Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03925

Experiment: PYE with CHIR-090 40 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00623 and CCNA_03925 overlap by 1252 nucleotides CCNA_00623: CCNA_00623 - PAS-family sensor histidine kinase, at 666,944 to 669,151 _00623 CCNA_03925: CCNA_03925 - hypothetical protein, at 667,900 to 668,223 _03925 Position (kb) 667 668 669Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 666.906 kb on + strandat 666.906 kb on + strandat 666.914 kb on - strandat 666.914 kb on - strandat 666.914 kb on - strandat 666.916 kb on + strandat 666.916 kb on + strandat 666.916 kb on + strandat 666.916 kb on + strandat 666.916 kb on + strandat 666.916 kb on + strandat 666.916 kb on + strandat 666.916 kb on + strandat 666.916 kb on + strandat 666.916 kb on + strandat 666.916 kb on + strandat 666.916 kb on + strandat 666.916 kb on + strandat 666.916 kb on + strandat 666.916 kb on + strandat 666.916 kb on + strandat 666.916 kb on + strandat 666.916 kb on + strandat 666.916 kb on + strandat 666.924 kb on - strandat 666.924 kb on - strandat 666.924 kb on - strandat 666.924 kb on - strandat 666.924 kb on - strandat 666.924 kb on - strandat 666.924 kb on - strandat 666.924 kb on - strandat 666.924 kb on - strandat 666.924 kb on - strandat 666.924 kb on - strandat 666.924 kb on - strandat 666.924 kb on - strandat 666.925 kb on - strandat 666.940 kb on + strandat 666.940 kb on + strandat 666.948 kb on + strandat 666.948 kb on + strandat 666.948 kb on + strandat 666.948 kb on - strandat 666.956 kb on - strandat 666.956 kb on - strandat 666.968 kb on - strandat 666.986 kb on + strandat 666.989 kb on + strandat 667.006 kb on - strandat 667.035 kb on + strandat 667.035 kb on + strandat 667.061 kb on + strandat 667.073 kb on + strandat 667.078 kb on + strandat 667.084 kb on + strandat 667.084 kb on + strandat 667.121 kb on - strandat 667.165 kb on + strand, within CCNA_00623at 667.211 kb on + strand, within CCNA_00623at 667.219 kb on - strand, within CCNA_00623at 667.236 kb on - strand, within CCNA_00623at 667.260 kb on + strand, within CCNA_00623at 667.260 kb on + strand, within CCNA_00623at 667.280 kb on - strand, within CCNA_00623at 667.285 kb on - strand, within CCNA_00623at 667.292 kb on + strand, within CCNA_00623at 667.301 kb on - strand, within CCNA_00623at 667.301 kb on - strand, within CCNA_00623at 667.358 kb on - strand, within CCNA_00623at 667.358 kb on - strand, within CCNA_00623at 667.358 kb on - strand, within CCNA_00623at 667.401 kb on - strand, within CCNA_00623at 667.411 kb on - strand, within CCNA_00623at 667.427 kb on + strand, within CCNA_00623at 667.478 kb on - strand, within CCNA_00623at 667.486 kb on + strand, within CCNA_00623at 667.489 kb on - strand, within CCNA_00623at 667.549 kb on + strand, within CCNA_00623at 667.549 kb on + strand, within CCNA_00623at 667.554 kb on + strand, within CCNA_00623at 667.562 kb on - strand, within CCNA_00623at 667.562 kb on - strand, within CCNA_00623at 667.572 kb on - strand, within CCNA_00623at 667.603 