Experiment: PYE with CHIR-090 40 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03753 and CCNA_03754 overlap by 20 nucleotides CCNA_03754 and CCNA_03755 are separated by 119 nucleotides CCNA_03755 and CCNA_03756 are separated by 62 nucleotides
CCNA_03753: CCNA_03753 - iron-sulfur cluster-binding protein, at 3,922,579 to 3,923,709
_03753
CCNA_03754: CCNA_03754 - FtsZ-binding protein FzlA, at 3,923,690 to 3,924,376
_03754
CCNA_03755: CCNA_03755 - bifunctional D-glycero-D-manno-heptose-7-phosphate 1-kinase/D-glycero-D-manno-heptose-1-phosphate adenylyltransferase, at 3,924,496 to 3,925,947
_03755
CCNA_03756: CCNA_03756 - cation efflux family transporter, at 3,926,010 to 3,926,939
_03756
Position (kb)
3924
3925
3926 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3923.517 kb on + strand, within CCNA_03753 at 3923.517 kb on + strand, within CCNA_03753 at 3923.522 kb on + strand, within CCNA_03753 at 3923.525 kb on - strand, within CCNA_03753 at 3923.530 kb on - strand, within CCNA_03753 at 3923.558 kb on + strand, within CCNA_03753 at 3923.576 kb on + strand, within CCNA_03753 at 3923.597 kb on - strand at 3923.608 kb on + strand at 3924.492 kb on + strand at 3924.537 kb on - strand at 3924.582 kb on - strand at 3924.582 kb on - strand at 3924.585 kb on + strand at 3924.590 kb on + strand at 3924.592 kb on - strand at 3924.631 kb on - strand at 3924.650 kb on + strand, within CCNA_03755 at 3924.650 kb on + strand, within CCNA_03755 at 3924.658 kb on - strand, within CCNA_03755 at 3924.658 kb on - strand, within CCNA_03755 at 3924.715 kb on + strand, within CCNA_03755 at 3924.741 kb on - strand, within CCNA_03755 at 3924.741 kb on - strand, within CCNA_03755 at 3924.741 kb on - strand, within CCNA_03755 at 3924.824 kb on + strand, within CCNA_03755 at 3924.830 kb on + strand, within CCNA_03755 at 3924.832 kb on - strand, within CCNA_03755 at 3924.832 kb on - strand, within CCNA_03755 at 3924.832 kb on - strand, within CCNA_03755 at 3924.838 kb on - strand, within CCNA_03755 at 3924.838 kb on - strand, within CCNA_03755 at 3924.867 kb on + strand, within CCNA_03755 at 3924.867 kb on + strand, within CCNA_03755 at 3924.875 kb on - strand, within CCNA_03755 at 3924.875 kb on - strand, within CCNA_03755 at 3924.896 kb on + strand, within CCNA_03755 at 3924.916 kb on + strand, within CCNA_03755 at 3924.916 kb on + strand, within CCNA_03755 at 3924.936 kb on - strand, within CCNA_03755 at 3924.981 kb on - strand, within CCNA_03755 at 3925.041 kb on + strand, within CCNA_03755 at 3925.084 kb on - strand, within CCNA_03755 at 3925.110 kb on + strand, within CCNA_03755 at 3925.111 kb on + strand, within CCNA_03755 at 3925.210 kb on + strand, within CCNA_03755 at 3925.218 kb on - strand, within CCNA_03755 at 3925.218 kb on - strand, within CCNA_03755 at 3925.234 kb on + strand, within CCNA_03755 at 3925.242 kb on - strand, within