Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3417

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3416 and EX28DRAFT_3417 are separated by 93 nucleotidesEX28DRAFT_3417 and EX28DRAFT_3418 overlap by 29 nucleotidesEX28DRAFT_3418 and EX28DRAFT_3419 are separated by 150 nucleotides EX28DRAFT_3416: EX28DRAFT_3416 - Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components, at 87,209 to 88,210 _3416 EX28DRAFT_3417: EX28DRAFT_3417 - methyl-accepting chemotaxis sensory transducer with TarH sensor, at 88,304 to 89,875 _3417 EX28DRAFT_3418: EX28DRAFT_3418 - Bacterial regulatory helix-turn-helix protein, lysR family, at 89,847 to 90,203 _3418 EX28DRAFT_3419: EX28DRAFT_3419 - Fructose-1,6-bisphosphatase, at 90,354 to 91,352 _3419 Position (kb) 88 89 90Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 87.343 kb on - strand, within EX28DRAFT_3416at 87.343 kb on - strand, within EX28DRAFT_3416at 87.578 kb on - strand, within EX28DRAFT_3416at 87.602 kb on + strand, within EX28DRAFT_3416at 87.603 kb on - strand, within EX28DRAFT_3416at 87.603 kb on - strand, within EX28DRAFT_3416at 87.603 kb on - strand, within EX28DRAFT_3416at 87.777 kb on - strand, within EX28DRAFT_3416at 87.848 kb on + strand, within EX28DRAFT_3416at 87.848 kb on + strand, within EX28DRAFT_3416at 87.848 kb on + strand, within EX28DRAFT_3416at 87.848 kb on + strand, within EX28DRAFT_3416at 87.848 kb on + strand, within EX28DRAFT_3416at 87.849 kb on - strand, within EX28DRAFT_3416at 87.849 kb on - strand, within EX28DRAFT_3416at 87.849 kb on - strand, within EX28DRAFT_3416at 87.849 kb on - strand, within EX28DRAFT_3416at 87.849 kb on - strand, within EX28DRAFT_3416at 87.849 kb on - strand, within EX28DRAFT_3416at 87.849 kb on - strand, within EX28DRAFT_3416at 87.849 kb on - strand, within EX28DRAFT_3416at 87.849 kb on - strand, within EX28DRAFT_3416at 87.850 kb on + strand, within EX28DRAFT_3416at 87.851 kb on - strand, within EX28DRAFT_3416at 87.901 kb on + strand, within EX28DRAFT_3416at 87.901 kb on + strand, within EX28DRAFT_3416at 87.901 kb on + strand, within EX28DRAFT_3416at 87.942 kb on + strand, within EX28DRAFT_3416at 88.041 kb on + strand, within EX28DRAFT_3416at 88.042 kb on - strand, within EX28DRAFT_3416at 88.049 kb on + strand, within EX28DRAFT_3416at 88.050 kb on - strand, within EX28DRAFT_3416at 88.052 kb on - strand, within EX28DRAFT_3416at 88.281 kb on - strandat 88.281 kb on - strandat 88.297 kb on + strandat 88.300 kb on + strandat 88.300 kb on + strandat 88.309 kb on + strandat 88.310 kb on - strandat 88.310 kb on - strandat 88.310 kb on - strandat 88.394 kb on + strandat 88.394 kb on + strandat 88.394 kb on + strandat 88.395 kb on - strandat 88.395 kb on - strandat 88.429 kb on + strandat 88.475 kb on + strand, within EX28DRAFT_3417at 88.476 