Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1745 and EX28DRAFT_1746 overlap by 23 nucleotides EX28DRAFT_1746 and EX28DRAFT_1747 are separated by 297 nucleotides
EX28DRAFT_1745: EX28DRAFT_1745 - GIY-YIG catalytic domain, at 1,759,700 to 1,760,605
_1745
EX28DRAFT_1746: EX28DRAFT_1746 - Uncharacterized protein conserved in bacteria, at 1,760,583 to 1,761,140
_1746
EX28DRAFT_1747: EX28DRAFT_1747 - P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein, at 1,761,438 to 1,761,932
_1747
Position (kb)
1760
1761
1762 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1759.715 kb on - strand at 1759.724 kb on + strand at 1759.725 kb on - strand at 1759.725 kb on - strand at 1759.778 kb on + strand at 1759.778 kb on + strand at 1759.779 kb on - strand at 1759.839 kb on - strand, within EX28DRAFT_1745 at 1759.874 kb on + strand, within EX28DRAFT_1745 at 1759.875 kb on - strand, within EX28DRAFT_1745 at 1759.911 kb on + strand, within EX28DRAFT_1745 at 1760.022 kb on + strand, within EX28DRAFT_1745 at 1760.023 kb on - strand, within EX28DRAFT_1745 at 1760.088 kb on + strand, within EX28DRAFT_1745 at 1760.114 kb on + strand, within EX28DRAFT_1745 at 1760.225 kb on + strand, within EX28DRAFT_1745 at 1760.225 kb on + strand, within EX28DRAFT_1745 at 1760.235 kb on + strand, within EX28DRAFT_1745 at 1760.236 kb on - strand, within EX28DRAFT_1745 at 1760.403 kb on + strand, within EX28DRAFT_1745 at 1760.533 kb on + strand at 1760.545 kb on + strand at 1760.577 kb on + strand at 1760.578 kb on - strand at 1760.578 kb on - strand at 1760.619 kb on + strand at 1760.619 kb on + strand at 1760.620 kb on - strand at 1760.651 kb on + strand, within EX28DRAFT_1746 at 1760.822 kb on + strand, within EX28DRAFT_1746 at 1761.120 kb on - strand at 1761.461 kb on + strand at 1761.858 kb on - strand, within EX28DRAFT_1747 at 1761.927 kb on - strand at 1762.002 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 1,759,715 - +1.9 1,759,724 + -0.2 1,759,725 - -0.2 1,759,725 - -0.8 1,759,778 + -1.7 1,759,778 + -0.4 1,759,779 - -0.1 1,759,839 - EX28DRAFT_1745 0.15 -0.2 1,759,874 + EX28DRAFT_1745 0.19 -0.2 1,759,875 - EX28DRAFT_1745 0.19 +0.3 1,759,911 + EX28DRAFT_1745 0.23 -2.3 1,760,022 + EX28DRAFT_1745 0.36 -0.2 1,760,023 - EX28DRAFT_1745 0.36 +0.4 1,760,088 + EX28DRAFT_1745 0.43 +0.3 1,760,114 + EX28DRAFT_1745 0.46 +1.3 1,760,225 + EX28DRAFT_1745 0.58 -0.6 1,760,225 + EX28DRAFT_1745 0.58 -0.6 1,760,235 + EX28DRAFT_1745 0.59 +0.5 1,760,236 - EX28DRAFT_1745 0.59 -1.5 1,760,403 + EX28DRAFT_1745 0.78 +0.3 1,760,533 + +0.8 1,760,545 + +1.5 1,760,577 + -0.3 1,760,578 - +1.0 1,760,578 - +0.3 1,760,619 + +0.3 1,760,619 + +0.1 1,760,620 - +0.1 1,760,651 + EX28DRAFT_1746 0.12 -0.9 1,760,822 + EX28DRAFT_1746 0.43 -0.7 1,761,120 - +0.4 1,761,461 + +0.0 1,761,858 - EX28DRAFT_1747 0.85 -0.3 1,761,927 - +1.7 1,762,002 + -0.6
Or see this region's nucleotide sequence