kb on + strand, within CCNA_00623at 667.644 kb on + strand, within CCNA_00623at 667.652 kb on - strand, within CCNA_00623at 667.652 kb on - strand, within CCNA_00623at 667.672 kb on + strand, within CCNA_00623at 667.672 kb on + strand, within CCNA_00623at 667.672 kb on + strand, within CCNA_00623at 667.680 kb on - strand, within CCNA_00623at 667.680 kb on - strand, within CCNA_00623at 667.701 kb on + strand, within CCNA_00623at 667.720 kb on + strand, within CCNA_00623at 667.720 kb on + strand, within CCNA_00623at 667.720 kb on + strand, within CCNA_00623at 667.720 kb on + strand, within CCNA_00623at 667.720 kb on + strand, within CCNA_00623at 667.728 kb on - strand, within CCNA_00623at 667.728 kb on - strand, within CCNA_00623at 667.743 kb on - strand, within CCNA_00623at 667.749 kb on + strand, within CCNA_00623at 667.762 kb on - strand, within CCNA_00623at 667.769 kb on + strand, within CCNA_00623at 667.769 kb on + strand, within CCNA_00623at 667.788 kb on + strand, within CCNA_00623at 667.793 kb on + strand, within CCNA_00623at 667.796 kb on - strand, within CCNA_00623at 667.800 kb on - strand, within CCNA_00623at 667.830 kb on + strand, within CCNA_00623at 667.859 kb on + strand, within CCNA_00623at 667.859 kb on + strand, within CCNA_00623at 667.867 kb on - strand, within CCNA_00623at 667.913 kb on - strandat 667.915 kb on + strandat 667.923 kb on - strandat 667.923 kb on - strandat 667.923 kb on - strandat 667.947 kb on + strandat 667.949 kb on + strandat 667.958 kb on + strandat 667.964 kb on + strandat 667.965 kb on + strandat 667.966 kb on - strandat 667.971 kb on - strandat 667.994 kb on - strandat 667.998 kb on + strandat 667.998 kb on + strandat 667.998 kb on + strandat 668.006 kb on - strandat 668.008 kb on + strandat 668.008 kb on - strandat 668.026 kb on + strandat 668.029 kb on - strandat 668.058 kb on - strandat 668.096 kb on + strandat 668.096 kb on + strandat 668.096 kb on + strandat 668.096 kb on + strandat 668.096 kb on + strandat 668.096 kb on + strandat 668.096 kb on + strandat 668.096 kb on + strandat 668.104 kb on - strandat 668.104 kb on - strandat 668.104 kb on - strandat 668.104 kb on - strandat 668.104 kb on - strandat 668.104 kb on - strandat 668.104 kb on - strandat 668.128 kb on + strandat 668.128 kb on + strandat 668.131 kb on - strandat 668.136 kb on - strandat 668.136 kb on - strandat 668.136 kb on - strandat 668.196 kb on + strandat 668.206 kb on + strandat 668.239 kb on + strand, within CCNA_00623at 668.317 kb on - strand, within CCNA_00623at 668.317 kb on - strand, within CCNA_00623at 668.319 kb on + strand, within CCNA_00623at 668.339 kb on + strand, within CCNA_00623at 668.340 kb on - strand, within CCNA_00623at 668.345 kb on + strand, within CCNA_00623at 668.346 kb on + strand, within CCNA_00623at 668.346 kb on + strand, within CCNA_00623at 668.347 kb on - strand, within CCNA_00623at 668.347 kb on - strand, within CCNA_00623at 668.347 kb on - strand, within CCNA_00623at 668.352 kb on - strand, within CCNA_00623at 668.361 kb on + strand, within