Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1140 and EX28DRAFT_1141 overlap by 16 nucleotides EX28DRAFT_1141 and EX28DRAFT_1142 overlap by 4 nucleotides
EX28DRAFT_1140: EX28DRAFT_1140 - Protein of unknown function (DUF3131), at 1,156,297 to 1,157,691
_1140
EX28DRAFT_1141: EX28DRAFT_1141 - Protein of unknown function (DUF3131), at 1,157,676 to 1,159,223
_1141
EX28DRAFT_1142: EX28DRAFT_1142 - Protein of unknown function (DUF3131), at 1,159,220 to 1,160,551
_1142
Position (kb)
1157
1158
1159
1160 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1156.704 kb on + strand, within EX28DRAFT_1140 at 1156.705 kb on - strand, within EX28DRAFT_1140 at 1156.875 kb on + strand, within EX28DRAFT_1140 at 1156.875 kb on + strand, within EX28DRAFT_1140 at 1156.875 kb on + strand, within EX28DRAFT_1140 at 1156.876 kb on - strand, within EX28DRAFT_1140 at 1156.878 kb on - strand, within EX28DRAFT_1140 at 1156.878 kb on - strand, within EX28DRAFT_1140 at 1157.151 kb on + strand, within EX28DRAFT_1140 at 1157.168 kb on + strand, within EX28DRAFT_1140 at 1157.369 kb on + strand, within EX28DRAFT_1140 at 1157.714 kb on + strand at 1158.044 kb on - strand, within EX28DRAFT_1141 at 1158.047 kb on - strand, within EX28DRAFT_1141 at 1158.100 kb on + strand, within EX28DRAFT_1141 at 1158.203 kb on - strand, within EX28DRAFT_1141 at 1158.235 kb on + strand, within EX28DRAFT_1141 at 1158.235 kb on + strand, within EX28DRAFT_1141 at 1158.236 kb on - strand, within EX28DRAFT_1141 at 1158.290 kb on + strand, within EX28DRAFT_1141 at 1158.409 kb on + strand, within EX28DRAFT_1141 at 1158.418 kb on + strand, within EX28DRAFT_1141 at 1158.436 kb on + strand, within EX28DRAFT_1141 at 1158.436 kb on + strand, within EX28DRAFT_1141 at 1158.436 kb on + strand, within EX28DRAFT_1141 at 1158.437 kb on - strand, within EX28DRAFT_1141 at 1158.437 kb on - strand, within EX28DRAFT_1141 at 1158.437 kb on - strand, within EX28DRAFT_1141 at 1158.437 kb on - strand, within EX28DRAFT_1141 at 1158.441 kb on - strand, within EX28DRAFT_1141 at 1158.441 kb on - strand, within EX28DRAFT_1141 at 1158.452 kb on + strand, within EX28DRAFT_1141 at 1158.542 kb on + strand, within EX28DRAFT_1141 at 1158.543 kb on - strand, within EX28DRAFT_1141 at 1158.574 kb on + strand, within EX28DRAFT_1141 at 1158.607 kb on + strand, within EX28DRAFT_1141 at 1158.607 kb on + strand, within EX28DRAFT_1141 at 1158.607 kb on + strand, within EX28DRAFT_1141 at 1158.640 kb on + strand, within EX28DRAFT_1141 at 1158.712 kb on + strand, within EX28DRAFT_1141 at 1158.806 kb on - strand, within EX28DRAFT_1141 at 1158.833 kb on + strand, within EX28DRAFT_1141 at 1158.835 kb on + strand, within EX28DRAFT_1141 at 1158.835 kb on + strand, within EX28DRAFT_1141 at 1158.878 kb on + strand, within EX28DRAFT_1141 at 1158.923 kb on + strand, within EX28DRAFT_1141 at 1158.924 kb on - strand, within EX28DRAFT_1141 at 1158.927 kb on + strand, within EX28DRAFT_1141 at 1158.927 kb on + strand, within EX28DRAFT_1141 at 1158.928 kb on - strand, within EX28DRAFT_1141 at 1159.017 kb on + strand, within EX28DRAFT_1141 at 1159.039 kb on + strand, within EX28DRAFT_1141 