Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2147

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2146 and EX28DRAFT_2147 are separated by 90 nucleotidesEX28DRAFT_2147 and EX28DRAFT_2148 are separated by 222 nucleotides EX28DRAFT_2146: EX28DRAFT_2146 - Alpha-glucosidases, family 31 of glycosyl hydrolases, at 2,168,490 to 2,170,853 _2146 EX28DRAFT_2147: EX28DRAFT_2147 - ATPase components of ABC transporters with duplicated ATPase domains, at 2,170,944 to 2,172,539 _2147 EX28DRAFT_2148: EX28DRAFT_2148 - Uncharacterized protein conserved in bacteria, at 2,172,762 to 2,173,682 _2148 Position (kb) 2170 2171 2172 2173Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2169.988 kb on - strand, within EX28DRAFT_2146at 2169.989 kb on + strand, within EX28DRAFT_2146at 2170.176 kb on + strand, within EX28DRAFT_2146at 2170.237 kb on - strand, within EX28DRAFT_2146at 2170.242 kb on + strand, within EX28DRAFT_2146at 2170.243 kb on - strand, within EX28DRAFT_2146at 2170.851 kb on + strandat 2170.851 kb on + strandat 2170.972 kb on + strandat 2170.973 kb on - strandat 2171.016 kb on - strandat 2171.090 kb on - strandat 2171.090 kb on - strandat 2171.231 kb on + strand, within EX28DRAFT_2147at 2171.383 kb on + strand, within EX28DRAFT_2147at 2171.708 kb on + strand, within EX28DRAFT_2147at 2171.708 kb on + strand, within EX28DRAFT_2147at 2171.821 kb on + strand, within EX28DRAFT_2147at 2171.821 kb on + strand, within EX28DRAFT_2147at 2171.821 kb on + strand, within EX28DRAFT_2147at 2171.821 kb on + strand, within EX28DRAFT_2147at 2171.822 kb on - strand, within EX28DRAFT_2147at 2171.830 kb on + strand, within EX28DRAFT_2147at 2171.882 kb on + strand, within EX28DRAFT_2147at 2172.172 kb on + strand, within EX28DRAFT_2147at 2172.198 kb on - strand, within EX28DRAFT_2147at 2172.199 kb on + strand, within EX28DRAFT_2147at 2172.232 kb on + strand, within EX28DRAFT_2147at 2172.233 kb on - strand, within EX28DRAFT_2147at 2172.534 kb on + strandat 2172.534 kb on + strandat 2172.535 kb on - strandat 2172.535 kb on - strandat 2172.691 kb on + strandat 2172.691 kb on + strandat 2172.691 kb on + strandat 2172.691 kb on + strandat 2172.692 kb on - strandat 2172.692 kb on - strandat 2172.692 kb on - strandat 2172.693 kb on + strandat 2172.694 kb on - strandat 2172.694 kb on - strandat 2172.694 kb on - strandat 2172.722 kb on - strandat 2172.745 kb on + strandat 2172.745 kb on + strandat 2172.745 kb on + strandat 2172.746 kb on - strandat 2172.746 kb on - strandat 2172.746 kb on - strandat 2172.749 kb on + strandat 2172.749 kb on + strandat 2172.776 kb on - strandat 2172.925 kb on - strand, within EX28DRAFT_2148at 2172.956 kb on + strand, within EX28DRAFT_2148at 2172.990 kb on + strand, within EX28DRAFT_2148at 2173.020 kb on - strand, within EX28DRAFT_2148at 2173.092 kb on + strand, within EX28DRAFT_2148at 2173.096 kb on - strand, within EX28DRAFT_2148at 2173.096 kb on - strand, within EX28DRAFT_2148at 2173.317 kb on + strand, within EX28DRAFT_2148at 2173.506 kb on + strand, within EX28DRAFT_2148

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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2,169,988 - EX28DRAFT_2146 0.63 -0.2
2,169,989 + EX28DRAFT_2146 0.63 +0.0
2,170,176 + EX28DRAFT_2146 0.71 -1.1
2,170,237 - EX28DRAFT_2146 0.74 -0.9
2,170,242 + EX28DRAFT_2146 0.74 -0.2
2,170,243 - EX28DRAFT_2146 0.74 +2.1
2,170,851 + -0.6
2,170,851 + -2.6
2,170,972 + -0.7
2,170,973 - -3.5
2,171,016 - +0.5
2,171,090 - -0.3
2,171,090 - -0.1
2,171,231 + EX28DRAFT_2147 0.18 -1.2
2,171,383 + EX28DRAFT_2147 0.28 -0.2
2,171,708 + EX28DRAFT_2147 0.48 -0.3
2,171,708 + EX28DRAFT_2147 0.48 -0.3
2,171,821 + EX28DRAFT_2147 0.55 -0.3
2,171,821 + EX28DRAFT_2147 0.55 +0.1
2,171,821 + EX28DRAFT_2147 0.55 +1.8
2,171,821 + EX28DRAFT_2147 0.55 +0.7
2,171,822 - EX28DRAFT_2147 0.55 +0.9
2,171,830 + EX28DRAFT_2147 0.56 -1.0
2,171,882 + EX28DRAFT_2147 0.59 -0.2
2,172,172 + EX28DRAFT_2147 0.77 +0.7
2,172,198 - EX28DRAFT_2147 0.79 -0.8
2,172,199 + EX28DRAFT_2147 0.79 +0.3
2,172,232 + EX28DRAFT_2147 0.81 -0.6
2,172,233 - EX28DRAFT_2147 0.81 -0.6
2,172,534 + +0.1
2,172,534 + -0.2
2,172,535 - +0.5
2,172,535 - +0.3
2,172,691 + +0.3
2,172,691 + +0.6
2,172,691 + +0.5
2,172,691 + +0.3
2,172,692 - +0.2
2,172,692 - -1.0
2,172,692 - -0.7
2,172,693 + -0.7
2,172,694 - +0.3
2,172,694 - +1.1
2,172,694 - -0.7
2,172,722 - +1.3
2,172,745 + +1.0
2,172,745 + -0.0
2,172,745 + +0.0
2,172,746 - +0.1
2,172,746 - +0.7
2,172,746 - +0.5
2,172,749 + -1.0
2,172,749 + -2.1
2,172,776 - -0.4
2,172,925 - EX28DRAFT_2148 0.18 -2.1
2,172,956 + EX28DRAFT_2148 0.21 -0.5
2,172,990 + EX28DRAFT_2148 0.25 +0.5
2,173,020 - EX28DRAFT_2148 0.28 -0.5
2,173,092 + EX28DRAFT_2148 0.36 -0.4
2,173,096 - EX28DRAFT_2148 0.36 +0.4
2,173,096 - EX28DRAFT_2148 0.36 -0.2
2,173,317 + EX28DRAFT_2148 0.60 +0.0
2,173,506 + EX28DRAFT_2148 0.81 +0.0

Or see this region's nucleotide sequence