Experiment: PYE with CHIR-090 40 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03369 and CCNA_03370 are separated by 164 nucleotides CCNA_03370 and CCNA_03371 overlap by 4 nucleotides CCNA_03371 and CCNA_03372 are separated by 152 nucleotides CCNA_03372 and CCNA_03373 are separated by 131 nucleotides
CCNA_03369: CCNA_03369 - hypothetical protein, at 3,545,467 to 3,546,042
_03369
CCNA_03370: CCNA_03370 - acetyltransferase, at 3,546,207 to 3,546,728
_03370
CCNA_03371: CCNA_03371 - bacterioferritin, at 3,546,725 to 3,547,204
_03371
CCNA_03372: CCNA_03372 - bacterioferritin-associated ferredoxin, at 3,547,357 to 3,547,542
_03372
CCNA_03373: CCNA_03373 - thiamin-phosphate pyrophosphorylase, at 3,547,674 to 3,548,318
_03373
Position (kb)
3546
3547
3548 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3545.755 kb on + strand, within CCNA_03369 at 3545.760 kb on + strand, within CCNA_03369 at 3545.763 kb on - strand, within CCNA_03369 at 3545.768 kb on + strand, within CCNA_03369 at 3545.768 kb on + strand, within CCNA_03369 at 3545.768 kb on - strand, within CCNA_03369 at 3545.769 kb on - strand, within CCNA_03369 at 3545.820 kb on + strand, within CCNA_03369 at 3545.820 kb on + strand, within CCNA_03369 at 3545.860 kb on - strand, within CCNA_03369 at 3545.860 kb on - strand, within CCNA_03369 at 3545.923 kb on + strand, within CCNA_03369 at 3545.923 kb on + strand, within CCNA_03369 at 3545.923 kb on + strand, within CCNA_03369 at 3545.923 kb on + strand, within CCNA_03369 at 3545.923 kb on + strand, within CCNA_03369 at 3545.923 kb on + strand, within CCNA_03369 at 3545.923 kb on + strand, within CCNA_03369 at 3545.931 kb on - strand, within CCNA_03369 at 3545.931 kb on - strand, within CCNA_03369 at 3545.931 kb on - strand, within CCNA_03369 at 3545.931 kb on - strand, within CCNA_03369 at 3546.066 kb on + strand at 3546.074 kb on - strand at 3546.076 kb on + strand at 3546.084 kb on - strand at 3546.084 kb on - strand at 3546.091 kb on + strand at 3546.093 kb on - strand at 3546.100 kb on - strand at 3546.102 kb on + strand at 3546.112 kb on + strand at 3546.112 kb on + strand at 3546.119 kb on - strand at 3546.120 kb on - strand at 3546.144 kb on + strand at 3546.159 kb on - strand at 3546.169 kb on + strand at 3546.169 kb on + strand at 3546.172 kb on - strand at 3546.190 kb on - strand at 3546.296 kb on + strand, within CCNA_03370 at 3546.320 kb on + strand, within CCNA_03370 at 3546.327 kb on + strand, within CCNA_03370 at 3546.430 kb on - strand, within CCNA_03370 at 3546.432 kb on + strand, within CCNA_03370 at 3546.432 kb on + strand, within CCNA_03370 at 3546.448 kb on + strand, within CCNA_03370 at 3546.466 kb on - strand, within CCNA_03370 at 3546.501 kb on + strand, within CCNA_03370 at 3546.501 kb on + strand, within CCNA_03370 at 3546.501 kb on + strand, within CCNA_03370 at 3546.509 kb on - strand, within CCNA_03370 at 3546.509 kb on - strand, within CCNA_03370 at 3546.509 kb on - strand, within CCNA_03370 at 3546.509 kb on - strand, within CCNA_03370 at 3546.509 kb on - strand, within CCNA_03370 at 3546.509 kb on - strand, within CCNA_03370 at 3546.514 kb on - strand, within CCNA_03370 at 3546.514 kb on - strand, within CCNA_03370 at 3546.543 kb on - strand, within CCNA_03370 at 3546.621 kb on - strand, within CCNA_03370 at 3546.632 kb on + strand, within CCNA_03370 at 3546.636 kb on - strand, within CCNA_03370 at 3546.664 kb on - strand, within CCNA_03370 at 3546.675 kb on + strand, within CCNA_03370 at 3546.731 kb on - strand at 3546.758 kb on + strand at 3546.772 kb on - strand at 3546.777 kb on + strand, within CCNA_03371 at 3546.809 kb on + strand, within CCNA_03371 at 3546.809 kb on + strand, within CCNA_03371 