at 1159.039 kb on + strand, within EX28DRAFT_1141 at 1159.055 kb on - strand, within EX28DRAFT_1141 at 1159.302 kb on + strand at 1159.303 kb on - strand at 1159.366 kb on + strand, within EX28DRAFT_1142 at 1159.461 kb on + strand, within EX28DRAFT_1142 at 1159.566 kb on + strand, within EX28DRAFT_1142 at 1159.566 kb on + strand, within EX28DRAFT_1142 at 1159.567 kb on - strand, within EX28DRAFT_1142 at 1159.859 kb on - strand, within EX28DRAFT_1142 at 1159.870 kb on - strand, within EX28DRAFT_1142 at 1160.070 kb on - strand, within EX28DRAFT_1142 at 1160.119 kb on - strand, within EX28DRAFT_1142 at 1160.216 kb on - strand, within EX28DRAFT_1142
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 1,156,704 + EX28DRAFT_1140 0.29 -0.0 1,156,705 - EX28DRAFT_1140 0.29 +0.5 1,156,875 + EX28DRAFT_1140 0.41 +1.4 1,156,875 + EX28DRAFT_1140 0.41 -0.0 1,156,875 + EX28DRAFT_1140 0.41 -0.9 1,156,876 - EX28DRAFT_1140 0.42 -0.6 1,156,878 - EX28DRAFT_1140 0.42 +0.2 1,156,878 - EX28DRAFT_1140 0.42 +0.1 1,157,151 + EX28DRAFT_1140 0.61 -0.9 1,157,168 + EX28DRAFT_1140 0.62 +2.1 1,157,369 + EX28DRAFT_1140 0.77 -0.3 1,157,714 + +0.2 1,158,044 - EX28DRAFT_1141 0.24 -0.2 1,158,047 - EX28DRAFT_1141 0.24 +0.1 1,158,100 + EX28DRAFT_1141 0.27 -1.0 1,158,203 - EX28DRAFT_1141 0.34 +0.3 1,158,235 + EX28DRAFT_1141 0.36 -1.2 1,158,235 + EX28DRAFT_1141 0.36 +0.0 1,158,236 - EX28DRAFT_1141 0.36 -1.4 1,158,290 + EX28DRAFT_1141 0.40 -1.8 1,158,409 + EX28DRAFT_1141 0.47 -0.7 1,158,418 + EX28DRAFT_1141 0.48 +0.6 1,158,436 + EX28DRAFT_1141 0.49 +0.3 1,158,436 + EX28DRAFT_1141 0.49 -1.5 1,158,436 + EX28DRAFT_1141 0.49 +0.0 1,158,437 - EX28DRAFT_1141 0.49 -0.2 1,158,437 - EX28DRAFT_1141 0.49 +0.5 1,158,437 - EX28DRAFT_1141 0.49 -0.6 1,158,437 - EX28DRAFT_1141 0.49 +0.0 1,158,441 - EX28DRAFT_1141 0.49 +0.3 1,158,441 - EX28DRAFT_1141 0.49 +0.2 1,158,452 + EX28DRAFT_1141 0.50 -0.1 1,158,542 + EX28DRAFT_1141 0.56 +1.3 1,158,543 - EX28DRAFT_1141 0.56 -1.5 1,158,574 + EX28DRAFT_1141 0.58 +0.2 1,158,607 + EX28DRAFT_1141 0.60 +0.7 1,158,607 + EX28DRAFT_1141 0.60 +0.6 1,158,607 + EX28DRAFT_1141 0.60 +0.6 1,158,640 + EX28DRAFT_1141 0.62 -0.2 1,158,712 + EX28DRAFT_1141 0.67 +0.2 1,158,806 - EX28DRAFT_1141 0.73 -1.9 1,158,833 + EX28DRAFT_1141 0.75 -0.3 1,158,835 + EX28DRAFT_1141 0.75 -0.2 1,158,835 + EX28DRAFT_1141 0.75 +0.7 1,158,878 + EX28DRAFT_1141 0.78 -1.7 1,158,923 + EX28DRAFT_1141 0.81 -0.9 1,158,924 - EX28DRAFT_1141 0.81 -1.2 1,158,927 + EX28DRAFT_1141 0.81 +0.1 1,158,927 + EX28DRAFT_1141 0.81 +0.2 1,158,928 - EX28DRAFT_1141 0.81 -0.2 1,159,017 + EX28DRAFT_1141 0.87 -0.2 1,159,039 + EX28DRAFT_1141 0.88 +0.5 1,159,039 + EX28DRAFT_1141 0.88 +1.4 1,159,055 - EX28DRAFT_1141 0.89 -0.9 1,159,302 + -0.5 1,159,303 - -0.2 1,159,366 + EX28DRAFT_1142 0.11 -0.5 1,159,461 + EX28DRAFT_1142 0.18 -1.8 1,159,566 + EX28DRAFT_1142 0.26 +1.4 1,159,566 + EX28DRAFT_1142 0.26 -0.4 1,159,567 - EX28DRAFT_1142 0.26 -0.2 1,159,859 - EX28DRAFT_1142 0.48 -0.2 1,159,870 - EX28DRAFT_1142 0.49 +0.8 1,160,070 - EX28DRAFT_1142 0.64 +0.6 1,160,119 - EX28DRAFT_1142 0.67 +0.1 1,160,216 - EX28DRAFT_1142 0.75 +0.0
Or see this region's nucleotide sequence