Experiment: PYE with CHIR-090 40 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03584 and CCNA_03585 are separated by 79 nucleotides CCNA_03585 and CCNA_03586 overlap by 4 nucleotides CCNA_03586 and CCNA_03587 are separated by 59 nucleotides CCNA_03587 and CCNA_03588 are separated by 89 nucleotides
CCNA_03584: CCNA_03584 - histidine phosphotransferase ChpT, at 3,739,999 to 3,740,676
_03584
CCNA_03585: CCNA_03585 - chemotaxis receiver domain protein CheYIV, at 3,740,756 to 3,741,133
_03585
CCNA_03586: CCNA_03586 - chemotaxis protein methyltransferase, at 3,741,130 to 3,741,960
_03586
CCNA_03587: CCNA_03587 - entericidin B-like protein, at 3,742,020 to 3,742,163
_03587
CCNA_03588: CCNA_03588 - two-component sensor histidine kinase PhyK, at 3,742,253 to 3,743,956
_03588
Position (kb)
3741
3742 Strain fitness (log2 ratio)
-2
-1
0
1 at 3740.721 kb on + strand at 3740.721 kb on + strand at 3740.728 kb on - strand at 3740.753 kb on + strand at 3740.761 kb on - strand at 3740.761 kb on - strand at 3740.761 kb on - strand at 3740.768 kb on + strand at 3740.775 kb on + strand at 3740.776 kb on - strand at 3740.776 kb on - strand at 3740.840 kb on + strand, within CCNA_03585 at 3740.848 kb on - strand, within CCNA_03585 at 3740.907 kb on + strand, within CCNA_03585 at 3740.912 kb on + strand, within CCNA_03585 at 3740.944 kb on - strand, within CCNA_03585 at 3740.999 kb on + strand, within CCNA_03585 at 3741.007 kb on - strand, within CCNA_03585 at 3741.007 kb on - strand, within CCNA_03585 at 3741.007 kb on - strand, within CCNA_03585 at 3741.014 kb on + strand, within CCNA_03585 at 3741.014 kb on + strand, within CCNA_03585 at 3741.014 kb on + strand, within CCNA_03585 at 3741.014 kb on + strand, within CCNA_03585 at 3741.014 kb on + strand, within CCNA_03585 at 3741.014 kb on + strand, within CCNA_03585 at 3741.014 kb on + strand, within CCNA_03585 at 3741.014 kb on + strand, within CCNA_03585 at 3741.014 kb on + strand, within CCNA_03585 at 3741.014 kb on + strand, within CCNA_03585 at 3741.022 kb on - strand, within CCNA_03585 at 3741.022 kb on - strand, within CCNA_03585 at 3741.022 kb on - strand, within CCNA_03585 at 3741.022 kb on - strand, within CCNA_03585 at 3741.022 kb on - strand, within CCNA_03585 at 3741.022 kb on - strand, within CCNA_03585 at 3741.022 kb on - strand, within CCNA_03585 at 3741.022 kb on - strand, within CCNA_03585 at 3741.022 kb on - strand, within CCNA_03585 at 3741.024 kb on + strand, within CCNA_03585 at 3741.024 kb on + strand, within CCNA_03585 at 3741.032 kb on - strand, within CCNA_03585 at 3741.032 kb on - strand, within CCNA_03585 at 3741.070 kb on - strand, within CCNA_03585 at 3741.079 kb on - strand, within CCNA_03585 at 3741.081 kb on - strand, within CCNA_03585 at 3741.127 kb on + strand at 3741.150 kb on - strand at 3741.151 kb on - strand at 3741.160 kb on + strand at 3741.168 kb on - strand at 3741.199 kb on + strand at 3741.258 kb on - strand, within CCNA_03586 at 3741.259 kb on - strand, within CCNA_03586 at 3741.273 kb on + strand, within CCNA_03586 at 3741.281 kb on - strand, within CCNA_03586 at 3741.309 kb on + strand, within CCNA_03586 at 3741.309 kb on + strand, within CCNA_03586 at 3741.317 kb on - strand, within CCNA_03586 at 3741.374 kb on + strand, within CCNA_03586 at 3741.508 kb on + strand, within CCNA_03586 at 3741.528 kb on + strand, within CCNA_03586 at 3741.541 kb on + strand, within CCNA_03586 at 3741.744 kb on + strand, within CCNA_03586 at 3741.759 kb on + strand, within CCNA_03586 at 3741.793 kb on + strand, within CCNA_03586 at 3741.897 kb on - strand at 3741.934 kb on + strand at 3741.987 kb on + strand at 3741.987 kb on + strand at 3742.005 kb on + strand at 3742.011 kb on + strand at 3742.013 kb on - strand at 3742.019 kb on - strand at 3742.107 kb on - strand, within CCNA_03587 at 3742.179 kb on - strand at 3742.210 kb on - strand at 