Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3727

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3725 and EX28DRAFT_3726 are separated by 104 nucleotidesEX28DRAFT_3726 and EX28DRAFT_3727 are separated by 62 nucleotidesEX28DRAFT_3727 and EX28DRAFT_3728 are separated by 3 nucleotidesEX28DRAFT_3728 and EX28DRAFT_3729 are separated by 33 nucleotides EX28DRAFT_3725: EX28DRAFT_3725 - ABC-type polysaccharide/polyol phosphate export systems, permease component, at 401,284 to 402,054 _3725 EX28DRAFT_3726: EX28DRAFT_3726 - Phosphotransferase system, mannose/fructose-specific component IIA, at 402,159 to 402,599 _3726 EX28DRAFT_3727: EX28DRAFT_3727 - Predicted xylanase/chitin deacetylase, at 402,662 to 403,909 _3727 EX28DRAFT_3728: EX28DRAFT_3728 - L-aspartate 1-decarboxylase (EC 4.1.1.11), at 403,913 to 404,293 _3728 EX28DRAFT_3729: EX28DRAFT_3729 - pantoate--beta-alanine ligase, at 404,327 to 405,178 _3729 Position (kb) 402 403 404Strain fitness (log2 ratio) -2 -1 0 1at 401.849 kb on - strand, within EX28DRAFT_3725at 401.908 kb on + strand, within EX28DRAFT_3725at 401.908 kb on + strand, within EX28DRAFT_3725at 401.909 kb on - strand, within EX28DRAFT_3725at 401.992 kb on - strandat 402.005 kb on - strandat 402.102 kb on + strandat 402.147 kb on - strandat 402.158 kb on + strandat 402.158 kb on + strandat 402.159 kb on - strandat 402.159 kb on - strandat 402.159 kb on - strandat 402.159 kb on - strandat 402.212 kb on + strand, within EX28DRAFT_3726at 402.402 kb on - strand, within EX28DRAFT_3726at 402.402 kb on - strand, within EX28DRAFT_3726at 402.435 kb on - strand, within EX28DRAFT_3726at 402.435 kb on - strand, within EX28DRAFT_3726at 402.435 kb on - strand, within EX28DRAFT_3726at 402.460 kb on - strand, within EX28DRAFT_3726at 402.589 kb on - strandat 402.597 kb on + strandat 402.626 kb on - strandat 402.764 kb on - strandat 402.866 kb on + strand, within EX28DRAFT_3727at 402.866 kb on + strand, within EX28DRAFT_3727at 402.997 kb on + strand, within EX28DRAFT_3727at 402.998 kb on - strand, within EX28DRAFT_3727at 403.020 kb on - strand, within EX28DRAFT_3727at 403.203 kb on - strand, within EX28DRAFT_3727at 403.210 kb on + strand, within EX28DRAFT_3727at 403.210 kb on + strand, within EX28DRAFT_3727at 403.211 kb on - strand, within EX28DRAFT_3727at 403.246 kb on + strand, within EX28DRAFT_3727at 403.246 kb on + strand, within EX28DRAFT_3727at 403.246 kb on + strand, within EX28DRAFT_3727at 403.246 kb on + strand, within EX28DRAFT_3727at 403.246 kb on + strand, within EX28DRAFT_3727at 403.246 kb on + strand, within EX28DRAFT_3727at 403.246 kb on + strand, within EX28DRAFT_3727at 403.267 kb on - strand, within EX28DRAFT_3727at 403.267 kb on - strand, within EX28DRAFT_3727at 403.328 kb on + strand, within EX28DRAFT_3727at 403.344 kb on - strand, within EX28DRAFT_3727at 403.388 kb on - strand, within EX28DRAFT_3727at 403.421 kb on + strand, within EX28DRAFT_3727at 403.445 kb on + strand, within EX28DRAFT_3727at 403.469 kb on - strand, within EX28DRAFT_3727at 403.471 kb on + strand, within EX28DRAFT_3727at 403.472 kb on - strand, within EX28DRAFT_3727at 403.472 kb on - strand, within EX28DRAFT_3727at 403.602 kb on + strand, within EX28DRAFT_3727at 403.602 kb on + strand, within EX28DRAFT_3727at 403.610 kb on + strand, within EX28DRAFT_3727at 403.612 kb on + strand, within EX28DRAFT_3727at 403.613 kb on - strand, within EX28DRAFT_3727at 403.626 kb on + strand, within EX28DRAFT_3727at 403.693 kb on + strand, within EX28DRAFT_3727at 403.710 kb on - strand, within EX28DRAFT_3727at 403.741 kb on + strand, within EX28DRAFT_3727at 403.844 kb on + strandat 403.851 kb on + strandat 403.851 kb on + strandat 404.096 kb on - strand, within EX28DRAFT_3728at 404.122 kb on - strand, within EX28DRAFT_3728at 404.159 kb on - strand, within EX28DRAFT_3728at 404.230 kb on - strand, within EX28DRAFT_3728at 404.269 kb on + strandat 404.269 kb on + strandat 404.270 kb on - strandat 404.270 kb on - strandat 404.301 kb on - strandat 404.329 kb on - strandat 404.357 kb on + strandat 404.503 kb on + strand, within EX28DRAFT_3729at 404.504 kb on - strand, within EX28DRAFT_3729at 404.646 kb on - strand, within EX28DRAFT_3729at 404.856 kb on + strand, within EX28DRAFT_3729at 404.856 kb on + strand, within EX28DRAFT_3729at 404.857 kb on - strand, within EX28DRAFT_3729

