443 kb on + strand, within EX28DRAFT_3982at 189.502 kb on - strand, within EX28DRAFT_3982at 189.533 kb on + strand, within EX28DRAFT_3982at 189.964 kb on + strandat 189.964 kb on + strandat 190.017 kb on - strandat 190.048 kb on + strandat 190.048 kb on + strandat 190.048 kb on + strandat 190.049 kb on - strandat 190.060 kb on + strandat 190.060 kb on + strandat 190.061 kb on - strandat 190.061 kb on - strandat 190.113 kb on + strandat 190.114 kb on - strandat 190.284 kb on - strandat 190.479 kb on + strand, within EX28DRAFT_3983at 190.480 kb on - strand, within EX28DRAFT_3983at 190.512 kb on - strand, within EX28DRAFT_3983at 190.535 kb on + strand, within EX28DRAFT_3983at 190.535 kb on + strand, within EX28DRAFT_3983at 190.536 kb on - strand, within EX28DRAFT_3983at 190.536 kb on - strand, within EX28DRAFT_3983at 190.547 kb on - strand, within EX28DRAFT_3983at 190.695 kb on - strand, within EX28DRAFT_3983at 190.697 kb on + strand, within EX28DRAFT_3983at 190.697 kb on + strand, within EX28DRAFT_3983at 190.697 kb on + strand, within EX28DRAFT_3983at 190.697 kb on + strand, within EX28DRAFT_3983at 190.698 kb on - strand, within EX28DRAFT_3983at 190.720 kb on - strand, within EX28DRAFT_3983at 190.721 kb on + strand, within EX28DRAFT_3983at 190.721 kb on + strand, within EX28DRAFT_3983at 190.722 kb on - strand, within EX28DRAFT_3983at 190.722 kb on - strand, within EX28DRAFT_3983at 190.722 kb on - strand, within EX28DRAFT_3983at 190.728 kb on + strand, within EX28DRAFT_3983at 190.790 kb on + strand, within EX28DRAFT_3983at 190.790 kb on + strand, within EX28DRAFT_3983at 190.790 kb on + strand, within EX28DRAFT_3983at 190.790 kb on + strand, within EX28DRAFT_3983at 190.791 kb on - strand, within EX28DRAFT_3983at 190.791 kb on - strand, within EX28DRAFT_3983at 190.800 kb on - strand, within EX28DRAFT_3983at 190.862 kb on + strand, within EX28DRAFT_3983at 190.862 kb on + strand, within EX28DRAFT_3983at 190.863 kb on - strand, within EX28DRAFT_3983at 190.863 kb on - strand, within EX28DRAFT_3983at 190.910 kb on + strand, within EX28DRAFT_3983at 190.911 kb on - strand, within EX28DRAFT_3983at 191.125 kb on + strandat 191.131 kb on + strandat 191.131 kb on + strandat 191.131 kb on + strandat 191.131 kb on + strandat 191.131 kb on + strandat 191.131 kb on + strandat 191.131 kb on + strandat 191.132 kb on - strandat 191.132 kb on - strandat 191.133 kb on + strandat 191.158 kb on + strandat 191.159 kb on - strandat 191.164 kb on + strandat 191.431 kb on + strand, within EX28DRAFT_3984at 191.431 kb on + strand, within EX28DRAFT_3984at 191.497 kb on + strand, within EX28DRAFT_3984at 191.498 kb on - strand, within EX28DRAFT_3984at 191.498 kb on - strand, within EX28DRAFT_3984at 191.768 kb on + strand, within EX28DRAFT_3984at 191.768 kb on + strand, within EX28DRAFT_3984at 191.911 kb on + strand, within EX28DRAFT_3984

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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189,383 + -2.4
189,383 + +0.4
189,383 + -0.4
189,383 + -0.2
189,384 - +0.4
189,443 + EX28DRAFT_3982 0.15 -0.1
189,443 + EX28DRAFT_3982 0.15 +0.7
189,502 - EX28DRAFT_3982 0.24 +0.8
189,533 + EX28DRAFT_3982 0.28 -0.4
189,964 + +1.1
189,964 + -0.1
190,017 - -1.5
190,048 + +0.1
190,048 + -0.0
190,048 + -0.2
190,049 - -0.4
190,060 + -0.2
190,060 + -0.7
190,061 - -0.3
190,061 - -0.1
190,113 + +0.3
190,114 - -1.0
190,284 - +0.3
190,479 + EX28DRAFT_3983 0.28 -0.1
190,480 - EX28DRAFT_3983 0.28 -0.1
190,512 - EX28DRAFT_3983 0.32 -0.2
190,535 + EX28DRAFT_3983 0.34 -0.4
190,535 + EX28DRAFT_3983 0.34 -2.5
190,536 - EX28DRAFT_3983 0.35 -0.0
190,536 - EX28DRAFT_3983 0.35 -0.4
190,547 - EX28DRAFT_3983 0.36 -1.4
190,695 - EX28DRAFT_3983 0.54 +0.3
190,697 + EX28DRAFT_3983 0.54 -0.6
190,697 + EX28DRAFT_3983 0.54 +0.2
190,697 + EX28DRAFT_3983 0.54 -0.3
190,697 + EX28DRAFT_3983 0.54 +0.3
190,698 - EX28DRAFT_3983 0.54 +0.6
190,720 - EX28DRAFT_3983 0.57 +0.3
190,721 + EX28DRAFT_3983 0.57 -0.1
190,721 + EX28DRAFT_3983 0.57 -0.7
190,722 - EX28DRAFT_3983 0.57 +0.8
190,722 - EX28DRAFT_3983 0.57 -1.8
190,722 - EX28DRAFT_3983 0.57 -0.0
190,728 + EX28DRAFT_3983 0.58 -1.8
190,790 + EX28DRAFT_3983 0.66 +0.2
190,790 + EX28DRAFT_3983 0.66 -0.7
190,790 + EX28DRAFT_3983 0.66 -0.7
190,790 + EX28DRAFT_3983 0.66 -0.2
190,791 - EX28DRAFT_3983 0.66 +0.1
190,791 - EX28DRAFT_3983 0.66 -1.5
190,800 - EX28DRAFT_3983 0.67 +0.3
190,862 + EX28DRAFT_3983 0.75 -0.7
190,862 + EX28DRAFT_3983 0.75 -1.4
190,863 - EX28DRAFT_3983 0.75 -0.3
190,863 - EX28DRAFT_3983 0.75 +0.1
190,910 + EX28DRAFT_3983 0.81 -1.2
190,911 - EX28DRAFT_3983 0.81 -0.1
191,125 + -1.5
191,131 + -0.2
191,131 + +0.5
191,131 + +0.2
191,131 + -0.1
191,131 + +0.3
191,131 + -0.2
191,131 + -0.3
191,132 - +1.8
191,132 - +0.2
191,133 + +0.0
191,158 + +0.9
191,159 - -0.1
191,164 + -1.8
191,431 + EX28DRAFT_3984 0.24 +0.8
191,431 + EX28DRAFT_3984 0.24 -0.9
191,497 + EX28DRAFT_3984 0.31 -0.2
191,498 - EX28DRAFT_3984 0.31 -0.3
191,498 - EX28DRAFT_3984 0.31 +1.4
191,768 + EX28DRAFT_3984 0.57 +0.6
191,768 + EX28DRAFT_3984 0.57 +0.0
191,911 + EX28DRAFT_3984 0.71 +0.4

Or see this region's nucleotide sequence