Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3484

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3483 and EX28DRAFT_3484 are separated by 121 nucleotidesEX28DRAFT_3484 and EX28DRAFT_3485 overlap by 1 nucleotides EX28DRAFT_3483: EX28DRAFT_3483 - Phage major capsid protein E, at 146,919 to 147,950 _3483 EX28DRAFT_3484: EX28DRAFT_3484 - hypothetical protein, at 148,072 to 148,263 _3484 EX28DRAFT_3485: EX28DRAFT_3485 - hypothetical protein, at 148,263 to 150,107 _3485 Position (kb) 148 149Strain fitness (log2 ratio) -3 -2 -1 0 1at 147.078 kb on + strand, within EX28DRAFT_3483at 147.078 kb on + strand, within EX28DRAFT_3483at 147.079 kb on - strand, within EX28DRAFT_3483at 147.079 kb on - strand, within EX28DRAFT_3483at 147.144 kb on + strand, within EX28DRAFT_3483at 147.145 kb on - strand, within EX28DRAFT_3483at 147.162 kb on + strand, within EX28DRAFT_3483at 147.169 kb on + strand, within EX28DRAFT_3483at 147.212 kb on + strand, within EX28DRAFT_3483at 147.229 kb on + strand, within EX28DRAFT_3483at 147.242 kb on + strand, within EX28DRAFT_3483at 147.250 kb on + strand, within EX28DRAFT_3483at 147.250 kb on + strand, within EX28DRAFT_3483at 147.250 kb on + strand, within EX28DRAFT_3483at 147.250 kb on + strand, within EX28DRAFT_3483at 147.251 kb on - strand, within EX28DRAFT_3483at 147.251 kb on - strand, within EX28DRAFT_3483at 147.251 kb on - strand, within EX28DRAFT_3483at 147.251 kb on - strand, within EX28DRAFT_3483at 147.251 kb on - strand, within EX28DRAFT_3483at 147.252 kb on + strand, within EX28DRAFT_3483at 147.252 kb on + strand, within EX28DRAFT_3483at 147.253 kb on - strand, within EX28DRAFT_3483at 147.253 kb on - strand, within EX28DRAFT_3483at 147.253 kb on - strand, within EX28DRAFT_3483at 147.294 kb on - strand, within EX28DRAFT_3483at 147.322 kb on + strand, within EX28DRAFT_3483at 147.391 kb on + strand, within EX28DRAFT_3483at 147.392 kb on - strand, within EX28DRAFT_3483at 147.414 kb on - strand, within EX28DRAFT_3483at 147.414 kb on - strand, within EX28DRAFT_3483at 147.426 kb on - strand, within EX28DRAFT_3483at 147.442 kb on + strand, within EX28DRAFT_3483at 147.442 kb on + strand, within EX28DRAFT_3483at 147.443 kb on - strand, within EX28DRAFT_3483at 147.443 kb on - strand, within EX28DRAFT_3483at 147.616 kb on + strand, within EX28DRAFT_3483at 147.616 kb on + strand, within EX28DRAFT_3483at 147.617 kb on - strand, within EX28DRAFT_3483at 147.618 kb on + strand, within EX28DRAFT_3483at 147.644 kb on + strand, within EX28DRAFT_3483at 147.644 kb on + strand, within EX28DRAFT_3483at 147.706 kb on + strand, within EX28DRAFT_3483at 147.740 kb on + strand, within EX28DRAFT_3483at 147.783 kb on + strand, within EX28DRAFT_3483at 147.783 kb on + strand, within EX28DRAFT_3483at 147.783 kb on + strand, within EX28DRAFT_3483at 147.784 kb on - strand, within