Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_R0053

Experiment: PYE with CHIR-090 40 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02267 and CCNA_02268 overlap by 50 nucleotidesCCNA_02268 and CCNA_R0053 are separated by 214 nucleotidesCCNA_R0053 and CCNA_02269 are separated by 101 nucleotides CCNA_02267: CCNA_02267 - serine hydrolase family protein, at 2,420,364 to 2,420,987 _02267 CCNA_02268: CCNA_02268 - laminin G domain protein, at 2,420,938 to 2,421,585 _02268 CCNA_R0053: CCNA_R0053 - tRNA-Leu, at 2,421,800 to 2,421,884 _R0053 CCNA_02269: CCNA_02269 - L-aminopeptidase/D-esterase dmpA, at 2,421,986 to 2,422,978 _02269 Position (kb) 2421 2422Strain fitness (log2 ratio) -2 -1 0 1at 2420.844 kb on + strand, within CCNA_02267at 2420.849 kb on + strand, within CCNA_02267at 2420.853 kb on + strand, within CCNA_02267at 2420.903 kb on - strand, within CCNA_02267at 2420.903 kb on - strand, within CCNA_02267at 2420.936 kb on + strandat 2421.041 kb on - strand, within CCNA_02268at 2421.055 kb on + strand, within CCNA_02268at 2421.063 kb on - strand, within CCNA_02268at 2421.069 kb on + strand, within CCNA_02268at 2421.077 kb on - strand, within CCNA_02268at 2421.079 kb on + strand, within CCNA_02268at 2421.099 kb on + strand, within CCNA_02268at 2421.100 kb on - strand, within CCNA_02268at 2421.118 kb on + strand, within CCNA_02268at 2421.139 kb on + strand, within CCNA_02268at 2421.147 kb on - strand, within CCNA_02268at 2421.147 kb on - strand, within CCNA_02268at 2421.147 kb on - strand, within CCNA_02268at 2421.152 kb on + strand, within CCNA_02268at 2421.234 kb on + strand, within CCNA_02268at 2421.236 kb on + strand, within CCNA_02268at 2421.236 kb on + strand, within CCNA_02268at 2421.236 kb on + strand, within CCNA_02268at 2421.236 kb on + strand, within CCNA_02268at 2421.237 kb on - strand, within CCNA_02268at 2421.244 kb on - strand, within CCNA_02268at 2421.244 kb on - strand, within CCNA_02268at 2421.249 kb on - strand, within CCNA_02268at 2421.307 kb on - strand, within CCNA_02268at 2421.307 kb on - strand, within CCNA_02268at 2421.334 kb on - strand, within CCNA_02268at 2421.382 kb on - strand, within CCNA_02268at 2421.383 kb on - strand, within CCNA_02268at 2421.392 kb on - strand, within CCNA_02268at 2421.474 kb on + strand, within CCNA_02268at 2421.589 kb on - strandat 2421.625 kb on + strandat 2421.630 kb on + strandat 2421.695 kb on + strandat 2421.956 kb on + strandat 2421.956 kb on + strandat 2421.956 kb on + strandat 2421.964 kb on - strandat 2421.988 kb on + strandat 2421.996 kb on - strandat 2422.029 kb on + strandat 2422.037 kb on - strandat 2422.071 kb on + strandat 2422.084 kb on + strandat 2422.085 kb on - strandat 2422.089 kb on + strand, within CCNA_02269at 2422.097 kb on - strand, within CCNA_02269at 2422.097 kb on - strand, within CCNA_02269at 2422.097 kb on - strand, within CCNA_02269at 2422.110 kb on + strand, within CCNA_02269at 2422.128 kb on - strand, within CCNA_02269at 2422.243 kb on + strand, within CCNA_02269at 2422.243 kb on + strand, within CCNA_02269at 2422.245 kb on + strand, within CCNA_02269at 2422.245 kb on + strand, within CCNA_02269at 2422.245 kb on + strand, within CCNA_02269at 2422.245 kb on + strand, within CCNA_02269at 2422.253 kb on - strand, within CCNA_02269at 2422.253 kb on - strand, within CCNA_02269at 2422.336 kb on + strand, within CCNA_02269at 2422.357 kb on - strand, within CCNA_02269at 2422.362 kb on - strand, within CCNA_02269at 2422.454 kb on - strand, within CCNA_02269at 2422.558 kb on - strand, within CCNA_02269at 2422.635 kb on + strand, within CCNA_02269at 2422.659 kb on + strand, within CCNA_02269at 2422.731 kb on + strand, within CCNA_02269at 2422.783 kb on - strand, within CCNA_02269at 2422.799 kb on + strand, within CCNA_02269

