Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1746

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1745 and EX28DRAFT_1746 overlap by 23 nucleotidesEX28DRAFT_1746 and EX28DRAFT_1747 are separated by 297 nucleotides EX28DRAFT_1745: EX28DRAFT_1745 - GIY-YIG catalytic domain, at 1,759,700 to 1,760,605 _1745 EX28DRAFT_1746: EX28DRAFT_1746 - Uncharacterized protein conserved in bacteria, at 1,760,583 to 1,761,140 _1746 EX28DRAFT_1747: EX28DRAFT_1747 - P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein, at 1,761,438 to 1,761,932 _1747 Position (kb) 1760 1761 1762Strain fitness (log2 ratio) -2 -1 0 1 2at 1759.715 kb on - strandat 1759.724 kb on + strandat 1759.725 kb on - strandat 1759.725 kb on - strandat 1759.778 kb on + strandat 1759.778 kb on + strandat 1759.779 kb on - strandat 1759.839 kb on - strand, within EX28DRAFT_1745at 1759.874 kb on + strand, within EX28DRAFT_1745at 1759.875 kb on - strand, within EX28DRAFT_1745at 1759.911 kb on + strand, within EX28DRAFT_1745at 1760.022 kb on + strand, within EX28DRAFT_1745at 1760.023 kb on - strand, within EX28DRAFT_1745at 1760.088 kb on + strand, within EX28DRAFT_1745at 1760.114 kb on + strand, within EX28DRAFT_1745at 1760.225 kb on + strand, within EX28DRAFT_1745at 1760.225 kb on + strand, within EX28DRAFT_1745at 1760.235 kb on + strand, within EX28DRAFT_1745at 1760.236 kb on - strand, within EX28DRAFT_1745at 1760.403 kb on + strand, within EX28DRAFT_1745at 1760.533 kb on + strandat 1760.545 kb on + strandat 1760.577 kb on + strandat 1760.578 kb on - strandat 1760.578 kb on - strandat 1760.619 kb on + strandat 1760.619 kb on + strandat 1760.620 kb on - strandat 1760.651 kb on + strand, within EX28DRAFT_1746at 1760.822 kb on + strand, within EX28DRAFT_1746at 1761.120 kb on - strandat 1761.461 kb on + strandat 1761.858 kb on - strand, within EX28DRAFT_1747at 1761.927 kb on - strandat 1762.002 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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1,759,715 - +1.9
1,759,724 + -0.2
1,759,725 - -0.2
1,759,725 - -0.8
1,759,778 + -1.7
1,759,778 + -0.4
1,759,779 - -0.1
1,759,839 - EX28DRAFT_1745 0.15 -0.2
1,759,874 + EX28DRAFT_1745 0.19 -0.2
1,759,875 - EX28DRAFT_1745 0.19 +0.3
1,759,911 + EX28DRAFT_1745 0.23 -2.3
1,760,022 + EX28DRAFT_1745 0.36 -0.2
1,760,023 - EX28DRAFT_1745 0.36 +0.4
1,760,088 + EX28DRAFT_1745 0.43 +0.3
1,760,114 + EX28DRAFT_1745 0.46 +1.3
1,760,225 + EX28DRAFT_1745 0.58 -0.6
1,760,225 + EX28DRAFT_1745 0.58 -0.6
1,760,235 + EX28DRAFT_1745 0.59 +0.5
1,760,236 - EX28DRAFT_1745 0.59 -1.5
1,760,403 + EX28DRAFT_1745 0.78 +0.3
1,760,533 + +0.8
1,760,545 + +1.5
1,760,577 + -0.3
1,760,578 - +1.0
1,760,578 - +0.3
1,760,619 + +0.3
1,760,619 + +0.1
1,760,620 - +0.1
1,760,651 + EX28DRAFT_1746 0.12 -0.9
1,760,822 + EX28DRAFT_1746 0.43 -0.7
1,761,120 - +0.4
1,761,461 + +0.0
1,761,858 - EX28DRAFT_1747 0.85 -0.3
1,761,927 - +1.7
1,762,002 + -0.6

Or see this region's nucleotide sequence