EX28DRAFT_3483at 147.784 kb on - strand, within EX28DRAFT_3483at 147.784 kb on - strand, within EX28DRAFT_3483at 147.837 kb on + strand, within EX28DRAFT_3483at 147.837 kb on + strand, within EX28DRAFT_3483at 147.837 kb on + strand, within EX28DRAFT_3483at 147.838 kb on - strand, within EX28DRAFT_3483at 147.839 kb on + strand, within EX28DRAFT_3483at 147.932 kb on - strandat 147.935 kb on + strandat 147.935 kb on + strandat 147.936 kb on - strandat 147.936 kb on - strandat 148.071 kb on - strandat 148.137 kb on - strand, within EX28DRAFT_3484at 148.197 kb on - strand, within EX28DRAFT_3484at 148.217 kb on + strand, within EX28DRAFT_3484at 148.218 kb on - strand, within EX28DRAFT_3484at 148.245 kb on + strandat 148.245 kb on + strandat 148.418 kb on + strandat 148.419 kb on - strandat 148.424 kb on + strandat 148.647 kb on - strand, within EX28DRAFT_3485at 148.657 kb on - strand, within EX28DRAFT_3485at 148.657 kb on - strand, within EX28DRAFT_3485at 148.707 kb on - strand, within EX28DRAFT_3485at 148.736 kb on + strand, within EX28DRAFT_3485at 148.756 kb on + strand, within EX28DRAFT_3485at 148.805 kb on + strand, within EX28DRAFT_3485at 148.806 kb on - strand, within EX28DRAFT_3485at 148.806 kb on - strand, within EX28DRAFT_3485at 148.806 kb on - strand, within EX28DRAFT_3485at 148.813 kb on - strand, within EX28DRAFT_3485at 148.844 kb on + strand, within EX28DRAFT_3485at 148.876 kb on + strand, within EX28DRAFT_3485at 148.876 kb on + strand, within EX28DRAFT_3485at 148.877 kb on - strand, within EX28DRAFT_3485at 148.891 kb on + strand, within EX28DRAFT_3485at 148.891 kb on + strand, within EX28DRAFT_3485at 148.894 kb on + strand, within EX28DRAFT_3485at 148.928 kb on + strand, within EX28DRAFT_3485at 148.980 kb on - strand, within EX28DRAFT_3485at 149.093 kb on - strand, within EX28DRAFT_3485at 149.096 kb on + strand, within EX28DRAFT_3485at 149.099 kb on + strand, within EX28DRAFT_3485at 149.101 kb on - strand, within EX28DRAFT_3485at 149.119 kb on + strand, within EX28DRAFT_3485at 149.168 kb on + strand, within EX28DRAFT_3485at 149.169 kb on - strand, within EX28DRAFT_3485at 149.171 kb on + strand, within EX28DRAFT_3485at 149.192 kb on + strand, within EX28DRAFT_3485at 149.235 kb on - strand, within EX28DRAFT_3485

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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147,078 + EX28DRAFT_3483 0.15 -0.5
147,078 + EX28DRAFT_3483 0.15 +0.1
147,079 - EX28DRAFT_3483 0.16 +0.7
147,079 - EX28DRAFT_3483 0.16 -0.2
147,144 + EX28DRAFT_3483 0.22 +0.1
147,145 - EX28DRAFT_3483 0.22 -0.2
147,162 + EX28DRAFT_3483 0.24 -0.4
147,169 + EX28DRAFT_3483 0.24 -0.7
147,212 + EX28DRAFT_3483 0.28 -1.2
147,229 + EX28DRAFT_3483 0.30 +0.5
147,242 + EX28DRAFT_3483 0.31 +0.5
147,250 + EX28DRAFT_3483 0.32 -2.1
147,250 + EX28DRAFT_3483 0.32 +0.9
147,250 + EX28DRAFT_3483 0.32 -0.8
