Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2424 and EX28DRAFT_2425 are separated by 19 nucleotides EX28DRAFT_2425 and EX28DRAFT_2426 are separated by 120 nucleotides EX28DRAFT_2426 and EX28DRAFT_2427 are separated by 404 nucleotides
EX28DRAFT_2424: EX28DRAFT_2424 - transcriptional regulator, TetR family, at 2,450,754 to 2,451,344
_2424
EX28DRAFT_2425: EX28DRAFT_2425 - Uncharacterized protein conserved in bacteria, at 2,451,364 to 2,451,702
_2425
EX28DRAFT_2426: EX28DRAFT_2426 - Nitroreductase, at 2,451,823 to 2,452,476
_2426
EX28DRAFT_2427: EX28DRAFT_2427 - filamentous hemagglutinin family N-terminal domain, at 2,452,881 to 2,455,514
_2427
Position (kb)
2451
2452
2453 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2451.005 kb on + strand, within EX28DRAFT_2424 at 2451.027 kb on + strand, within EX28DRAFT_2424 at 2451.027 kb on + strand, within EX28DRAFT_2424 at 2451.027 kb on + strand, within EX28DRAFT_2424 at 2451.028 kb on - strand, within EX28DRAFT_2424 at 2451.047 kb on + strand, within EX28DRAFT_2424 at 2451.175 kb on + strand, within EX28DRAFT_2424 at 2451.176 kb on - strand, within EX28DRAFT_2424 at 2451.179 kb on + strand, within EX28DRAFT_2424 at 2451.342 kb on + strand at 2451.342 kb on + strand at 2451.432 kb on + strand, within EX28DRAFT_2425 at 2451.745 kb on + strand at 2451.745 kb on + strand at 2451.828 kb on + strand at 2451.859 kb on - strand at 2451.929 kb on - strand, within EX28DRAFT_2426 at 2451.971 kb on + strand, within EX28DRAFT_2426 at 2451.972 kb on - strand, within EX28DRAFT_2426 at 2452.024 kb on + strand, within EX28DRAFT_2426 at 2452.025 kb on - strand, within EX28DRAFT_2426 at 2452.025 kb on - strand, within EX28DRAFT_2426 at 2452.025 kb on - strand, within EX28DRAFT_2426 at 2452.025 kb on - strand, within EX28DRAFT_2426 at 2452.025 kb on - strand, within EX28DRAFT_2426 at 2452.190 kb on - strand, within EX28DRAFT_2426 at 2452.190 kb on - strand, within EX28DRAFT_2426 at 2452.190 kb on - strand, within EX28DRAFT_2426 at 2452.522 kb on + strand at 2452.522 kb on + strand at 2452.523 kb on - strand at 2452.523 kb on - strand at 2452.523 kb on - strand at 2452.524 kb on + strand at 2452.539 kb on + strand at 2452.540 kb on - strand at 2452.540 kb on - strand at 2452.623 kb on + strand at 2452.624 kb on - strand at 2452.749 kb on + strand at 2452.818 kb on - strand at 2452.875 kb on - strand at 2452.875 kb on - strand at 2452.879 kb on - strand at 2452.881 kb on - strand at 2452.881 kb on - strand at 2452.913 kb on + strand at 2452.914 kb on - strand at 2452.928 kb on - strand at 2453.201 kb on + strand, within EX28DRAFT_2427 at 2453.204 kb on + strand, within EX28DRAFT_2427 at 2453.204 kb on + strand, within EX28DRAFT_2427 at 2453.205 kb on - strand, within EX28DRAFT_2427 at 2453.242 kb on + strand, within EX28DRAFT_2427 at 2453.243 kb on - strand, within EX28DRAFT_2427 at 2453.394 kb on + strand, within EX28DRAFT_2427 at 2453.395 kb on - strand, within EX28DRAFT_2427 at 2453.399 kb on + strand, within EX28DRAFT_2427 at 2453.433 kb on - strand, within EX28DRAFT_2427 at 2453.433 kb on - strand, within EX28DRAFT_2427
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 2,451,005 + EX28DRAFT_2424 0.42 +0.0 2,451,027 + EX28DRAFT_2424 0.46 -0.5 2,451,027 + EX28DRAFT_2424 0.46 -1.7 2,451,027 + EX28DRAFT_2424 0.46 +0.2 2,451,028 - EX28DRAFT_2424 0.46 -1.2 2,451,047 + EX28DRAFT_2424 0.50 -0.2 2,451,175 + EX28DRAFT_2424 0.71 +0.4 2,451,176 - EX28DRAFT_2424 0.71 +0.8 2,451,179 + EX28DRAFT_2424 0.72 +2.3 2,451,342 + -0.2 2,451,342 + -1.8 2,451,432 + EX28DRAFT_2425 0.20 -1.5 2,451,745 + +0.2 2,451,745 + +0.5 2,451,828 + -0.1 2,451,859 - -0.1 2,451,929 - EX28DRAFT_2426 0.16 +0.1 2,451,971 + EX28DRAFT_2426 0.23 -0.3 2,451,972 - EX28DRAFT_2426 0.23 +0.3 2,452,024 + EX28DRAFT_2426 0.31 -0.4 2,452,025 - EX28DRAFT_2426 0.31 -0.1 2,452,025 - EX28DRAFT_2426 0.31 -1.4 2,452,025 - EX28DRAFT_2426 0.31 +0.3 2,452,025 - EX28DRAFT_2426 0.31 +0.7 2,452,025 - EX28DRAFT_2426 0.31 +0.0 2,452,190 - EX28DRAFT_2426 0.56 -1.2 2,452,190 - EX28DRAFT_2426 0.56 -0.5 2,452,190 - EX28DRAFT_2426 0.56 -0.6 2,452,522 + +0.5 2,452,522 + +0.1 2,452,523 - +0.3 2,452,523 - +0.5 2,452,523 - +0.3 2,452,524 + -0.2 2,452,539 + +0.1 2,452,540 - +0.0 2,452,540 - -0.8 2,452,623 + -0.1 2,452,624 - +0.7 2,452,749 + -0.6 2,452,818 - -0.2 2,452,875 - +1.3 2,452,875 - +0.9 2,452,879 - +0.8 2,452,881 - +0.0 2,452,881 - -0.0 2,452,913 + +0.3 2,452,914 - -0.0 2,452,928 - +0.3 2,453,201 + EX28DRAFT_2427 0.12 +1.0 2,453,204 + EX28DRAFT_2427 0.12 -0.1 2,453,204 + EX28DRAFT_2427 0.12 -0.3 2,453,205 - EX28DRAFT_2427 0.12 +1.5 2,453,242 + EX28DRAFT_2427 0.14 -0.0 2,453,243 - EX28DRAFT_2427 0.14 +0.6 2,453,394 + EX28DRAFT_2427 0.19 -0.7 2,453,395 - EX28DRAFT_2427 0.20 -0.7 2,453,399 + EX28DRAFT_2427 0.20 +0.1 2,453,433 - EX28DRAFT_2427 0.21 -0.4 2,453,433 - EX28DRAFT_2427 0.21 -0.2
Or see this region's nucleotide sequence