Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0205

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0204 and EX28DRAFT_0205 are separated by 172 nucleotidesEX28DRAFT_0205 and EX28DRAFT_0206 overlap by 1 nucleotidesEX28DRAFT_0206 and EX28DRAFT_0207 overlap by 1 nucleotides EX28DRAFT_0204: EX28DRAFT_0204 - Dyp-type peroxidase family, at 158,474 to 159,373 _0204 EX28DRAFT_0205: EX28DRAFT_0205 - sulfate/thiosulfate-binding protein, at 159,546 to 160,559 _0205 EX28DRAFT_0206: EX28DRAFT_0206 - sulfate ABC transporter, permease protein CysT, at 160,559 to 161,392 _0206 EX28DRAFT_0207: EX28DRAFT_0207 - sulfate ABC transporter, permease protein CysW, at 161,392 to 162,267 _0207 Position (kb) 159 160 161Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 158.787 kb on + strand, within EX28DRAFT_0204at 158.842 kb on - strand, within EX28DRAFT_0204at 158.981 kb on + strand, within EX28DRAFT_0204at 158.981 kb on + strand, within EX28DRAFT_0204at 158.982 kb on - strand, within EX28DRAFT_0204at 159.065 kb on - strand, within EX28DRAFT_0204at 159.067 kb on + strand, within EX28DRAFT_0204at 159.068 kb on - strand, within EX28DRAFT_0204at 159.239 kb on + strand, within EX28DRAFT_0204at 159.241 kb on + strand, within EX28DRAFT_0204at 159.241 kb on + strand, within EX28DRAFT_0204at 159.335 kb on + strandat 159.336 kb on - strandat 159.336 kb on - strandat 159.372 kb on - strandat 159.372 kb on - strandat 159.372 kb on - strandat 159.434 kb on - strandat 159.470 kb on + strandat 159.497 kb on + strandat 159.503 kb on + strandat 159.503 kb on + strandat 159.503 kb on + strandat 159.504 kb on - strandat 159.506 kb on + strandat 159.507 kb on - strandat 159.512 kb on + strandat 159.512 kb on + strandat 159.513 kb on - strandat 159.513 kb on - strandat 159.513 kb on - strandat 159.514 kb on + strandat 159.514 kb on + strandat 159.514 kb on + strandat 159.514 kb on + strandat 159.514 kb on + strandat 159.515 kb on - strandat 159.515 kb on - strandat 159.515 kb on - strandat 159.515 kb on - strandat 159.515 kb on - strandat 159.515 kb on - strandat 159.519 kb on + strandat 159.520 kb on - strandat 159.533 kb on - strandat 159.535 kb on - strandat 159.554 kb on + strandat 159.629 kb on - strandat 159.672 kb on - strand, within EX28DRAFT_0205at 159.801 kb on + strand, within EX28DRAFT_0205at 159.802 kb on - strand, within EX28DRAFT_0205at 159.802 kb on - strand, within EX28DRAFT_0205at 160.023 kb on - strand, within EX28DRAFT_0205at 160.026 kb on + strand, within EX28DRAFT_0205at 160.350 kb on + strand, within EX28DRAFT_0205at 160.351 kb on - strand, within EX28DRAFT_0205at 160.356 kb on + strand, within EX28DRAFT_0205at 160.393 kb on - strand, within EX28DRAFT_0205at 160.393 kb on - strand, within EX28DRAFT_0205at 160.417 kb on + strand, within EX28DRAFT_0205at 160.418 kb on - strand, within EX28DRAFT_0205at 160.418 kb on - strand, within EX28DRAFT_0205at 160.436 kb on + strand, within EX28DRAFT_0205at 160.437 kb on - strand, within EX28DRAFT_0205at 160.528 kb on + strandat 160.553 kb on + strandat 160.553 kb on + strandat 160.553 kb on + strandat 160.554 kb on - strandat 160.557 kb on + strandat 160.557 kb on + strandat 160.558 kb on - strandat 160.558 kb on - strandat 160.603 kb on - strandat 160.738 kb on + strand, within EX28DRAFT_0206at 160.738 kb on + strand, within EX28DRAFT_0206at 160.739 kb on - strand, within EX28DRAFT_0206at 160.970 kb on + strand, within EX28DRAFT_0206at 160.970 kb on + strand, within EX28DRAFT_0206at 160.970 kb on + strand, within EX28DRAFT_0206at 160.971 kb on - strand, within EX28DRAFT_0206at 161.382 kb on + strandat 161.382 kb on + strandat 161.383 kb on - strandat 161.383 kb on - strandat 161.404 kb on - strandat 161.509 kb on + strand, within EX28DRAFT_0207at 161.509 kb on + strand, within EX28DRAFT_0207at 161.510 kb on - strand, within EX28DRAFT_0207at 161.510 kb on - strand, within EX28DRAFT_0207at 161.511 kb on + strand, within EX28DRAFT_0207at 161.512 kb on - strand, within EX28DRAFT_0207