147,250 + EX28DRAFT_3483 0.32 -0.2
147,251 - EX28DRAFT_3483 0.32 -0.3
147,251 - EX28DRAFT_3483 0.32 -0.0
147,251 - EX28DRAFT_3483 0.32 -0.2
147,251 - EX28DRAFT_3483 0.32 -0.8
147,251 - EX28DRAFT_3483 0.32 +0.2
147,252 + EX28DRAFT_3483 0.32 +1.3
147,252 + EX28DRAFT_3483 0.32 -0.3
147,253 - EX28DRAFT_3483 0.32 +0.1
147,253 - EX28DRAFT_3483 0.32 +0.5
147,253 - EX28DRAFT_3483 0.32 -0.3
147,294 - EX28DRAFT_3483 0.36 +1.2
147,322 + EX28DRAFT_3483 0.39 +0.4
147,391 + EX28DRAFT_3483 0.46 +0.8
147,392 - EX28DRAFT_3483 0.46 -0.1
147,414 - EX28DRAFT_3483 0.48 +0.4
147,414 - EX28DRAFT_3483 0.48 +0.2
147,426 - EX28DRAFT_3483 0.49 -0.1
147,442 + EX28DRAFT_3483 0.51 +0.8
147,442 + EX28DRAFT_3483 0.51 +0.6
147,443 - EX28DRAFT_3483 0.51 +0.6
147,443 - EX28DRAFT_3483 0.51 +0.1
147,616 + EX28DRAFT_3483 0.68 -0.6
147,616 + EX28DRAFT_3483 0.68 +0.3
147,617 - EX28DRAFT_3483 0.68 -0.5
147,618 + EX28DRAFT_3483 0.68 -0.4
147,644 + EX28DRAFT_3483 0.70 +0.2
147,644 + EX28DRAFT_3483 0.70 +0.5
147,706 + EX28DRAFT_3483 0.76 +1.0
147,740 + EX28DRAFT_3483 0.80 +0.2
147,783 + EX28DRAFT_3483 0.84 -0.4
147,783 + EX28DRAFT_3483 0.84 +0.2
147,783 + EX28DRAFT_3483 0.84 +0.6
147,784 - EX28DRAFT_3483 0.84 +0.3
147,784 - EX28DRAFT_3483 0.84 -0.9
147,784 - EX28DRAFT_3483 0.84 -0.4
147,837 + EX28DRAFT_3483 0.89 +0.6
147,837 + EX28DRAFT_3483 0.89 +1.0
147,837 + EX28DRAFT_3483 0.89 -0.0
147,838 - EX28DRAFT_3483 0.89 +0.8
147,839 + EX28DRAFT_3483 0.89 -1.7
147,932 - -0.2
147,935 + -0.7
147,935 + -0.2
147,936 - -2.6
147,936 - +0.2
148,071 - -0.2
148,137 - EX28DRAFT_3484 0.34 -0.7
148,197 - EX28DRAFT_3484 0.65 -0.3
148,217 + EX28DRAFT_3484 0.76 -0.7
148,218 - EX28DRAFT_3484 0.76 -1.2
148,245 + -0.5
148,245 + -0.0
148,418 + -0.2
148,419 - -0.9
148,424 + +0.1
148,647 - EX28DRAFT_3485 0.21 +0.4
148,657 - EX28DRAFT_3485 0.21 -0.0
148,657 - EX28DRAFT_3485 0.21 +0.0
148,707 - EX28DRAFT_3485 0.24 -2.2
148,736 + EX28DRAFT_3485 0.26 -3.0
148,756 + EX28DRAFT_3485 0.27 +0.6
148,805 + EX28DRAFT_3485 0.29 +0.0
148,806 - EX28DRAFT_3485 0.29 +0.2
148,806 - EX28DRAFT_3485 0.29 -0.8
148,806 - EX28DRAFT_3485 0.29 +0.5
148,813 - EX28DRAFT_3485 0.30 +1.2
148,844 + EX28DRAFT_3485 0.31 +0.4
148,876 + EX28DRAFT_3485 0.33 +0.9
148,876 + EX28DRAFT_3485 0.33 +0.7
148,877 - EX28DRAFT_3485 0.33 -0.9
148,891 + EX28DRAFT_3485 0.34 +0.0
148,891 + EX28DRAFT_3485 0.34 +1.2
148,894 + EX28DRAFT_3485 0.34 -0.1
148,928 + EX28DRAFT_3485 0.36 -0.6
148,980 - EX28DRAFT_3485 0.39 +0.3
149,093 - EX28DRAFT_3485 0.45 +1.1
149,096 + EX28DRAFT_3485 0.45 +0.2
149,099 + EX28DRAFT_3485 0.45 +0.0
149,101 - EX28DRAFT_3485 0.45 -0.2
149,119 + EX28DRAFT_3485 0.46 -3.6
149,168 + EX28DRAFT_3485 0.49 -1.5
149,169 - EX28DRAFT_3485 0.49 +0.5
149,171 + EX28DRAFT_3485 0.49 +1.0
149,192 + EX28DRAFT_3485 0.50 -0.1
149,235 - EX28DRAFT_3485 0.53 -0.5

Or see this region's nucleotide sequence