Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03837

Experiment: PYE with CHIR-090 40 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03835 and CCNA_03836 are separated by 70 nucleotidesCCNA_03836 and CCNA_03837 are separated by 70 nucleotidesCCNA_03837 and CCNA_03838 are separated by 72 nucleotides CCNA_03835: CCNA_03835 - 3-oxoacyl-(acyl-carrier-protein) synthase, at 4,000,678 to 4,001,889 _03835 CCNA_03836: CCNA_03836 - 3-hydroxydecanoyl-(acyl-carrier-protein) dehydratase, at 4,001,960 to 4,002,472 _03836 CCNA_03837: CCNA_03837 - bacterial SH3 domain protein, at 4,002,543 to 4,003,088 _03837 CCNA_03838: CCNA_03838 - gluconate 2-dehydrogenase/glyoxylate reductase/hydroxypyruvate reductase, at 4,003,161 to 4,004,147 _03838 Position (kb) 4002 4003 4004Strain fitness (log2 ratio) -2 -1 0 1at 4001.673 kb on - strand, within CCNA_03835at 4001.673 kb on - strand, within CCNA_03835at 4001.934 kb on + strandat 4001.934 kb on + strandat 4001.934 kb on + strandat 4001.934 kb on + strandat 4001.934 kb on + strandat 4001.934 kb on + strandat 4001.934 kb on + strandat 4001.942 kb on - strandat 4001.942 kb on - strandat 4001.942 kb on - strandat 4001.942 kb on - strandat 4001.942 kb on - strandat 4001.942 kb on - strandat 4001.958 kb on + strandat 4002.459 kb on + strandat 4002.482 kb on - strandat 4002.509 kb on + strandat 4002.511 kb on - strandat 4002.540 kb on + strandat 4002.548 kb on - strandat 4003.044 kb on + strandat 4003.044 kb on + strandat 4003.044 kb on + strandat 4003.044 kb on + strandat 4003.044 kb on + strandat 4003.052 kb on - strandat 4003.052 kb on - strandat 4003.083 kb on - strandat 4003.100 kb on - strandat 4003.105 kb on - strandat 4003.105 kb on - strandat 4003.157 kb on + strandat 4003.157 kb on + strandat 4003.157 kb on + strandat 4003.165 kb on - strandat 4003.165 kb on - strandat 4003.165 kb on - strandat 4003.174 kb on + strandat 4003.200 kb on - strandat 4003.207 kb on + strandat 4003.233 kb on - strandat 4003.235 kb on + strandat 4003.241 kb on - strandat 4003.243 kb on - strandat 4003.243 kb on - strandat 4003.253 kb on - strandat 4003.265 kb on + strand, within CCNA_03838at 4003.273 kb on - strand, within CCNA_03838at 4003.372 kb on + strand, within CCNA_03838at 4003.372 kb on + strand, within CCNA_03838at 4003.372 kb on + strand, within CCNA_03838at 4003.373 kb on + strand, within CCNA_03838at 4003.380 kb on - strand, within CCNA_03838at 4003.380 kb on - strand, within CCNA_03838at 4003.380 kb on - strand, within CCNA_03838at 4003.381 kb on - strand, within CCNA_03838at 4003.428 kb on + strand, within CCNA_03838at 4003.436 kb on - strand, within CCNA_03838at 4003.467 kb on - strand, within CCNA_03838at 4003.496 kb on - strand, within CCNA_03838at 4003.501 kb on - strand, within CCNA_03838at 4003.513 kb on - strand, within CCNA_03838at 4003.513 kb on - strand, within CCNA_03838at 4003.513 kb on - strand, within CCNA_03838at 4003.547 kb on + strand, within CCNA_03838at 4003.693 kb on + strand, within CCNA_03838at 4003.716 kb on - strand, within CCNA_03838at 4003.731 kb on + strand, within CCNA_03838at 4003.731 kb on + strand, within CCNA_03838at 4003.736 kb on + strand, within CCNA_03838at 4003.736 kb on + strand, within CCNA_03838at 4003.751 kb on + strand, within CCNA_03838at 4003.778 kb on + strand, within CCNA_03838at 4003.780 kb on - strand, within CCNA_03838at 4003.801 kb on - strand, within CCNA_03838at 4003.808 kb on + strand, within CCNA_03838at 4003.808 kb on + strand, within CCNA_03838at 4003.819 kb on + strand, within CCNA_03838at 4003.874 kb on + strand, within CCNA_03838at 4003.874 kb on + strand, within CCNA_03838at 4003.874 kb on + strand, within CCNA_03838at 4003.882 kb on - strand, within CCNA_03838at 4003.882 kb on - strand, within CCNA_03838at 4003.882 kb on - strand, within CCNA_03838at 