Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0723

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0722 and EX28DRAFT_0723 overlap by 32 nucleotidesEX28DRAFT_0723 and EX28DRAFT_0724 are separated by 132 nucleotidesEX28DRAFT_0724 and EX28DRAFT_0725 are separated by 96 nucleotides EX28DRAFT_0722: EX28DRAFT_0722 - Paraquat-inducible protein B, at 718,855 to 721,488 _0722 EX28DRAFT_0723: EX28DRAFT_0723 - integral membrane protein, PqiA family, at 721,457 to 722,740 _0723 EX28DRAFT_0724: EX28DRAFT_0724 - GAF domain-containing protein, at 722,873 to 723,370 _0724 EX28DRAFT_0725: EX28DRAFT_0725 - Activator of osmoprotectant transporter ProP, at 723,467 to 724,153 _0725 Position (kb) 721 722 723Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 720.584 kb on + strand, within EX28DRAFT_0722at 720.584 kb on + strand, within EX28DRAFT_0722at 720.585 kb on - strand, within EX28DRAFT_0722at 720.677 kb on + strand, within EX28DRAFT_0722at 720.678 kb on - strand, within EX28DRAFT_0722at 721.007 kb on - strand, within EX28DRAFT_0722at 721.007 kb on - strand, within EX28DRAFT_0722at 721.041 kb on + strand, within EX28DRAFT_0722at 721.097 kb on + strand, within EX28DRAFT_0722at 721.097 kb on + strand, within EX28DRAFT_0722at 721.097 kb on + strand, within EX28DRAFT_0722at 721.098 kb on - strand, within EX28DRAFT_0722at 721.098 kb on - strand, within EX28DRAFT_0722at 721.098 kb on - strand, within EX28DRAFT_0722at 721.098 kb on - strand, within EX28DRAFT_0722at 721.206 kb on + strand, within EX28DRAFT_0722at 721.364 kb on + strandat 721.364 kb on + strandat 721.364 kb on + strandat 721.365 kb on - strandat 721.502 kb on + strandat 721.542 kb on - strandat 721.582 kb on + strandat 721.582 kb on + strandat 721.786 kb on + strand, within EX28DRAFT_0723at 721.831 kb on + strand, within EX28DRAFT_0723at 721.846 kb on + strand, within EX28DRAFT_0723at 721.849 kb on + strand, within EX28DRAFT_0723at 721.897 kb on + strand, within EX28DRAFT_0723at 721.897 kb on + strand, within EX28DRAFT_0723at 721.898 kb on - strand, within EX28DRAFT_0723at 722.028 kb on + strand, within EX28DRAFT_0723at 722.088 kb on + strand, within EX28DRAFT_0723at 722.238 kb on + strand, within EX28DRAFT_0723at 722.239 kb on - strand, within EX28DRAFT_0723at 722.239 kb on - strand, within EX28DRAFT_0723at 722.243 kb on - strand, within EX28DRAFT_0723at 722.243 kb on - strand, within EX28DRAFT_0723at 722.243 kb on - strand, within EX28DRAFT_0723at 722.311 kb on + strand, within EX28DRAFT_0723at 722.325 kb on - strand, within EX28DRAFT_0723at 722.325 kb on - strand, within EX28DRAFT_0723at 722.325 kb on - strand, within EX28DRAFT_0723at 722.328 kb on + strand, within EX28DRAFT_0723at 722.449 kb on + strand, within EX28DRAFT_0723at 722.449 kb on + strand, within EX28DRAFT_0723at 722.450 kb on - strand, within EX28DRAFT_0723at 722.450 kb on - strand, within EX28DRAFT_0723at 722.450 kb on - strand, within EX28DRAFT_0723at 722.453 kb on + strand, within EX28DRAFT_0723at 722.466 kb on + strand, within EX28DRAFT_0723at 722.467 kb on - strand, within EX28DRAFT_0723at 722.473 kb on + strand, within EX28DRAFT_0723at 722.473 kb on + strand, within EX28DRAFT_0723at 722.474 kb on - strand, within EX28DRAFT_0723at 722.626 kb on + strandat 722.627 kb on - strandat 722.689 kb on + strandat 722.699 kb on + strandat 722.756 kb on - strandat 722.756 kb on - strandat 722.759 kb on + strandat 722.759 kb on + strandat 722.772 kb on + strandat 722.777 kb on + strandat 722.823 kb on - strandat 722.859 kb on + strandat 723.268 kb on + strand, within EX28DRAFT_0724at 723.321 kb on + strandat 723.369 kb on - strandat 723.384 kb on + strandat 723.384 kb on + strandat 723.406 kb on + strandat 723.407 kb on - strandat 723.408 kb on + strandat 723.452 kb on + strandat 723.452 kb on + strandat 723.481 kb on + strandat 723.658 kb on + strand, within EX28DRAFT_0725at 723.681 kb on - strand, within EX28DRAFT_0725