at 3546.825 kb on + strand, within CCNA_03371 at 3546.876 kb on + strand, within CCNA_03371 at 3546.894 kb on - strand, within CCNA_03371 at 3546.894 kb on - strand, within CCNA_03371 at 3546.907 kb on - strand, within CCNA_03371 at 3546.912 kb on + strand, within CCNA_03371 at 3546.912 kb on + strand, within CCNA_03371 at 3546.995 kb on - strand, within CCNA_03371 at 3547.008 kb on + strand, within CCNA_03371 at 3547.016 kb on - strand, within CCNA_03371 at 3547.031 kb on - strand, within CCNA_03371 at 3547.072 kb on + strand, within CCNA_03371 at 3547.107 kb on + strand, within CCNA_03371 at 3547.167 kb on + strand at 3547.167 kb on + strand at 3547.167 kb on + strand at 3547.167 kb on + strand at 3547.175 kb on - strand at 3547.195 kb on - strand at 3547.201 kb on + strand at 3547.272 kb on + strand at 3547.380 kb on - strand, within CCNA_03372 at 3547.620 kb on + strand at 3547.626 kb on - strand at 3547.648 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL remove 3,545,755 + CCNA_03369 0.50 -0.6 3,545,760 + CCNA_03369 0.51 +1.4 3,545,763 - CCNA_03369 0.51 +0.4 3,545,768 + CCNA_03369 0.52 +0.4 3,545,768 + CCNA_03369 0.52 +0.2 3,545,768 - CCNA_03369 0.52 -0.0 3,545,769 - CCNA_03369 0.52 -1.0 3,545,820 + CCNA_03369 0.61 -1.3 3,545,820 + CCNA_03369 0.61 -0.3 3,545,860 - CCNA_03369 0.68 +1.2 3,545,860 - CCNA_03369 0.68 +0.2 3,545,923 + CCNA_03369 0.79 -0.3 3,545,923 + CCNA_03369 0.79 -0.1 3,545,923 + CCNA_03369 0.79 -0.2 3,545,923 + CCNA_03369 0.79 -1.3 3,545,923 + CCNA_03369 0.79 +0.1 3,545,923 + CCNA_03369 0.79 -0.3 3,545,923 + CCNA_03369 0.79 +0.1 3,545,931 - CCNA_03369 0.81 +0.5 3,545,931 - CCNA_03369 0.81 +0.4 3,545,931 - CCNA_03369 0.81 +0.5 3,545,931 - CCNA_03369 0.81 -0.5 3,546,066 + -0.2 3,546,074 - +0.1 3,546,076 + +0.4 3,546,084 - +0.6 3,546,084 - -0.3 3,546,091 + -1.6 3,546,093 - +0.4 3,546,100 - -1.6 3,546,102 + -0.2 3,546,112 + -0.2 3,546,112 + -1.1 3,546,119 - -1.3 3,546,120 - -1.3 3,546,144 + -0.6 3,546,159 - -0.2 3,546,169 + +0.3 3,546,169 + +0.4 3,546,172 - +0.8 3,546,190 - -0.5 3,546,296 + CCNA_03370 0.17 -0.3 3,546,320 + CCNA_03370 0.22 +0.9 3,546,327 + CCNA_03370 0.23 -0.4 3,546,430 - CCNA_03370 0.43 +0.1 3,546,432 + CCNA_03370 0.43 +0.2 3,546,432 + CCNA_03370 0.43 +0.3 3,546,448 + CCNA_03370 0.46 -0.8 3,546,466 - CCNA_03370 0.50 +0.4 3,546,501 + CCNA_03370 0.56 +0.0 3,546,501 + CCNA_03370 0.56 +0.9 3,546,501 + CCNA_03370 0.56 -0.8 3,546,509 - CCNA_03370 0.58 +0.5 3,546,509 - CCNA_03370 0.58 -0.3 3,546,509 - CCNA_03370 0.58 +0.2 3,546,509 - CCNA_03370 0.58 +0.5 3,546,509 - CCNA_03370 0.58 +1.0 3,546,509 - CCNA_03370 0.58 +1.7 3,546,514 - CCNA_03370 0.59 +0.5 3,546,514 - CCNA_03370 0.59 +0.6 3,546,543 - CCNA_03370 0.64 +0.7 3,546,621 - CCNA_03370 0.79 +0.1 3,546,632 + CCNA_03370 0.81 +3.1 3,546,636 - CCNA_03370 0.82 +0.2 3,546,664 - CCNA_03370 0.88 -0.2 3,546,675 + CCNA_03370 0.90 -1.2 3,546,731 - -0.0 3,546,758 + -0.0 3,546,772 - +0.3 3,546,777 + CCNA_03371 0.11 -1.5 3,546,809 + CCNA_03371 0.17 -1.0 3,546,809 + CCNA_03371 0.17 -0.8 3,546,825 + CCNA_03371 0.21 +0.0 3,546,876 + CCNA_03371 0.31 -1.8 3,546,894 - CCNA_03371 0.35 -0.0 3,546,894 - CCNA_03371 0.35 +1.1 3,546,907 - CCNA_03371 0.38 +0.3 3,546,912 + CCNA_03371 0.39 -0.4 3,546,912 + CCNA_03371 0.39 -1.9 3,546,995 - CCNA_03371 0.56 -0.7 3,547,008 + CCNA_03371 0.59 -0.4 3,547,016 - CCNA_03371 0.61 +0.7 3,547,031 - CCNA_03371 0.64 +0.1 3,547,072 + CCNA_03371 0.72 -2.1 3,547,107 + CCNA_03371 0.80 -0.8 3,547,167 + +0.2 3,547,167 + -1.6 3,547,167 + -1.2 3,547,167 + -0.1 3,547,175 - +0.4 3,547,195 - +0.0 3,547,201 + -1.4 3,547,272 + -1.7 3,547,380 - CCNA_03372 0.12 +0.1 3,547,620 + -0.4 3,547,626 - +0.6 3,547,648 - +0.2
Or see this region's nucleotide sequence