CCNA_03755 at 3925.319 kb on + strand, within CCNA_03755 at 3925.354 kb on + strand, within CCNA_03755 at 3925.367 kb on - strand, within CCNA_03755 at 3925.500 kb on + strand, within CCNA_03755 at 3925.518 kb on - strand, within CCNA_03755 at 3925.614 kb on - strand, within CCNA_03755 at 3925.622 kb on + strand, within CCNA_03755 at 3925.630 kb on - strand, within CCNA_03755 at 3925.645 kb on - strand, within CCNA_03755 at 3925.663 kb on - strand, within CCNA_03755 at 3925.690 kb on - strand, within CCNA_03755 at 3925.711 kb on - strand, within CCNA_03755 at 3925.816 kb on - strand at 3925.832 kb on - strand at 3925.843 kb on - strand at 3925.921 kb on + strand at 3925.921 kb on + strand at 3925.929 kb on - strand at 3925.936 kb on + strand at 3925.942 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL remove 3,923,517 + CCNA_03753 0.83 +0.6 3,923,517 + CCNA_03753 0.83 -1.0 3,923,522 + CCNA_03753 0.83 -0.0 3,923,525 - CCNA_03753 0.84 +0.5 3,923,530 - CCNA_03753 0.84 +0.3 3,923,558 + CCNA_03753 0.87 -0.6 3,923,576 + CCNA_03753 0.88 -0.5 3,923,597 - +0.2 3,923,608 + -0.4 3,924,492 + -0.7 3,924,537 - +1.3 3,924,582 - -0.4 3,924,582 - +0.0 3,924,585 + +0.0 3,924,590 + +0.6 3,924,592 - +0.3 3,924,631 - -1.3 3,924,650 + CCNA_03755 0.11 -1.8 3,924,650 + CCNA_03755 0.11 -1.3 3,924,658 - CCNA_03755 0.11 -2.1 3,924,658 - CCNA_03755 0.11 -2.6 3,924,715 + CCNA_03755 0.15 -0.2 3,924,741 - CCNA_03755 0.17 +1.6 3,924,741 - CCNA_03755 0.17 -0.4 3,924,741 - CCNA_03755 0.17 -0.5 3,924,824 + CCNA_03755 0.23 -0.2 3,924,830 + CCNA_03755 0.23 +0.3 3,924,832 - CCNA_03755 0.23 -0.8 3,924,832 - CCNA_03755 0.23 -2.0 3,924,832 - CCNA_03755 0.23 -0.5 3,924,838 - CCNA_03755 0.24 -0.7 3,924,838 - CCNA_03755 0.24 +0.0 3,924,867 + CCNA_03755 0.26 -0.5 3,924,867 + CCNA_03755 0.26 -0.5 3,924,875 - CCNA_03755 0.26 -1.3 3,924,875 - CCNA_03755 0.26 +0.2 3,924,896 + CCNA_03755 0.28 -1.3 3,924,916 + CCNA_03755 0.29 -0.7 3,924,916 + CCNA_03755 0.29 +0.6 3,924,936 - CCNA_03755 0.30 +0.0 3,924,981 - CCNA_03755 0.33 +0.3 3,925,041 + CCNA_03755 0.38 -0.2 3,925,084 - CCNA_03755 0.40 +1.3 3,925,110 + CCNA_03755 0.42 -1.1 3,925,111 + CCNA_03755 0.42 +0.6 3,925,210 + CCNA_03755 0.49 -1.3 3,925,218 - CCNA_03755 0.50 +0.5 3,925,218 - CCNA_03755 0.50 -0.7 3,925,234 + CCNA_03755 0.51 -1.5 3,925,242 - CCNA_03755 0.51 -0.4 3,925,319 + CCNA_03755 0.57 +1.3 3,925,354 + CCNA_03755 0.59 +0.3 3,925,367 - CCNA_03755 0.60 -0.2 3,925,500 + CCNA_03755 0.69 -0.8 3,925,518 - CCNA_03755 0.70 +0.6 3,925,614 - CCNA_03755 0.77 -1.5 3,925,622 + CCNA_03755 0.78 -0.5 3,925,630 - CCNA_03755 0.78 -3.0 3,925,645 - CCNA_03755 0.79 -1.0 3,925,663 - CCNA_03755 0.80 -0.2 3,925,690 - CCNA_03755 0.82 -0.4 3,925,711 - CCNA_03755 0.84 +1.6 3,925,816 - +0.0 3,925,832 - -0.5 3,925,843 - -2.7 3,925,921 + +0.0 3,925,921 + -1.6 3,925,929 - +0.0 3,925,936 + +0.6 3,925,942 + +0.5
Or see this region's nucleotide sequence