Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0478 and EX28DRAFT_0479 are separated by 168 nucleotides EX28DRAFT_0479 and EX28DRAFT_0480 overlap by 4 nucleotides EX28DRAFT_0480 and EX28DRAFT_0481 overlap by 4 nucleotides
EX28DRAFT_0478: EX28DRAFT_0478 - Collagenase and related proteases, at 460,275 to 461,636
_0478
EX28DRAFT_0479: EX28DRAFT_0479 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 461,805 to 462,527
_0479
EX28DRAFT_0480: EX28DRAFT_0480 - Signal transduction histidine kinase, at 462,524 to 463,927
_0480
EX28DRAFT_0481: EX28DRAFT_0481 - Arabinose efflux permease, at 463,924 to 465,339
_0481
Position (kb) 462
463
464 Strain fitness (log2 ratio) -2
-1
0
1
2 at 461.631 kb on - strand at 461.724 kb on + strand at 461.725 kb on - strand at 461.725 kb on - strand at 461.746 kb on - strand at 461.751 kb on + strand at 461.752 kb on - strand at 461.787 kb on - strand at 461.787 kb on - strand at 461.807 kb on - strand at 461.851 kb on + strand at 461.852 kb on - strand at 462.209 kb on - strand, within EX28DRAFT_0479 at 462.209 kb on - strand, within EX28DRAFT_0479 at 462.209 kb on - strand, within EX28DRAFT_0479 at 462.342 kb on + strand, within EX28DRAFT_0479 at 462.382 kb on + strand, within EX28DRAFT_0479 at 462.382 kb on + strand, within EX28DRAFT_0479 at 462.383 kb on - strand, within EX28DRAFT_0479 at 462.439 kb on - strand, within EX28DRAFT_0479 at 462.442 kb on + strand, within EX28DRAFT_0479 at 462.528 kb on - strand at 462.528 kb on - strand at 462.539 kb on + strand at 462.557 kb on + strand at 462.557 kb on + strand at 462.558 kb on - strand at 462.563 kb on + strand at 462.564 kb on - strand at 462.564 kb on - strand at 462.568 kb on + strand at 462.569 kb on - strand at 462.617 kb on - strand at 462.980 kb on - strand, within EX28DRAFT_0480 at 462.980 kb on - strand, within EX28DRAFT_0480 at 463.709 kb on - strand, within EX28DRAFT_0480 at 463.775 kb on + strand, within EX28DRAFT_0480 at 463.803 kb on + strand at 463.811 kb on - strand at 463.880 kb on + strand at 463.881 kb on - strand at 463.950 kb on + strand at 464.033 kb on + strand at 464.034 kb on - strand at 464.034 kb on - strand at 464.034 kb on - strand at 464.034 kb on - strand at 464.037 kb on + strand at 464.037 kb on + strand at 464.037 kb on + strand at 464.038 kb on - strand at 464.038 kb on - strand at 464.039 kb on + strand at 464.040 kb on - strand at 464.093 kb on + strand, within EX28DRAFT_0481 at 464.279 kb on + strand, within EX28DRAFT_0481 at 464.279 kb on + strand, within EX28DRAFT_0481 at 464.552 kb on + strand, within EX28DRAFT_0481 at 464.618 kb on + strand, within EX28DRAFT_0481 at 464.709 kb on + strand, within EX28DRAFT_0481 at 464.776 kb on - strand, within EX28DRAFT_0481 at 464.777 kb on + strand, within EX28DRAFT_0481 at 464.778 kb on - strand, within EX28DRAFT_0481 at 464.862 kb on - strand, within EX28DRAFT_0481
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 461,631 - +0.9 461,724 + +0.4 461,725 - +0.7 461,725 - +0.5 461,746 - -0.2 461,751 + -2.3 461,752 - +0.4 461,787 - -0.1 461,787 - +2.5 461,807 - +0.1 461,851 + +0.7 461,852 - -0.9 462,209 - EX28DRAFT_0479 0.56 -0.4 462,209 - EX28DRAFT_0479 0.56 +0.5 462,209 - EX28DRAFT_0479 0.56 +0.6 462,342 + EX28DRAFT_0479 0.74 +0.0 462,382 + EX28DRAFT_0479 0.80 -0.2 462,382 + EX28DRAFT_0479 0.80 -0.2 462,383 - EX28DRAFT_0479 0.80 -0.5 462,439 - EX28DRAFT_0479 0.88 -0.2 462,442 + EX28DRAFT_0479 0.88 +0.1 462,528 - -0.5 462,528 - +0.7 462,539 + -0.1 462,557 + +1.7 462,557 + +0.7 462,558 - +1.2 462,563 + +1.5 462,564 - +0.3 462,564 - +0.2 462,568 + -0.3 462,569 - -0.3 462,617 - +1.3 462,980 - EX28DRAFT_0480 0.32 -1.1 462,980 - EX28DRAFT_0480 0.32 -0.3 463,709 - EX28DRAFT_0480 0.84 -1.1 463,775 + EX28DRAFT_0480 0.89 -0.4 463,803 + +0.7 463,811 - +0.2 463,880 + +1.2 463,881 - +1.3 463,950 + +0.4 464,033 + +0.9 464,034 - -0.3 464,034 - -0.5 464,034 - +0.1 464,034 - +0.2 464,037 + -0.8 464,037 + +0.5 464,037 + +0.6 464,038 - -1.4 464,038 - -0.8 464,039 + +0.7 464,040 - +0.6 464,093 + EX28DRAFT_0481 0.12 +0.4 464,279 + EX28DRAFT_0481 0.25 -1.2 464,279 + EX28DRAFT_0481 0.25 +0.2 464,552 + EX28DRAFT_0481 0.44 -0.1 464,618 + EX28DRAFT_0481 0.49 -0.4 464,709 + EX28DRAFT_0481 0.55 -0.6 464,776 - EX28DRAFT_0481 0.60 +1.6 464,777 + EX28DRAFT_0481 0.60 -1.0 464,778 - EX28DRAFT_0481 0.60 -0.6 464,862 - EX28DRAFT_0481 0.66 +0.0
Or see this region's nucleotide sequence