kb on - strand, within EX28DRAFT_3417at 88.477 kb on + strand, within EX28DRAFT_3417at 88.478 kb on - strand, within EX28DRAFT_3417at 88.478 kb on - strand, within EX28DRAFT_3417at 88.685 kb on + strand, within EX28DRAFT_3417at 88.686 kb on - strand, within EX28DRAFT_3417at 88.748 kb on + strand, within EX28DRAFT_3417at 88.878 kb on + strand, within EX28DRAFT_3417at 89.021 kb on - strand, within EX28DRAFT_3417at 89.070 kb on + strand, within EX28DRAFT_3417at 89.563 kb on + strand, within EX28DRAFT_3417at 89.726 kb on - strandat 89.876 kb on + strandat 89.877 kb on - strandat 90.165 kb on + strand, within EX28DRAFT_3418at 90.295 kb on + strandat 90.298 kb on - strandat 90.308 kb on - strandat 90.311 kb on + strandat 90.311 kb on + strandat 90.311 kb on + strandat 90.312 kb on - strandat 90.377 kb on + strandat 90.474 kb on - strand, within EX28DRAFT_3419at 90.583 kb on + strand, within EX28DRAFT_3419at 90.584 kb on - strand, within EX28DRAFT_3419at 90.584 kb on - strand, within EX28DRAFT_3419at 90.584 kb on - strand, within EX28DRAFT_3419at 90.584 kb on - strand, within EX28DRAFT_3419at 90.584 kb on - strand, within EX28DRAFT_3419at 90.584 kb on - strand, within EX28DRAFT_3419at 90.638 kb on - strand, within EX28DRAFT_3419at 90.638 kb on - strand, within EX28DRAFT_3419at 90.668 kb on + strand, within EX28DRAFT_3419at 90.690 kb on - strand, within EX28DRAFT_3419at 90.690 kb on - strand, within EX28DRAFT_3419at 90.694 kb on + strand, within EX28DRAFT_3419at 90.695 kb on - strand, within EX28DRAFT_3419at 90.695 kb on - strand, within EX28DRAFT_3419at 90.695 kb on - strand, within EX28DRAFT_3419at 90.725 kb on - strand, within EX28DRAFT_3419at 90.725 kb on - strand, within EX28DRAFT_3419at 90.745 kb on + strand, within EX28DRAFT_3419at 90.746 kb on - strand, within EX28DRAFT_3419at 90.814 kb on + strand, within EX28DRAFT_3419at 90.814 kb on + strand, within EX28DRAFT_3419at 90.814 kb on + strand, within EX28DRAFT_3419at 90.815 kb on - strand, within EX28DRAFT_3419at 90.847 kb on + strand, within EX28DRAFT_3419at 90.848 kb on - strand, within EX28DRAFT_3419at 90.848 kb on - strand, within EX28DRAFT_3419at 90.848 kb on - strand, within EX28DRAFT_3419at 90.871 kb on + strand, within EX28DRAFT_3419at 90.871 kb on + strand, within EX28DRAFT_3419at 90.872 kb on - strand, within EX28DRAFT_3419at 90.872 kb on - strand, within EX28DRAFT_3419

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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87,343 - EX28DRAFT_3416 0.13 -0.3
87,343 - EX28DRAFT_3416 0.13 -0.1
87,578 - EX28DRAFT_3416 0.37 -2.0
87,602 + EX28DRAFT_3416 0.39 -0.5
87,603 - EX28DRAFT_3416 0.39 +0.5
87,603 - EX28DRAFT_3416 0.39 -0.2
87,603 - EX28DRAFT_3416 0.39 +1.4
87,777 - EX28DRAFT_3416 0.57 +0.6
87,848 + EX28DRAFT_3416 0.64 -0.2