3742.218 kb on - strand at 3742.245 kb on + strand at 3742.263 kb on - strand at 3742.322 kb on + strand at 3742.354 kb on + strand at 3742.362 kb on - strand at 3742.372 kb on + strand at 3742.386 kb on + strand at 3742.417 kb on - strand at 3742.417 kb on - strand at 3742.417 kb on - strand at 3742.474 kb on + strand, within CCNA_03588 at 3742.546 kb on + strand, within CCNA_03588 at 3742.554 kb on - strand, within CCNA_03588 at 3742.581 kb on + strand, within CCNA_03588 at 3742.581 kb on + strand, within CCNA_03588 at 3742.593 kb on + strand, within CCNA_03588 at 3742.685 kb on + strand, within CCNA_03588 at 3742.706 kb on - strand, within CCNA_03588 at 3742.713 kb on + strand, within CCNA_03588 at 3742.721 kb on - strand, within CCNA_03588 at 3742.726 kb on - strand, within CCNA_03588 at 3742.727 kb on - strand, within CCNA_03588 at 3742.795 kb on + strand, within CCNA_03588 at 3742.823 kb on - strand, within CCNA_03588 at 3742.844 kb on + strand, within CCNA_03588
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL remove 3,740,721 + -0.0 3,740,721 + +0.5 3,740,728 - -0.2 3,740,753 + -0.5 3,740,761 - -0.6 3,740,761 - -2.4 3,740,761 - -0.7 3,740,768 + +0.5 3,740,775 + +0.2 3,740,776 - +0.1 3,740,776 - +0.5 3,740,840 + CCNA_03585 0.22 -0.3 3,740,848 - CCNA_03585 0.24 +0.2 3,740,907 + CCNA_03585 0.40 +0.8 3,740,912 + CCNA_03585 0.41 -0.2 3,740,944 - CCNA_03585 0.50 -0.3 3,740,999 + CCNA_03585 0.64 +0.4 3,741,007 - CCNA_03585 0.66 -1.4 3,741,007 - CCNA_03585 0.66 -0.1 3,741,007 - CCNA_03585 0.66 -0.1 3,741,014 + CCNA_03585 0.68 -0.2 3,741,014 + CCNA_03585 0.68 -0.7 3,741,014 + CCNA_03585 0.68 +0.5 3,741,014 + CCNA_03585 0.68 -0.3 3,741,014 + CCNA_03585 0.68 +0.4 3,741,014 + CCNA_03585 0.68 +0.4 3,741,014 + CCNA_03585 0.68 -0.4 3,741,014 + CCNA_03585 0.68 -0.1 3,741,014 + CCNA_03585 0.68 +0.1 3,741,014 + CCNA_03585 0.68 +0.3 3,741,022 - CCNA_03585 0.70 -0.8 3,741,022 - CCNA_03585 0.70 +0.0 3,741,022 - CCNA_03585 0.70 -0.4 3,741,022 - CCNA_03585 0.70 -1.4 3,741,022 - CCNA_03585 0.70 +0.8 3,741,022 - CCNA_03585 0.70 -0.9 3,741,022 - CCNA_03585 0.70 -0.5 3,741,022 - CCNA_03585 0.70 -0.9 3,741,022 - CCNA_03585 0.70 +0.8 3,741,024 + CCNA_03585 0.71 -0.1 3,741,024 + CCNA_03585 0.71 -1.3 3,741,032 - CCNA_03585 0.73 -0.6 3,741,032 - CCNA_03585 0.73 -0.9 3,741,070 - CCNA_03585 0.83 -0.4 3,741,079 - CCNA_03585 0.85 -0.9 3,741,081 - CCNA_03585 0.86 -0.1 3,741,127 + +0.0 3,741,150 - -1.9 3,741,151 - +0.3 3,741,160 + -0.2 3,741,168 - -0.5 3,741,199 + +0.3 3,741,258 - CCNA_03586 0.15 +0.2 3,741,259 - CCNA_03586 0.16 -1.9 3,741,273 + CCNA_03586 0.17 -0.0 3,741,281 - CCNA_03586 0.18 +0.4 3,741,309 + CCNA_03586 0.22 -1.5 3,741,309 + CCNA_03586 0.22 -0.4 3,741,317 - CCNA_03586 0.23 +0.8 3,741,374 + CCNA_03586 0.29 -0.2 3,741,508 + CCNA_03586 0.45 +1.4 3,741,528 + CCNA_03586 0.48 +0.5 3,741,541 + CCNA_03586 0.49 -0.0 3,741,744 + CCNA_03586 0.74 -0.5 3,741,759 + CCNA_03586 0.76 +0.3 3,741,793 + CCNA_03586 0.80 +0.7 3,741,897 - -0.3 3,741,934 + +0.1 3,741,987 + +0.1 3,741,987 + +0.4 3,742,005 + +0.5 3,742,011 + -1.6 3,742,013 - +0.1 3,742,019 - +1.0 3,742,107 - CCNA_03587 0.60 +0.3 3,742,179 - +0.4 3,742,210 - +0.7 3,742,218 - -0.1 3,742,245 + +0.4 3,742,263 - -0.0 3,742,322 + -0.2 3,742,354 + -0.4 3,742,362 - -0.0 3,742,372 + -0.1 3,742,386 + -0.3 3,742,417 - -0.2 3,742,417 - -0.2 3,742,417 - +1.4 3,742,474 + CCNA_03588 0.13 -0.5 3,742,546 + CCNA_03588 0.17 -1.1 3,742,554 - CCNA_03588 0.18 -1.2 3,742,581 + CCNA_03588 0.19 +0.1 3,742,581 + CCNA_03588 0.19 +0.1 3,742,593 + CCNA_03588 0.20 -0.4 3,742,685 + CCNA_03588 0.25 -0.3 3,742,706 - CCNA_03588 0.27 +0.4 3,742,713 + CCNA_03588 0.27 -1.1 3,742,721 - CCNA_03588 0.27 -0.1 3,742,726 - CCNA_03588 0.28 -0.2 3,742,727 - CCNA_03588 0.28 +0.6 3,742,795 + CCNA_03588 0.32 -0.9 3,742,823 - CCNA_03588 0.33 +0.7 3,742,844 + CCNA_03588 0.35 +0.2
Or see this region's nucleotide sequence