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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401,849 - EX28DRAFT_3725 0.73 -0.4
401,908 + EX28DRAFT_3725 0.81 +0.5
401,908 + EX28DRAFT_3725 0.81 -1.3
401,909 - EX28DRAFT_3725 0.81 -0.8
401,992 - -1.2
402,005 - -0.3
402,102 + -0.1
402,147 - -0.1
402,158 + +0.0
402,158 + +0.3
402,159 - +0.3
402,159 - +1.4
402,159 - +0.1
402,159 - -1.2
402,212 + EX28DRAFT_3726 0.12 +0.3
402,402 - EX28DRAFT_3726 0.55 +0.7
402,402 - EX28DRAFT_3726 0.55 -0.1
402,435 - EX28DRAFT_3726 0.63 +1.1
402,435 - EX28DRAFT_3726 0.63 -0.9
402,435 - EX28DRAFT_3726 0.63 +0.8
402,460 - EX28DRAFT_3726 0.68 -1.5
402,589 - -0.0
402,597 + +0.4
402,626 - +0.2
402,764 - -0.2
402,866 + EX28DRAFT_3727 0.16 +0.1
402,866 + EX28DRAFT_3727 0.16 -0.6
402,997 + EX28DRAFT_3727 0.27 +0.3
402,998 - EX28DRAFT_3727 0.27 +0.2
403,020 - EX28DRAFT_3727 0.29 -0.0
403,203 - EX28DRAFT_3727 0.43 -0.0
403,210 + EX28DRAFT_3727 0.44 +0.9
403,210 + EX28DRAFT_3727 0.44 -0.6
403,211 - EX28DRAFT_3727 0.44 -0.1
403,246 + EX28DRAFT_3727 0.47 -0.1
403,246 + EX28DRAFT_3727 0.47 +0.4
403,246 + EX28DRAFT_3727 0.47 -0.3
403,246 + EX28DRAFT_3727 0.47 -0.1
403,246 + EX28DRAFT_3727 0.47 +1.4
403,246 + EX28DRAFT_3727 0.47 -0.7
403,246 + EX28DRAFT_3727 0.47 +0.1
403,267 - EX28DRAFT_3727 0.48 +0.1
403,267 - EX28DRAFT_3727 0.48 +0.3
403,328 + EX28DRAFT_3727 0.53 +0.7
403,344 - EX28DRAFT_3727 0.55 +0.0
403,388 - EX28DRAFT_3727 0.58 +0.3
403,421 + EX28DRAFT_3727 0.61 +0.1
403,445 + EX28DRAFT_3727 0.63 -0.8
403,469 - EX28DRAFT_3727 0.65 -2.3
403,471 + EX28DRAFT_3727 0.65 +0.0
403,472 - EX28DRAFT_3727 0.65 +0.2
403,472 - EX28DRAFT_3727 0.65 -0.3
403,602 + EX28DRAFT_3727 0.75 +0.2
403,602 + EX28DRAFT_3727 0.75 +0.7
403,610 + EX28DRAFT_3727 0.76 +0.3
403,612 + EX28DRAFT_3727 0.76 -0.8
403,613 - EX28DRAFT_3727 0.76 -0.9
403,626 + EX28DRAFT_3727 0.77 +0.1
403,693 + EX28DRAFT_3727 0.83 -1.1
403,710 - EX28DRAFT_3727 0.84 +0.7
403,741 + EX28DRAFT_3727 0.86 +1.1
403,844 + +0.7
403,851 + -0.3
403,851 + +0.6
404,096 - EX28DRAFT_3728 0.48 -0.2
404,122 - EX28DRAFT_3728 0.55 -0.3
404,159 - EX28DRAFT_3728 0.65 +0.2
404,230 - EX28DRAFT_3728 0.83 +0.6
404,269 + +0.1
404,269 + +0.5
404,270 - -0.1
404,270 - -0.5
404,301 - +0.2
404,329 - -0.2
404,357 + -0.3
404,503 + EX28DRAFT_3729 0.21 +1.1
404,504 - EX28DRAFT_3729 0.21 -1.7
404,646 - EX28DRAFT_3729 0.37 -0.3
404,856 + EX28DRAFT_3729 0.62 -0.5
404,856 + EX28DRAFT_3729 0.62 -1.2
404,857 - EX28DRAFT_3729 0.62 -0.2

Or see this region's nucleotide sequence