87,848 + EX28DRAFT_3416 0.64 +0.5
87,848 + EX28DRAFT_3416 0.64 +0.3
87,848 + EX28DRAFT_3416 0.64 +1.1
87,848 + EX28DRAFT_3416 0.64 +0.2
87,849 - EX28DRAFT_3416 0.64 +0.8
87,849 - EX28DRAFT_3416 0.64 -0.3
87,849 - EX28DRAFT_3416 0.64 -0.6
87,849 - EX28DRAFT_3416 0.64 -0.4
87,849 - EX28DRAFT_3416 0.64 +0.3
87,849 - EX28DRAFT_3416 0.64 -0.7
87,849 - EX28DRAFT_3416 0.64 -0.4
87,849 - EX28DRAFT_3416 0.64 -0.3
87,849 - EX28DRAFT_3416 0.64 +0.2
87,850 + EX28DRAFT_3416 0.64 +0.4
87,851 - EX28DRAFT_3416 0.64 -1.8
87,901 + EX28DRAFT_3416 0.69 +0.3
87,901 + EX28DRAFT_3416 0.69 +0.3
87,901 + EX28DRAFT_3416 0.69 -1.4
87,942 + EX28DRAFT_3416 0.73 -0.2
88,041 + EX28DRAFT_3416 0.83 -0.4
88,042 - EX28DRAFT_3416 0.83 -1.0
88,049 + EX28DRAFT_3416 0.84 -0.5
88,050 - EX28DRAFT_3416 0.84 +0.4
88,052 - EX28DRAFT_3416 0.84 -0.2
88,281 - -0.0
88,281 - +0.9
88,297 + -0.6
88,300 + -1.3
88,300 + -0.4
88,309 + +0.7
88,310 - -0.6
88,310 - +1.0
88,310 - +0.5
88,394 + +0.1
88,394 + -1.7
88,394 + -0.1
88,395 - +0.5
88,395 - -0.8
88,429 + +0.8
88,475 + EX28DRAFT_3417 0.11 +0.1
88,476 - EX28DRAFT_3417 0.11 -0.3
88,477 + EX28DRAFT_3417 0.11 +0.4
88,478 - EX28DRAFT_3417 0.11 +0.1
88,478 - EX28DRAFT_3417 0.11 -0.3
88,685 + EX28DRAFT_3417 0.24 +0.0
88,686 - EX28DRAFT_3417 0.24 +0.4
88,748 + EX28DRAFT_3417 0.28 +0.1
88,878 + EX28DRAFT_3417 0.37 +0.3
89,021 - EX28DRAFT_3417 0.46 -1.6
89,070 + EX28DRAFT_3417 0.49 -0.3
89,563 + EX28DRAFT_3417 0.80 +0.1
89,726 - -0.7
89,876 + -0.4
89,877 - +0.2
90,165 + EX28DRAFT_3418 0.89 -1.0
90,295 + +0.6
90,298 - +0.7
90,308 - +0.0
90,311 + +0.4
90,311 + +0.5
90,311 + +1.0
90,312 - +0.6
90,377 + -0.7
90,474 - EX28DRAFT_3419 0.12 -0.4
90,583 + EX28DRAFT_3419 0.23 -0.7
90,584 - EX28DRAFT_3419 0.23 -1.6
90,584 - EX28DRAFT_3419 0.23 +0.1
90,584 - EX28DRAFT_3419 0.23 -0.0
90,584 - EX28DRAFT_3419 0.23 -0.5
90,584 - EX28DRAFT_3419 0.23 +0.1
90,584 - EX28DRAFT_3419 0.23 +1.1
90,638 - EX28DRAFT_3419 0.28 +2.2
90,638 - EX28DRAFT_3419 0.28 -0.4
90,668 + EX28DRAFT_3419 0.31 +0.7
90,690 - EX28DRAFT_3419 0.34 -0.2
90,690 - EX28DRAFT_3419 0.34 -1.4
90,694 + EX28DRAFT_3419 0.34 +0.1
90,695 - EX28DRAFT_3419 0.34 -0.4
90,695 - EX28DRAFT_3419 0.34 -0.3
90,695 - EX28DRAFT_3419 0.34 -0.2
90,725 - EX28DRAFT_3419 0.37 -0.4
90,725 - EX28DRAFT_3419 0.37 -0.1
90,745 + EX28DRAFT_3419 0.39 -0.2
90,746 - EX28DRAFT_3419 0.39 -0.1
90,814 + EX28DRAFT_3419 0.46 -0.4
90,814 + EX28DRAFT_3419 0.46 -3.0
90,814 + EX28DRAFT_3419 0.46 -1.7
90,815 - EX28DRAFT_3419 0.46 +0.2
90,847 + EX28DRAFT_3419 0.49 -0.8
90,848 - EX28DRAFT_3419 0.49 +1.1
90,848 - EX28DRAFT_3419 0.49 +0.0
90,848 - EX28DRAFT_3419 0.49 -0.4
90,871 + EX28DRAFT_3419 0.52 -1.1
90,871 + EX28DRAFT_3419 0.52 +2.2
90,872 - EX28DRAFT_3419 0.52 +0.1
90,872 - EX28DRAFT_3419 0.52 +0.1

Or see this region's nucleotide sequence