CCNA_00623at 668.369 kb on - strand, within CCNA_00623at 668.387 kb on + strand, within CCNA_00623at 668.387 kb on + strand, within CCNA_00623at 668.387 kb on + strand, within CCNA_00623at 668.387 kb on + strand, within CCNA_00623at 668.395 kb on - strand, within CCNA_00623at 668.414 kb on - strand, within CCNA_00623at 668.461 kb on - strand, within CCNA_00623at 668.461 kb on - strand, within CCNA_00623at 668.463 kb on + strand, within CCNA_00623at 668.463 kb on + strand, within CCNA_00623at 668.463 kb on + strand, within CCNA_00623at 668.463 kb on + strand, within CCNA_00623at 668.463 kb on + strand, within CCNA_00623at 668.477 kb on + strand, within CCNA_00623at 668.477 kb on + strand, within CCNA_00623at 668.480 kb on - strand, within CCNA_00623at 668.533 kb on - strand, within CCNA_00623at 668.550 kb on - strand, within CCNA_00623at 668.550 kb on - strand, within CCNA_00623at 668.594 kb on - strand, within CCNA_00623at 668.615 kb on + strand, within CCNA_00623at 668.615 kb on + strand, within CCNA_00623at 668.615 kb on + strand, within CCNA_00623at 668.623 kb on - strand, within CCNA_00623at 668.623 kb on - strand, within CCNA_00623at 668.623 kb on - strand, within CCNA_00623at 668.623 kb on - strand, within CCNA_00623at 668.650 kb on + strand, within CCNA_00623at 668.650 kb on + strand, within CCNA_00623at 668.661 kb on + strand, within CCNA_00623at 668.664 kb on + strand, within CCNA_00623at 668.710 kb on + strand, within CCNA_00623at 668.710 kb on + strand, within CCNA_00623at 668.718 kb on - strand, within CCNA_00623at 668.725 kb on - strand, within CCNA_00623at 668.738 kb on + strand, within CCNA_00623at 668.738 kb on + strand, within CCNA_00623at 668.741 kb on + strand, within CCNA_00623at 668.746 kb on - strand, within CCNA_00623at 668.746 kb on - strand, within CCNA_00623at 668.746 kb on - strand, within CCNA_00623at 668.778 kb on - strand, within CCNA_00623at 668.794 kb on - strand, within CCNA_00623at 668.807 kb on + strand, within CCNA_00623at 668.807 kb on + strand, within CCNA_00623at 668.828 kb on - strand, within CCNA_00623at 668.833 kb on - strand, within CCNA_00623at 668.852 kb on + strand, within CCNA_00623at 668.857 kb on + strand, within CCNA_00623at 668.857 kb on + strand, within CCNA_00623at 668.860 kb on - strand, within CCNA_00623at 668.865 kb on - strand, within CCNA_00623at 668.865 kb on - strand, within CCNA_00623at 668.865 kb on - strand, within CCNA_00623at 668.905 kb on + strand, within CCNA_00623at 668.912 kb on + strand, within CCNA_00623at 668.915 kb on + strand, within CCNA_00623at 668.946 kb on + strandat 669.036 kb on - strandat 669.072 kb on - strandat 669.107 kb on + strandat 669.109 kb on - strandat 669.115 kb on - strandat 669.131 kb on - strandat 669.133 kb on - strandat 669.146 kb on + strandat 669.146 kb on + strandat 669.154 kb on - strandat 669.154 kb on - strandat 669.154 kb on - strandat 669.154 kb on - strandat 669.154 kb on - strandat 669.154 kb on - strandat 669.154 kb on - strandat 669.154 kb on - strandat 669.163 kb on - strandat 669.199 kb on - strandat 669.213 kb on + strandat 669.214 kb on - strandat 669.222 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL
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666,906 + -0.3
666,906 + -0.8
666,914 - -0.9
666,914 - +0.8
666,914 - +0.4
666,916 + -0.4
666,916 + +0.6
666,916 + -0.6
666,916 + -1.3
666,916 + -1.5
666,916 + -0.6
666,916 + -0.0
666,916 + -0.1
666,916 + -0.3
666,916 + +0.2
666,916 + +0.1
666,916 + +0.0
666,916 + +0.0
666,916 + -0.0
666,916 + -2.0
666,916 + +1.3
666,916 + +0.6
666,916 + -1.2
666,916 + -0.9
666,924 - +0.0
666,924 - -0.9
666,924 - -0.3
666,924 - -0.5
666,924 - -1.1
666,924 - -0.5
666,924 - +0.1
666,924 - +0.3
666,924 - -0.3
666,924 - +0.8
666,924 - -1.5
666,924 - +0.4
666,924 - +0.1
666,925 - -1.0
666,940 + +1.3
666,940 + -0.8
666,948 + +0.1
666,948 + +0.8
666,948 + -1.4
666,948 - -0.3
666,956 - -0.0
666,956 - -0.6
666,968 - +0.3
666,986 + +0.8
666,989 + -1.2
667,006 - -0.0
667,035 + -0.2
667,035 + -1.8
667,061 + -0.5
667,073 + -0.1
667,078 + -0.7
667,084 + +1.2
667,084 + +0.2
667,121 - -0.3
667,165 + CCNA_00623 0.10 -0.2
667,211 + CCNA_00623 0.12 -1.2
667,219 - CCNA_00623 0.12 +0.8
667,236 - CCNA_00623 0.13 +0.3
667,260 + CCNA_00623 0.14 +2.8
667,260 + CCNA_00623 0.14 -0.3
667,280 - CCNA_00623 0.15 +0.1
667,285 - CCNA_00623 0.15 -0.4
667,292 + CCNA_00623 0.16 -0.1
667,301 - CCNA_00623 0.16 -0.1
667,301 - CCNA_00623 0.16 -1.1
667,358 - CCNA_00623 0.19 +0.1
667,358 - CCNA_00623 0.19 +0.1
667,358 - CCNA_00623 0.19 +0.3
667,401 - CCNA_00623 0.21 -0.2
667,411 - CCNA_00623 0.21 +0.6
667,427 + CCNA_00623 0.22 -0.1
667,478 - CCNA_00623 0.24 +0.3
667,486 + CCNA_00623 0.25 +0.3
667,489 - CCNA_00623 0.25 +0.1
667,549 + CCNA_00623 0.27 +0.0
667,549 + CCNA_00623 0.27 +0.5
667,554 + CCNA_00623 0.28 +1.8
667,562 - CCNA_00623 0.28 -0.4
667,562 - CCNA_00623 0.28 -0.8
667,572 - CCNA_00623 0.28 -0.8
667,603 + CCNA_00623 0.30 +1.3
667,644 + CCNA_00623 0.32 -0.2
667,652 - CCNA_00623 0.32 +0.0
667,652 - CCNA_00623 0.32 -0.8
667,672 + CCNA_00623 0.33 -1.1
667,672 + CCNA_00623 0.33 +0.1
667,672 + CCNA_00623 0.33 -0.4
667,680 - CCNA_00623 0.33 +0.7
667,680 - CCNA_00623 0.33 -0.1
667,701 + CCNA_00623 0.34 +0.1
667,720 + CCNA_00623 0.35 +0.3
667,720 + CCNA_00623 0.35 -0.2
667,720 + CCNA_00623 0.35 +1.3
667,720 + CCNA_00623 0.35 +0.8
667,720 + CCNA_00623 0.35 +0.0
667,728 - CCNA_00623 0.36 +0.1
667,728 - CCNA_00623 0.36 +0.1
667,743 - CCNA_00623 0.36 +0.2
667,749 + CCNA_00623 0.36 +0.2
667,762 - CCNA_00623 0.37 -0.0
667,769 + CCNA_00623 0.37 -0.1
667,769 + CCNA_00623 0.37 +0.7
667,788 + CCNA_00623 0.38 +0.2
667,793 + CCNA_00623 0.38 +0.1
667,796 - CCNA_00623 0.39 -0.5
667,800 - CCNA_00623 0.39 +0.5
667,830 + CCNA_00623 0.40 -0.4
667,859 + CCNA_00623 0.41 -0.1
667,859 + CCNA_00623 0.41 -1.1
667,867 - CCNA_00623 0.42 +0.9
667,913 - -0.1
667,915 + -0.9
667,923 - +0.3
667,923 - -0.9
667,923 - +0.2
667,947 + -1.7
667,949 + -0.5
667,958 + +0.0
667,964 + -0.4
667,965 + -0.3
667,966 - +0.4
667,971 - +0.0
667,994 - +0.8
667,998 + -0.7
667,998 + +0.2
667,998 + -0.1
668,006 - -1.2