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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720,584 + EX28DRAFT_0722 0.66 +0.4
720,584 + EX28DRAFT_0722 0.66 -0.2
720,585 - EX28DRAFT_0722 0.66 +1.4
720,677 + EX28DRAFT_0722 0.69 -0.5
720,678 - EX28DRAFT_0722 0.69 -1.1
721,007 - EX28DRAFT_0722 0.82 +0.1
721,007 - EX28DRAFT_0722 0.82 +0.0
721,041 + EX28DRAFT_0722 0.83 -0.4
721,097 + EX28DRAFT_0722 0.85 +0.8
721,097 + EX28DRAFT_0722 0.85 -0.3
721,097 + EX28DRAFT_0722 0.85 +0.1
721,098 - EX28DRAFT_0722 0.85 -1.4
721,098 - EX28DRAFT_0722 0.85 -0.3
721,098 - EX28DRAFT_0722 0.85 -0.2
721,098 - EX28DRAFT_0722 0.85 +0.6
721,206 + EX28DRAFT_0722 0.89 +0.4
721,364 + -0.7
721,364 + +0.6
721,364 + -0.5
721,365 - +0.7
721,502 + -2.0
721,542 - +0.6
721,582 + +0.5
721,582 + -3.0
721,786 + EX28DRAFT_0723 0.26 +0.4
721,831 + EX28DRAFT_0723 0.29 +0.0
721,846 + EX28DRAFT_0723 0.30 +1.4
721,849 + EX28DRAFT_0723 0.31 -0.1
721,897 + EX28DRAFT_0723 0.34 -1.3
721,897 + EX28DRAFT_0723 0.34 +0.4
721,898 - EX28DRAFT_0723 0.34 -0.3
722,028 + EX28DRAFT_0723 0.44 +0.4
722,088 + EX28DRAFT_0723 0.49 +0.4
722,238 + EX28DRAFT_0723 0.61 +0.5
722,239 - EX28DRAFT_0723 0.61 -0.7
722,239 - EX28DRAFT_0723 0.61 +0.7
722,243 - EX28DRAFT_0723 0.61 +0.1
722,243 - EX28DRAFT_0723 0.61 +0.1
722,243 - EX28DRAFT_0723 0.61 +0.3
722,311 + EX28DRAFT_0723 0.67 -0.5
722,325 - EX28DRAFT_0723 0.68 +0.9
722,325 - EX28DRAFT_0723 0.68 +0.0
722,325 - EX28DRAFT_0723 0.68 +0.7
722,328 + EX28DRAFT_0723 0.68 -0.0
722,449 + EX28DRAFT_0723 0.77 +0.0
722,449 + EX28DRAFT_0723 0.77 +0.4
722,450 - EX28DRAFT_0723 0.77 +0.8
722,450 - EX28DRAFT_0723 0.77 +0.1
722,450 - EX28DRAFT_0723 0.77 -0.0
722,453 + EX28DRAFT_0723 0.78 +0.9
722,466 + EX28DRAFT_0723 0.79 +0.1
722,467 - EX28DRAFT_0723 0.79 +0.2
722,473 + EX28DRAFT_0723 0.79 -0.3
722,473 + EX28DRAFT_0723 0.79 +1.5
722,474 - EX28DRAFT_0723 0.79 -0.5
722,626 + -0.5
722,627 - -1.5
722,689 + +0.4
722,699 + +0.1
722,756 - +0.6
722,756 - -1.2
722,759 + -1.0
722,759 + +0.2
722,772 + -0.4
722,777 + +2.3
722,823 - +0.7
722,859 + +0.7
723,268 + EX28DRAFT_0724 0.79 -0.3
723,321 + +1.6
723,369 - +0.1
723,384 + +0.0
723,384 + +0.3
723,406 + -0.3
723,407 - -0.6
723,408 + +0.7
723,452 + +0.4
723,452 + +0.7
723,481 + +0.3
723,658 + EX28DRAFT_0725 0.28 -0.1
723,681 - EX28DRAFT_0725 0.31 -0.6

Or see this region's nucleotide sequence