4003.882 kb on - strand, within CCNA_03838at 4003.897 kb on - strand, within CCNA_03838at 4003.911 kb on + strand, within CCNA_03838at 4003.911 kb on + strand, within CCNA_03838at 4003.916 kb on + strand, within CCNA_03838at 4003.924 kb on - strand, within CCNA_03838at 4003.936 kb on - strand, within CCNA_03838at 4003.995 kb on - strand, within CCNA_03838at 4004.006 kb on + strand, within CCNA_03838at 4004.006 kb on + strand, within CCNA_03838at 4004.006 kb on + strand, within CCNA_03838at 4004.006 kb on + strand, within CCNA_03838at 4004.006 kb on + strand, within CCNA_03838at 4004.014 kb on - strand, within CCNA_03838at 4004.014 kb on - strand, within CCNA_03838at 4004.014 kb on - strand, within CCNA_03838at 4004.014 kb on - strand, within CCNA_03838at 4004.042 kb on - strand, within CCNA_03838at 4004.046 kb on + strand, within CCNA_03838at 4004.054 kb on - strandat 4004.064 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL
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4,001,673 - CCNA_03835 0.82 +0.0
4,001,673 - CCNA_03835 0.82 +0.3
4,001,934 + -0.3
4,001,934 + +0.5
4,001,934 + -0.9
4,001,934 + -0.4
4,001,934 + -0.5
4,001,934 + -0.4
4,001,934 + -1.0
4,001,942 - +0.2
4,001,942 - -0.0
4,001,942 - -0.5
4,001,942 - +0.0
4,001,942 - +0.5
4,001,942 - +0.2
4,001,958 + -0.3
4,002,459 + -0.5
4,002,482 - -1.1
4,002,509 + +0.0
4,002,511 - +1.2
4,002,540 + -0.2
4,002,548 - -0.2
4,003,044 + -0.9
4,003,044 + -2.0
4,003,044 + -0.5
4,003,044 + -0.3
4,003,044 + -0.3
4,003,052 - -0.6
4,003,052 - +1.2
4,003,083 - -0.2
4,003,100 - +0.9
4,003,105 - +0.4
4,003,105 - -0.1
4,003,157 + -0.3
4,003,157 + +0.0
4,003,157 + +0.1
4,003,165 - -0.4
4,003,165 - -0.1
4,003,165 - -0.2
4,003,174 + -0.2
4,003,200 - +0.2
4,003,207 + +0.0
4,003,233 - -0.4
4,003,235 + -2.1
4,003,241 - -0.7
4,003,243 - +0.0
4,003,243 - -0.4
4,003,253 - -0.1
4,003,265 + CCNA_03838 0.11 +0.2
4,003,273 - CCNA_03838 0.11 -0.3
4,003,372 + CCNA_03838 0.21 -0.8
4,003,372 + CCNA_03838 0.21 +0.1
4,003,372 + CCNA_03838 0.21 -0.1
4,003,373 + CCNA_03838 0.21 -0.3
4,003,380 - CCNA_03838 0.22 -0.1
4,003,380 - CCNA_03838 0.22 -0.1
4,003,380 - CCNA_03838 0.22 -0.3
4,003,381 - CCNA_03838 0.22 +0.5
4,003,428 + CCNA_03838 0.27 +1.2
4,003,436 - CCNA_03838 0.28 -0.1
4,003,467 - CCNA_03838 0.31 -1.0
4,003,496 - CCNA_03838 0.34 -0.0
4,003,501 - CCNA_03838 0.34 +1.6
4,003,513 - CCNA_03838 0.36 -0.1
4,003,513 - CCNA_03838 0.36 +1.0
4,003,513 - CCNA_03838 0.36 +0.5
4,003,547 + CCNA_03838 0.39 -0.3
4,003,693 + CCNA_03838 0.54 +0.7
4,003,716 - CCNA_03838 0.56 -0.5
4,003,731 + CCNA_03838 0.58 -0.6
4,003,731 + CCNA_03838 0.58 -0.5
4,003,736 + CCNA_03838 0.58 -0.4
4,003,736 + CCNA_03838 0.58 +0.1
4,003,751 + CCNA_03838 0.60 +0.3
4,003,778 + CCNA_03838 0.63 +0.8
4,003,780 - CCNA_03838 0.63 -0.4
4,003,801 - CCNA_03838 0.65 -1.5
4,003,808 + CCNA_03838 0.66 +0.0
4,003,808 + CCNA_03838 0.66 +0.9
4,003,819 + CCNA_03838 0.67 +0.0
4,003,874 + CCNA_03838 0.72 +0.6
4,003,874 + CCNA_03838 0.72 +0.1
4,003,874 + CCNA_03838 0.72 -0.8
4,003,882 - CCNA_03838 0.73 -1.0
4,003,882 - CCNA_03838 0.73 +1.2
4,003,882 - CCNA_03838 0.73 +1.3
4,003,882 - CCNA_03838 0.73 +0.5
4,003,897 - CCNA_03838 0.75 -0.4
4,003,911 + CCNA_03838 0.76 +0.8
4,003,911 + CCNA_03838 0.76 +0.2
4,003,916 + CCNA_03838 0.76 +0.1
4,003,924 - CCNA_03838 0.77 -1.0
4,003,936 - CCNA_03838 0.79 +0.4
4,003,995 - CCNA_03838 0.84 -0.2
4,004,006 + CCNA_03838 0.86 +0.3
4,004,006 + CCNA_03838 0.86 -0.1
4,004,006 + CCNA_03838 0.86 -0.0
4,004,006 + CCNA_03838 0.86 +0.3
4,004,006 + CCNA_03838 0.86 +0.1
4,004,014 - CCNA_03838 0.86 -0.6
4,004,014 - CCNA_03838 0.86 -0.1
4,004,014 - CCNA_03838 0.86 +0.2
4,004,014 - CCNA_03838 0.86 -0.2
4,004,042 - CCNA_03838 0.89 +0.0
4,004,046 + CCNA_03838 0.90 -0.5
4,004,054 - -0.7
4,004,064 - -0.7

Or see this region's nucleotide sequence