668,008 + +0.1
668,008 - -0.1
668,026 + +0.1
668,029 - -0.0
668,058 - +0.1
668,096 + +0.7
668,096 + -0.6
668,096 + +0.4
668,096 + +0.6
668,096 + -2.0
668,096 + +0.1
668,096 + +1.0
668,096 + +0.4
668,104 - +0.2
668,104 - +0.2
668,104 - +0.6
668,104 - +0.6
668,104 - +0.2
668,104 - +0.6
668,104 - +0.5
668,128 + -0.5
668,128 + +1.3
668,131 - +0.4
668,136 - -0.0
668,136 - -0.4
668,136 - -0.5
668,196 + +0.8
668,206 + +0.4
668,239 + CCNA_00623 0.59 -0.1
668,317 - CCNA_00623 0.62 -0.4
668,317 - CCNA_00623 0.62 -0.5
668,319 + CCNA_00623 0.62 -1.5
668,339 + CCNA_00623 0.63 -0.3
668,340 - CCNA_00623 0.63 +0.9
668,345 + CCNA_00623 0.63 -0.8
668,346 + CCNA_00623 0.63 +0.4
668,346 + CCNA_00623 0.63 +0.1
668,347 - CCNA_00623 0.64 -3.6
668,347 - CCNA_00623 0.64 -0.7
668,347 - CCNA_00623 0.64 +0.3
668,352 - CCNA_00623 0.64 -1.4
668,361 + CCNA_00623 0.64 +0.4
668,369 - CCNA_00623 0.65 +1.0
668,387 + CCNA_00623 0.65 -0.7
668,387 + CCNA_00623 0.65 -0.4
668,387 + CCNA_00623 0.65 -0.0
668,387 + CCNA_00623 0.65 -0.6
668,395 - CCNA_00623 0.66 +1.2
668,414 - CCNA_00623 0.67 -0.8
668,461 - CCNA_00623 0.69 +0.3
668,461 - CCNA_00623 0.69 +0.3
668,463 + CCNA_00623 0.69 -0.1
668,463 + CCNA_00623 0.69 +0.1
668,463 + CCNA_00623 0.69 -0.4
668,463 + CCNA_00623 0.69 +0.9
668,463 + CCNA_00623 0.69 +1.5
668,477 + CCNA_00623 0.69 +0.4
668,477 + CCNA_00623 0.69 +0.3
668,480 - CCNA_00623 0.70 -0.9
668,533 - CCNA_00623 0.72 -0.6
668,550 - CCNA_00623 0.73 +0.4
668,550 - CCNA_00623 0.73 -0.1
668,594 - CCNA_00623 0.75 -0.8
668,615 + CCNA_00623 0.76 +0.5
668,615 + CCNA_00623 0.76 -0.3
668,615 + CCNA_00623 0.76 -0.9
668,623 - CCNA_00623 0.76 +0.8
668,623 - CCNA_00623 0.76 -0.7
668,623 - CCNA_00623 0.76 +0.4
668,623 - CCNA_00623 0.76 -1.4
668,650 + CCNA_00623 0.77 -0.8
668,650 + CCNA_00623 0.77 +0.3
668,661 + CCNA_00623 0.78 +1.3
668,664 + CCNA_00623 0.78 -1.4
668,710 + CCNA_00623 0.80 +0.2
668,710 + CCNA_00623 0.80 +0.9
668,718 - CCNA_00623 0.80 -2.3
668,725 - CCNA_00623 0.81 +1.4
668,738 + CCNA_00623 0.81 +0.4
668,738 + CCNA_00623 0.81 -0.8
668,741 + CCNA_00623 0.81 -0.4
668,746 - CCNA_00623 0.82 -1.6
668,746 - CCNA_00623 0.82 +0.9
668,746 - CCNA_00623 0.82 -0.1
668,778 - CCNA_00623 0.83 -0.1
668,794 - CCNA_00623 0.84 +0.7
668,807 + CCNA_00623 0.84 -0.0
668,807 + CCNA_00623 0.84 +1.0
668,828 - CCNA_00623 0.85 +0.2
668,833 - CCNA_00623 0.86 -1.5
668,852 + CCNA_00623 0.86 +1.4
668,857 + CCNA_00623 0.87 +0.3
668,857 + CCNA_00623 0.87 +0.8
668,860 - CCNA_00623 0.87 +0.4
668,865 - CCNA_00623 0.87 +0.0
668,865 - CCNA_00623 0.87 -0.7
668,865 - CCNA_00623 0.87 +0.4
668,905 + CCNA_00623 0.89 +0.8
668,912 + CCNA_00623 0.89 -1.1
668,915 + CCNA_00623 0.89 +1.1
668,946 + +0.6
669,036 - -0.5
669,072 - +1.0
669,107 + +1.1
669,109 - +3.1
669,115 - -0.4
669,131 - -1.3
669,133 - -0.3
669,146 + +0.5
669,146 + -1.0
669,154 - -0.3
669,154 - -0.6
669,154 - +0.1
669,154 - +0.8
669,154 - +0.0
669,154 - -0.6
669,154 - -0.1
669,154 - +0.0
669,163 - +0.0
669,199 - +0.1
669,213 + +0.9
669,214 - -0.0
669,222 - -0.6

Or see this region's nucleotide sequence