Experiment: PYE with CHIR-090 40 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03752 and CCNA_03753 overlap by 4 nucleotides CCNA_03753 and CCNA_03754 overlap by 20 nucleotides CCNA_03754 and CCNA_03755 are separated by 119 nucleotides
CCNA_03752: CCNA_03752 - UTP-glucose-1-phosphate uridylyltransferase, at 3,921,686 to 3,922,582
_03752
CCNA_03753: CCNA_03753 - iron-sulfur cluster-binding protein, at 3,922,579 to 3,923,709
_03753
CCNA_03754: CCNA_03754 - FtsZ-binding protein FzlA, at 3,923,690 to 3,924,376
_03754
CCNA_03755: CCNA_03755 - bifunctional D-glycero-D-manno-heptose-7-phosphate 1-kinase/D-glycero-D-manno-heptose-1-phosphate adenylyltransferase, at 3,924,496 to 3,925,947
_03755
Position (kb)
3922
3923
3924 Strain fitness (log2 ratio)
-2
-1
0
1 at 3921.582 kb on - strand at 3921.584 kb on + strand at 3921.592 kb on - strand at 3921.614 kb on + strand at 3921.614 kb on + strand at 3921.615 kb on + strand at 3921.615 kb on + strand at 3921.647 kb on - strand at 3921.650 kb on + strand at 3921.685 kb on - strand at 3922.558 kb on + strand at 3922.576 kb on + strand at 3922.577 kb on + strand at 3922.577 kb on + strand at 3922.585 kb on - strand at 3922.585 kb on - strand at 3922.621 kb on + strand at 3922.629 kb on - strand at 3922.669 kb on - strand at 3922.671 kb on - strand at 3922.723 kb on + strand, within CCNA_03753 at 3922.723 kb on + strand, within CCNA_03753 at 3922.837 kb on + strand, within CCNA_03753 at 3922.845 kb on - strand, within CCNA_03753 at 3922.845 kb on - strand, within CCNA_03753 at 3922.878 kb on - strand, within CCNA_03753 at 3922.938 kb on + strand, within CCNA_03753 at 3922.958 kb on + strand, within CCNA_03753 at 3922.999 kb on + strand, within CCNA_03753 at 3923.126 kb on - strand, within CCNA_03753 at 3923.145 kb on + strand, within CCNA_03753 at 3923.145 kb on + strand, within CCNA_03753 at 3923.145 kb on + strand, within CCNA_03753 at 3923.145 kb on + strand, within CCNA_03753 at 3923.145 kb on + strand, within CCNA_03753 at 3923.145 kb on + strand, within CCNA_03753 at 3923.146 kb on + strand, within CCNA_03753 at 3923.153 kb on - strand, within CCNA_03753 at 3923.153 kb on - strand, within CCNA_03753 at 3923.153 kb on - strand, within CCNA_03753 at 3923.153 kb on - strand, within CCNA_03753 at 3923.153 kb on - strand, within CCNA_03753 at 3923.153 kb on - strand, within CCNA_03753 at 3923.155 kb on + strand, within CCNA_03753 at 3923.155 kb on + strand, within CCNA_03753 at 3923.163 kb on - strand, within CCNA_03753 at 3923.183 kb on + strand, within CCNA_03753 at 3923.186 kb on - strand, within CCNA_03753 at 3923.192 kb on - strand, within CCNA_03753 at 3923.227 kb on + strand, within CCNA_03753 at 3923.235 kb on - strand, within CCNA_03753 at 3923.254 kb on - strand, within CCNA_03753 at 3923.286 kb on + strand, within CCNA_03753 at 3923.313 kb on + strand, within CCNA_03753 at 3923.314 kb on + strand, within CCNA_03753 at 3923.318 kb on - strand, within CCNA_03753 at 3923.331 kb on + strand, within CCNA_03753 at 3923.371 kb on - strand, within CCNA_03753 at 3923.374 kb on + strand, within CCNA_03753 at 3923.413 kb on - strand, within CCNA_03753 