Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0484 and EX28DRAFT_0485 are separated by 212 nucleotides EX28DRAFT_0485 and EX28DRAFT_0486 are separated by 130 nucleotides
EX28DRAFT_0484: EX28DRAFT_0484 - RND family efflux transporter, MFP subunit, at 471,540 to 472,742
_0484
EX28DRAFT_0485: EX28DRAFT_0485 - Molecular chaperone, at 472,955 to 474,307
_0485
EX28DRAFT_0486: EX28DRAFT_0486 - DNA-3-methyladenine glycosylase II (EC 3.2.2.21), at 474,438 to 475,310
_0486
EX28DRAFT_0487: EX28DRAFT_0487 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 475,275 to 478,604
_0487
Position (kb) 472
473
474
475 Strain fitness (log2 ratio) -1
0
1
2 at 472.731 kb on - strand at 472.749 kb on - strand at 472.749 kb on - strand at 472.749 kb on - strand at 472.781 kb on - strand at 472.783 kb on + strand at 472.784 kb on - strand at 472.784 kb on - strand at 472.822 kb on - strand at 472.822 kb on - strand at 472.861 kb on + strand at 472.861 kb on + strand at 472.960 kb on + strand at 472.961 kb on - strand at 472.961 kb on - strand at 472.961 kb on - strand at 473.097 kb on + strand, within EX28DRAFT_0485 at 473.097 kb on + strand, within EX28DRAFT_0485 at 473.227 kb on + strand, within EX28DRAFT_0485 at 473.228 kb on - strand, within EX28DRAFT_0485 at 473.290 kb on + strand, within EX28DRAFT_0485 at 473.608 kb on + strand, within EX28DRAFT_0485 at 473.666 kb on + strand, within EX28DRAFT_0485 at 473.667 kb on - strand, within EX28DRAFT_0485 at 473.667 kb on - strand, within EX28DRAFT_0485 at 473.667 kb on - strand, within EX28DRAFT_0485 at 473.899 kb on + strand, within EX28DRAFT_0485 at 473.997 kb on + strand, within EX28DRAFT_0485 at 473.998 kb on - strand, within EX28DRAFT_0485 at 474.022 kb on - strand, within EX28DRAFT_0485 at 474.064 kb on + strand, within EX28DRAFT_0485 at 474.065 kb on - strand, within EX28DRAFT_0485 at 474.283 kb on + strand at 474.288 kb on + strand at 474.289 kb on - strand at 474.311 kb on - strand at 474.311 kb on - strand at 474.391 kb on + strand at 474.391 kb on + strand at 474.392 kb on - strand at 474.392 kb on - strand at 474.442 kb on - strand at 474.465 kb on + strand at 474.538 kb on - strand, within EX28DRAFT_0486 at 474.541 kb on - strand, within EX28DRAFT_0486 at 474.578 kb on - strand, within EX28DRAFT_0486 at 474.609 kb on - strand, within EX28DRAFT_0486 at 474.609 kb on - strand, within EX28DRAFT_0486 at 475.063 kb on + strand, within EX28DRAFT_0486 at 475.063 kb on + strand, within EX28DRAFT_0486 at 475.063 kb on + strand, within EX28DRAFT_0486 at 475.101 kb on + strand, within EX28DRAFT_0486 at 475.153 kb on - strand, within EX28DRAFT_0486 at 475.153 kb on - strand, within EX28DRAFT_0486 at 475.247 kb on + strand at 475.248 kb on - strand at 475.248 kb on - strand at 475.248 kb on - strand at 475.248 kb on - strand at 475.254 kb on + strand at 475.255 kb on - strand at 475.256 kb on + strand at 475.291 kb on + strand at 475.292 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 472,731 - +0.7 472,749 - +0.1 472,749 - +0.5 472,749 - -0.5 472,781 - +1.2 472,783 + -0.4 472,784 - -1.1 472,784 - +0.6 472,822 - +0.3 472,822 - +1.6 472,861 + +2.5 472,861 + -0.2 472,960 + -0.6 472,961 - -1.7 472,961 - -0.2 472,961 - -0.5 473,097 + EX28DRAFT_0485 0.10 +0.7 473,097 + EX28DRAFT_0485 0.10 +0.5 473,227 + EX28DRAFT_0485 0.20 +0.1 473,228 - EX28DRAFT_0485 0.20 +0.2 473,290 + EX28DRAFT_0485 0.25 +0.0 473,608 + EX28DRAFT_0485 0.48 -0.2 473,666 + EX28DRAFT_0485 0.53 -1.1 473,667 - EX28DRAFT_0485 0.53 +0.9 473,667 - EX28DRAFT_0485 0.53 +0.1 473,667 - EX28DRAFT_0485 0.53 +0.3 473,899 + EX28DRAFT_0485 0.70 -1.2 473,997 + EX28DRAFT_0485 0.77 +0.7 473,998 - EX28DRAFT_0485 0.77 +0.3 474,022 - EX28DRAFT_0485 0.79 +0.3 474,064 + EX28DRAFT_0485 0.82 +0.4 474,065 - EX28DRAFT_0485 0.82 +0.3 474,283 + -0.7 474,288 + -1.1 474,289 - +0.3 474,311 - -0.7 474,311 - -0.9 474,391 + -0.8 474,391 + +0.2 474,392 - +0.6 474,392 - +0.3 474,442 - -0.2 474,465 + -0.4 474,538 - EX28DRAFT_0486 0.11 -0.9 474,541 - EX28DRAFT_0486 0.12 +0.5 474,578 - EX28DRAFT_0486 0.16 -0.1 474,609 - EX28DRAFT_0486 0.20 -0.6 474,609 - EX28DRAFT_0486 0.20 -0.2 475,063 + EX28DRAFT_0486 0.72 +0.6 475,063 + EX28DRAFT_0486 0.72 +0.0 475,063 + EX28DRAFT_0486 0.72 -0.4 475,101 + EX28DRAFT_0486 0.76 -0.4 475,153 - EX28DRAFT_0486 0.82 +0.0 475,153 - EX28DRAFT_0486 0.82 -0.2 475,247 + +1.5 475,248 - -1.0 475,248 - +0.4 475,248 - +0.3 475,248 - -0.3 475,254 + -0.2 475,255 - +0.1 475,256 + -0.8 475,291 + -0.5 475,292 - -0.3
Or see this region's nucleotide sequence