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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158,787 + EX28DRAFT_0204 0.35 +0.6
158,842 - EX28DRAFT_0204 0.41 -1.5
158,981 + EX28DRAFT_0204 0.56 -0.5
158,981 + EX28DRAFT_0204 0.56 -0.0
158,982 - EX28DRAFT_0204 0.56 +1.0
159,065 - EX28DRAFT_0204 0.66 +1.3
159,067 + EX28DRAFT_0204 0.66 +0.1
159,068 - EX28DRAFT_0204 0.66 +0.6
159,239 + EX28DRAFT_0204 0.85 -0.0
159,241 + EX28DRAFT_0204 0.85 +1.5
159,241 + EX28DRAFT_0204 0.85 +0.4
159,335 + -0.3
159,336 - -0.4
159,336 - -0.2
159,372 - +0.9
159,372 - -0.3
159,372 - +0.2
159,434 - +0.1
159,470 + -0.9
159,497 + -2.3
159,503 + +2.2
159,503 + +2.9
159,503 + -1.3
159,504 - -0.8
159,506 + -0.8
159,507 - -0.6
159,512 + -0.6
159,512 + -0.7
159,513 - -0.0
159,513 - +1.1
159,513 - +0.1
159,514 + -1.1
159,514 + -0.1
159,514 + -0.7
159,514 + +1.9
159,514 + +0.2
159,515 - -0.8
159,515 - -1.1
159,515 - -1.0
159,515 - +0.1
159,515 - -0.7
159,515 - +0.9
159,519 + +0.2
159,520 - -0.9
159,533 - -0.9
159,535 - -0.3
159,554 + -0.2
159,629 - -0.6
159,672 - EX28DRAFT_0205 0.12 -1.3
159,801 + EX28DRAFT_0205 0.25 -1.3
159,802 - EX28DRAFT_0205 0.25 +0.3
159,802 - EX28DRAFT_0205 0.25 +0.1
160,023 - EX28DRAFT_0205 0.47 -0.9
160,026 + EX28DRAFT_0205 0.47 -0.2
160,350 + EX28DRAFT_0205 0.79 +0.5
160,351 - EX28DRAFT_0205 0.79 -0.6
160,356 + EX28DRAFT_0205 0.80 -1.2
160,393 - EX28DRAFT_0205 0.84 -0.7
160,393 - EX28DRAFT_0205 0.84 -1.3
160,417 + EX28DRAFT_0205 0.86 -2.8
160,418 - EX28DRAFT_0205 0.86 -1.9
160,418 - EX28DRAFT_0205 0.86 -2.1
160,436 + EX28DRAFT_0205 0.88 -0.8
160,437 - EX28DRAFT_0205 0.88 +1.3
160,528 + -0.7
160,553 + -1.1
160,553 + -0.7
160,553 + -0.7
160,554 - -0.5
160,557 + -1.4
160,557 + -0.7
160,558 - -0.3
160,558 - +0.3
160,603 - -1.1
160,738 + EX28DRAFT_0206 0.21 -0.7
160,738 + EX28DRAFT_0206 0.21 -1.5
160,739 - EX28DRAFT_0206 0.22 -0.7
160,970 + EX28DRAFT_0206 0.49 -1.8
160,970 + EX28DRAFT_0206 0.49 -0.6
160,970 + EX28DRAFT_0206 0.49 -0.3
160,971 - EX28DRAFT_0206 0.49 -0.9
161,382 + +0.4
161,382 + -0.3
161,383 - -0.9
161,383 - -0.3
161,404 - -0.0
161,509 + EX28DRAFT_0207 0.13 +1.1
161,509 + EX28DRAFT_0207 0.13 -0.7
161,510 - EX28DRAFT_0207 0.13 -1.7
161,510 - EX28DRAFT_0207 0.13 -0.7
161,511 + EX28DRAFT_0207 0.14 -0.1
161,512 - EX28DRAFT_0207 0.14 -1.1

Or see this region's nucleotide sequence