at 3923.468 kb on - strand, within CCNA_03753 at 3923.517 kb on + strand, within CCNA_03753 at 3923.517 kb on + strand, within CCNA_03753 at 3923.522 kb on + strand, within CCNA_03753 at 3923.525 kb on - strand, within CCNA_03753 at 3923.530 kb on - strand, within CCNA_03753 at 3923.558 kb on + strand, within CCNA_03753 at 3923.576 kb on + strand, within CCNA_03753 at 3923.597 kb on - strand at 3923.608 kb on + strand at 3924.492 kb on + strand at 3924.537 kb on - strand at 3924.582 kb on - strand at 3924.582 kb on - strand at 3924.585 kb on + strand at 3924.590 kb on + strand at 3924.592 kb on - strand at 3924.631 kb on - strand at 3924.650 kb on + strand, within CCNA_03755 at 3924.650 kb on + strand, within CCNA_03755 at 3924.658 kb on - strand, within CCNA_03755 at 3924.658 kb on - strand, within CCNA_03755
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL remove 3,921,582 - -0.5 3,921,584 + +0.6 3,921,592 - +0.3 3,921,614 + -1.0 3,921,614 + +0.2 3,921,615 + -0.1 3,921,615 + +0.7 3,921,647 - +0.5 3,921,650 + -0.2 3,921,685 - -0.3 3,922,558 + +0.4 3,922,576 + +0.1 3,922,577 + -0.6 3,922,577 + +0.2 3,922,585 - +0.1 3,922,585 - +0.0 3,922,621 + +0.2 3,922,629 - +0.2 3,922,669 - +1.6 3,922,671 - -0.1 3,922,723 + CCNA_03753 0.13 -0.2 3,922,723 + CCNA_03753 0.13 +0.2 3,922,837 + CCNA_03753 0.23 -0.2 3,922,845 - CCNA_03753 0.24 +0.6 3,922,845 - CCNA_03753 0.24 +0.0 3,922,878 - CCNA_03753 0.26 +1.0 3,922,938 + CCNA_03753 0.32 +0.7 3,922,958 + CCNA_03753 0.34 +0.1 3,922,999 + CCNA_03753 0.37 +0.6 3,923,126 - CCNA_03753 0.48 -0.0 3,923,145 + CCNA_03753 0.50 -0.2 3,923,145 + CCNA_03753 0.50 -0.4 3,923,145 + CCNA_03753 0.50 -1.5 3,923,145 + CCNA_03753 0.50 -0.3 3,923,145 + CCNA_03753 0.50 -0.9 3,923,145 + CCNA_03753 0.50 +0.5 3,923,146 + CCNA_03753 0.50 -0.1 3,923,153 - CCNA_03753 0.51 +0.3 3,923,153 - CCNA_03753 0.51 -0.6 3,923,153 - CCNA_03753 0.51 +0.1 3,923,153 - CCNA_03753 0.51 +0.0 3,923,153 - CCNA_03753 0.51 -0.1 3,923,153 - CCNA_03753 0.51 +0.2 3,923,155 + CCNA_03753 0.51 +0.4 3,923,155 + CCNA_03753 0.51 +0.5 3,923,163 - CCNA_03753 0.52 -0.3 3,923,183 + CCNA_03753 0.53 -0.0 3,923,186 - CCNA_03753 0.54 +0.6 3,923,192 - CCNA_03753 0.54 +0.8 3,923,227 + CCNA_03753 0.57 -0.5 3,923,235 - CCNA_03753 0.58 -0.1 3,923,254 - CCNA_03753 0.60 +0.4 3,923,286 + CCNA_03753 0.63 -0.5 3,923,313 + CCNA_03753 0.65 +0.1 3,923,314 + CCNA_03753 0.65 +0.5 3,923,318 - CCNA_03753 0.65 +0.3 3,923,331 + CCNA_03753 0.66 -0.9 3,923,371 - CCNA_03753 0.70 -0.4 3,923,374 + CCNA_03753 0.70 -0.2 3,923,413 - CCNA_03753 0.74 -0.5 3,923,468 - CCNA_03753 0.79 +0.3 3,923,517 + CCNA_03753 0.83 +0.6 3,923,517 + CCNA_03753 0.83 -1.0 3,923,522 + CCNA_03753 0.83 -0.0 3,923,525 - CCNA_03753 0.84 +0.5 3,923,530 - CCNA_03753 0.84 +0.3 3,923,558 + CCNA_03753 0.87 -0.6 3,923,576 + CCNA_03753 0.88 -0.5 3,923,597 - +0.2 3,923,608 + -0.4 3,924,492 + -0.7 3,924,537 - +1.3 3,924,582 - -0.4 3,924,582 - +0.0 3,924,585 + +0.0 3,924,590 + +0.6 3,924,592 - +0.3 3,924,631 - -1.3 3,924,650 + CCNA_03755 0.11 -1.8 3,924,650 + CCNA_03755 0.11 -1.3 3,924,658 - CCNA_03755 0.11 -2.1 3,924,658 - CCNA_03755 0.11 -2.6
Or see this region's nucleotide sequence