Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0960 and EX28DRAFT_0961 are separated by 323 nucleotides EX28DRAFT_0961 and EX28DRAFT_0962 are separated by 88 nucleotides
EX28DRAFT_0960: EX28DRAFT_0960 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 957,917 to 959,908
_0960
EX28DRAFT_0961: EX28DRAFT_0961 - exoribonuclease II, at 960,232 to 962,166
_0961
EX28DRAFT_0962: EX28DRAFT_0962 - Uncharacterized protein conserved in bacteria, at 962,255 to 963,241
_0962
Position (kb) 960
961
962
963 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 959.260 kb on + strand, within EX28DRAFT_0960 at 959.260 kb on + strand, within EX28DRAFT_0960 at 959.361 kb on + strand, within EX28DRAFT_0960 at 959.362 kb on - strand, within EX28DRAFT_0960 at 959.437 kb on + strand, within EX28DRAFT_0960 at 959.438 kb on - strand, within EX28DRAFT_0960 at 959.438 kb on - strand, within EX28DRAFT_0960 at 959.442 kb on - strand, within EX28DRAFT_0960 at 959.442 kb on - strand, within EX28DRAFT_0960 at 959.481 kb on + strand, within EX28DRAFT_0960 at 959.500 kb on + strand, within EX28DRAFT_0960 at 959.615 kb on - strand, within EX28DRAFT_0960 at 959.728 kb on + strand at 959.944 kb on - strand at 960.020 kb on + strand at 960.020 kb on + strand at 960.021 kb on - strand at 960.025 kb on + strand at 960.025 kb on + strand at 960.025 kb on + strand at 960.096 kb on + strand at 960.101 kb on + strand at 960.106 kb on - strand at 960.106 kb on - strand at 960.109 kb on + strand at 960.110 kb on - strand at 960.110 kb on - strand at 960.141 kb on + strand at 960.142 kb on - strand at 960.330 kb on + strand at 960.662 kb on + strand, within EX28DRAFT_0961 at 960.662 kb on + strand, within EX28DRAFT_0961 at 960.692 kb on + strand, within EX28DRAFT_0961 at 960.929 kb on + strand, within EX28DRAFT_0961 at 960.929 kb on + strand, within EX28DRAFT_0961 at 961.113 kb on + strand, within EX28DRAFT_0961 at 961.409 kb on + strand, within EX28DRAFT_0961 at 961.414 kb on - strand, within EX28DRAFT_0961 at 961.545 kb on + strand, within EX28DRAFT_0961 at 962.166 kb on + strand at 962.167 kb on - strand at 962.247 kb on + strand at 962.247 kb on + strand at 962.247 kb on + strand at 962.248 kb on - strand at 962.248 kb on - strand at 962.249 kb on + strand at 962.251 kb on - strand at 962.656 kb on + strand, within EX28DRAFT_0962 at 962.753 kb on + strand, within EX28DRAFT_0962 at 962.753 kb on + strand, within EX28DRAFT_0962 at 962.769 kb on + strand, within EX28DRAFT_0962 at 962.770 kb on - strand, within EX28DRAFT_0962 at 962.770 kb on - strand, within EX28DRAFT_0962 at 962.990 kb on - strand, within EX28DRAFT_0962 at 963.007 kb on + strand, within EX28DRAFT_0962 at 963.054 kb on - strand, within EX28DRAFT_0962
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 959,260 + EX28DRAFT_0960 0.67 -0.7 959,260 + EX28DRAFT_0960 0.67 +0.0 959,361 + EX28DRAFT_0960 0.72 +0.4 959,362 - EX28DRAFT_0960 0.73 -1.2 959,437 + EX28DRAFT_0960 0.76 +0.1 959,438 - EX28DRAFT_0960 0.76 -3.1 959,438 - EX28DRAFT_0960 0.76 -2.1 959,442 - EX28DRAFT_0960 0.77 -0.8 959,442 - EX28DRAFT_0960 0.77 -0.1 959,481 + EX28DRAFT_0960 0.79 +0.0 959,500 + EX28DRAFT_0960 0.79 -0.3 959,615 - EX28DRAFT_0960 0.85 +0.4 959,728 + -0.7 959,944 - +0.2 960,020 + +0.9 960,020 + +0.4 960,021 - +0.8 960,025 + -0.5 960,025 + -0.1 960,025 + -1.1 960,096 + -1.1 960,101 + +0.2 960,106 - -0.2 960,106 - -2.1 960,109 + -0.5 960,110 - +0.2 960,110 - -0.8 960,141 + -0.1 960,142 - -0.1 960,330 + +1.5 960,662 + EX28DRAFT_0961 0.22 -2.1 960,662 + EX28DRAFT_0961 0.22 -1.0 960,692 + EX28DRAFT_0961 0.24 -0.7 960,929 + EX28DRAFT_0961 0.36 -0.7 960,929 + EX28DRAFT_0961 0.36 -0.1 961,113 + EX28DRAFT_0961 0.46 -0.2 961,409 + EX28DRAFT_0961 0.61 +0.3 961,414 - EX28DRAFT_0961 0.61 -1.4 961,545 + EX28DRAFT_0961 0.68 -1.4 962,166 + -2.1 962,167 - -1.1 962,247 + -2.1 962,247 + +0.0 962,247 + -0.6 962,248 - -0.7 962,248 - +0.2 962,249 + -0.3 962,251 - -0.4 962,656 + EX28DRAFT_0962 0.41 +0.2 962,753 + EX28DRAFT_0962 0.50 +0.9 962,753 + EX28DRAFT_0962 0.50 +0.2 962,769 + EX28DRAFT_0962 0.52 +0.4 962,770 - EX28DRAFT_0962 0.52 -0.6 962,770 - EX28DRAFT_0962 0.52 +0.2 962,990 - EX28DRAFT_0962 0.74 +0.1 963,007 + EX28DRAFT_0962 0.76 +1.3 963,054 - EX28DRAFT_0962 0.81 +2.2
Or see this region's nucleotide sequence