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL
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2,420,844 + CCNA_02267 0.77 -0.3
2,420,849 + CCNA_02267 0.78 +0.5
2,420,853 + CCNA_02267 0.78 +0.4
2,420,903 - CCNA_02267 0.86 -0.5
2,420,903 - CCNA_02267 0.86 -0.5
2,420,936 + -0.5
2,421,041 - CCNA_02268 0.16 -0.2
2,421,055 + CCNA_02268 0.18 +1.1
2,421,063 - CCNA_02268 0.19 +0.6
2,421,069 + CCNA_02268 0.20 -0.2
2,421,077 - CCNA_02268 0.21 +0.2
2,421,079 + CCNA_02268 0.22 -0.2
2,421,099 + CCNA_02268 0.25 -0.1
2,421,100 - CCNA_02268 0.25 -0.4
2,421,118 + CCNA_02268 0.28 +0.3
2,421,139 + CCNA_02268 0.31 +0.7
2,421,147 - CCNA_02268 0.32 +0.1
2,421,147 - CCNA_02268 0.32 +0.1
2,421,147 - CCNA_02268 0.32 +0.4
2,421,152 + CCNA_02268 0.33 +0.3
2,421,234 + CCNA_02268 0.46 +0.8
2,421,236 + CCNA_02268 0.46 -1.3
2,421,236 + CCNA_02268 0.46 -0.2
2,421,236 + CCNA_02268 0.46 -0.7
2,421,236 + CCNA_02268 0.46 +0.1
2,421,237 - CCNA_02268 0.46 -0.2
2,421,244 - CCNA_02268 0.47 -0.9
2,421,244 - CCNA_02268 0.47 +0.6
2,421,249 - CCNA_02268 0.48 +1.0
2,421,307 - CCNA_02268 0.57 +0.2
2,421,307 - CCNA_02268 0.57 -1.0
2,421,334 - CCNA_02268 0.61 +0.1
2,421,382 - CCNA_02268 0.69 -0.1
2,421,383 - CCNA_02268 0.69 +0.9
2,421,392 - CCNA_02268 0.70 -0.1
2,421,474 + CCNA_02268 0.83 +0.6
2,421,589 - -0.7
2,421,625 + +0.5
2,421,630 + +0.0
2,421,695 + +0.7
2,421,956 + -0.2
2,421,956 + -0.5
2,421,956 + +0.5
2,421,964 - -0.3
2,421,988 + -0.0
2,421,996 - +0.3
2,422,029 + +0.7
2,422,037 - +0.8
2,422,071 + -1.0
2,422,084 + +0.1
2,422,085 - -0.4
2,422,089 + CCNA_02269 0.10 +0.3
2,422,097 - CCNA_02269 0.11 -0.7
2,422,097 - CCNA_02269 0.11 -0.3
2,422,097 - CCNA_02269 0.11 -1.3
2,422,110 + CCNA_02269 0.12 -2.6
2,422,128 - CCNA_02269 0.14 +0.4
2,422,243 + CCNA_02269 0.26 +0.8
2,422,243 + CCNA_02269 0.26 +1.2
2,422,245 + CCNA_02269 0.26 -1.0
2,422,245 + CCNA_02269 0.26 -0.1
2,422,245 + CCNA_02269 0.26 -0.1
2,422,245 + CCNA_02269 0.26 -0.5
2,422,253 - CCNA_02269 0.27 -0.3
2,422,253 - CCNA_02269 0.27 -0.3
2,422,336 + CCNA_02269 0.35 -0.0
2,422,357 - CCNA_02269 0.37 +0.1
2,422,362 - CCNA_02269 0.38 -0.5
2,422,454 - CCNA_02269 0.47 +0.6
2,422,558 - CCNA_02269 0.58 +0.6
2,422,635 + CCNA_02269 0.65 -0.1
2,422,659 + CCNA_02269 0.68 +0.3
2,422,731 + CCNA_02269 0.75 +0.4
2,422,783 - CCNA_02269 0.80 -0.7
2,422,799 + CCNA_02269 0.82 +0.2

Or see this region's nucleotide sequence