Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0064

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0063 and EX28DRAFT_0064 are separated by 35 nucleotidesEX28DRAFT_0064 and EX28DRAFT_0065 are separated by 69 nucleotidesEX28DRAFT_0065 and EX28DRAFT_0066 are separated by 204 nucleotides EX28DRAFT_0063: EX28DRAFT_0063 - Acyl-CoA synthetase (NDP forming), at 3,648 to 6,311 _0063 EX28DRAFT_0064: EX28DRAFT_0064 - Uncharacterized conserved protein, at 6,347 to 7,045 _0064 EX28DRAFT_0065: EX28DRAFT_0065 - thioredoxin, at 7,115 to 7,534 _0065 EX28DRAFT_0066: EX28DRAFT_0066 - rRNA methylases, at 7,739 to 8,869 _0066 Position (kb) 6 7 8Strain fitness (log2 ratio) -2 -1 0 1 2at 5.693 kb on - strand, within EX28DRAFT_0063at 6.017 kb on + strand, within EX28DRAFT_0063at 6.018 kb on - strand, within EX28DRAFT_0063at 6.018 kb on - strand, within EX28DRAFT_0063at 6.018 kb on - strand, within EX28DRAFT_0063at 6.069 kb on - strandat 6.083 kb on + strandat 6.158 kb on + strandat 6.159 kb on - strandat 6.160 kb on + strandat 6.160 kb on + strandat 6.160 kb on + strandat 6.161 kb on - strandat 6.191 kb on + strandat 6.349 kb on - strandat 6.386 kb on - strandat 6.409 kb on - strandat 6.706 kb on - strand, within EX28DRAFT_0064at 6.706 kb on - strand, within EX28DRAFT_0064at 6.727 kb on + strand, within EX28DRAFT_0064at 6.728 kb on - strand, within EX28DRAFT_0064at 6.965 kb on - strand, within EX28DRAFT_0064at 7.439 kb on + strand, within EX28DRAFT_0065at 7.502 kb on - strandat 7.523 kb on + strandat 7.523 kb on + strandat 7.524 kb on - strandat 7.524 kb on - strandat 7.524 kb on - strandat 7.529 kb on - strandat 7.534 kb on + strandat 7.535 kb on - strandat 7.539 kb on - strandat 7.590 kb on + strandat 7.590 kb on + strandat 7.590 kb on + strandat 7.591 kb on - strandat 7.595 kb on + strandat 7.596 kb on - strandat 7.599 kb on + strandat 7.599 kb on + strandat 7.600 kb on - strandat 7.600 kb on - strandat 7.627 kb on + strandat 7.637 kb on - strandat 7.652 kb on + strandat 7.653 kb on - strandat 7.653 kb on - strandat 7.676 kb on + strandat 7.784 kb on + strandat 7.784 kb on + strandat 7.784 kb on + strandat 7.784 kb on + strandat 7.784 kb on + strandat 7.784 kb on + strandat 7.784 kb on + strandat 7.784 kb on + strandat 7.785 kb on - strandat 7.785 kb on - strandat 7.810 kb on + strandat 7.907 kb on - strand, within EX28DRAFT_0066

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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5,693 - EX28DRAFT_0063 0.77 -0.3
6,017 + EX28DRAFT_0063 0.89 +0.5
6,018 - EX28DRAFT_0063 0.89 +0.3
6,018 - EX28DRAFT_0063 0.89 -0.0
6,018 - EX28DRAFT_0063 0.89 +0.3
6,069 - -1.0
6,083 + +2.2
6,158 + +0.2
6,159 - +0.5
6,160 + +0.8
6,160 + -0.6
6,160 + +0.3
6,161 - -0.3
6,191 + +0.1
6,349 - -0.6
6,386 - -1.5
6,409 - -0.4
6,706 - EX28DRAFT_0064 0.51 +1.6
6,706 - EX28DRAFT_0064 0.51 -0.0
6,727 + EX28DRAFT_0064 0.54 -0.0
6,728 - EX28DRAFT_0064 0.55 +0.2
6,965 - EX28DRAFT_0064 0.88 +0.7
7,439 + EX28DRAFT_0065 0.77 -1.5
7,502 - -0.5
7,523 + +0.5
7,523 + -0.4
7,524 - -0.5
7,524 - +0.3
7,524 - -0.4
7,529 - +0.7
7,534 + -0.2
7,535 - +0.9
7,539 - -1.8
7,590 + +0.3
7,590 + -0.0
7,590 + -0.2
7,591 - -1.0
7,595 + -0.1
7,596 - +0.4
7,599 + -1.3
7,599 + +0.1
7,600 - -0.9
7,600 - +0.0
7,627 + +0.7
7,637 - +0.7
7,652 + +0.1
7,653 - +0.6
7,653 - -0.2
7,676 + -0.1
7,784 + -0.8
7,784 + -0.4
7,784 + +0.9
7,784 + +0.1
7,784 + -0.3
7,784 + -0.2
7,784 + +0.1
7,784 + -0.2
7,785 - +0.7
7,785 - -0.4
7,810 + -0.1
7,907 - EX28DRAFT_0066 0.15 -0.1

Or see this region's nucleotide sequence