Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02548

Experiment: PYE with CHIR-090 40 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02546 and CCNA_02547 overlap by 4 nucleotidesCCNA_02547 and CCNA_02548 are separated by 121 nucleotidesCCNA_02548 and CCNA_02549 overlap by 4 nucleotidesCCNA_02549 and CCNA_02550 are separated by 8 nucleotides CCNA_02546: CCNA_02546 - GGDEF/response regulator protein PleD, at 2,694,580 to 2,695,944 _02546 CCNA_02547: CCNA_02547 - response regulator receiver protein DivK, at 2,695,941 to 2,696,318 _02547 CCNA_02548: CCNA_02548 - hypothetical protein, at 2,696,440 to 2,697,087 _02548 CCNA_02549: CCNA_02549 - glucokinase, at 2,697,084 to 2,697,974 _02549 CCNA_02550: CCNA_02550 - DNA polymerase IV-kappa DinB, at 2,697,983 to 2,699,239 _02550 Position (kb) 2696 2697 2698Strain fitness (log2 ratio) -2 -1 0 1 2at 2695.484 kb on - strand, within CCNA_02546at 2695.484 kb on - strand, within CCNA_02546at 2695.484 kb on - strand, within CCNA_02546at 2695.503 kb on - strand, within CCNA_02546at 2695.503 kb on - strand, within CCNA_02546at 2695.527 kb on - strand, within CCNA_02546at 2695.537 kb on + strand, within CCNA_02546at 2695.584 kb on + strand, within CCNA_02546at 2695.593 kb on - strand, within CCNA_02546at 2695.609 kb on + strand, within CCNA_02546at 2695.656 kb on + strand, within CCNA_02546at 2695.685 kb on - strand, within CCNA_02546at 2695.707 kb on - strand, within CCNA_02546at 2695.751 kb on - strand, within CCNA_02546at 2695.755 kb on + strand, within CCNA_02546at 2695.820 kb on + strandat 2695.820 kb on + strandat 2695.820 kb on + strandat 2695.820 kb on + strandat 2695.828 kb on - strandat 2695.828 kb on - strandat 2695.828 kb on - strandat 2695.828 kb on - strandat 2695.833 kb on - strandat 2695.860 kb on + strandat 2695.862 kb on + strandat 2695.874 kb on + strandat 2695.875 kb on - strandat 2695.930 kb on + strandat 2695.930 kb on + strandat 2695.938 kb on - strandat 2695.938 kb on - strandat 2696.318 kb on + strandat 2696.318 kb on + strandat 2696.318 kb on + strandat 2696.318 kb on + strandat 2696.318 kb on + strandat 2696.318 kb on + strandat 2696.326 kb on - strandat 2696.326 kb on - strandat 2696.395 kb on + strandat 2696.400 kb on + strandat 2696.401 kb on - strandat 2696.403 kb on - strandat 2696.403 kb on - strandat 2696.448 kb on + strandat 2696.466 kb on + strandat 2696.471 kb on + strandat 2696.479 kb on - strandat 2696.484 kb on - strandat 2696.491 kb on + strandat 2696.491 kb on + strandat 2696.499 kb on - strandat 2696.518 kb on + strand, within CCNA_02548at 2696.526 kb on - strand, within CCNA_02548at 2696.526 kb on - strand, within CCNA_02548at 2696.529 kb on + strand, within CCNA_02548at 2696.540 kb on + strand, within CCNA_02548at 2696.540 kb on + strand, within CCNA_02548at 2696.540 kb on + strand, within CCNA_02548at 2696.548 kb on - strand, within CCNA_02548at 2696.575 kb on - strand, within CCNA_02548at 2696.575 kb on - strand, within CCNA_02548at 2696.596 kb on - strand, within CCNA_02548at 2696.596 kb on - strand, within CCNA_02548at 2696.598 kb on + strand, within CCNA_02548at 2696.618 kb on - strand, within CCNA_02548at 2696.628 kb on - strand, within CCNA_02548at 2696.692 kb on + strand, within CCNA_02548at 2696.700 kb on - strand, within CCNA_02548at 2696.705 kb on - strand, within CCNA_02548at 2696.758 kb on + strand, within CCNA_02548at 2696.781 kb on - strand, within CCNA_02548at 2696.804 kb on + strand, within CCNA_02548at 2696.819 kb on + strand, within CCNA_02548at 2696.828 kb on + strand, within CCNA_02548at 2696.835 kb on + strand, within CCNA_02548at 2696.836 kb on + strand, within CCNA_02548at 2696.844 kb on - strand, within CCNA_02548at 2696.859 kb on - strand, within CCNA_02548at 2696.859 kb on - strand, within CCNA_02548at 2696.859 kb on - strand, within CCNA_02548at 2696.860 kb on - strand, within CCNA_02548at 2696.871 kb on - strand, within CCNA_02548at 2696.872 kb on + strand, within CCNA_02548at 2696.881 kb on - strand, within CCNA_02548at 2696.888 kb on + strand, within CCNA_02548at 2696.891 kb on - strand, within CCNA_02548at 2696.891 kb on - strand, within CCNA_02548at 2696.891 kb on - strand, within CCNA_02548at 2696.896 kb on - strand, within CCNA_02548at 2696.896 kb on - strand, within CCNA_02548at 2696.896 kb on - strand, within CCNA_02548at 2696.896 kb on - strand, within CCNA_02548at 2696.896 kb on - strand, within CCNA_02548at 2696.896 kb on - strand, within CCNA_02548at 2696.901 kb on - strand, within CCNA_02548at 2696.991 kb on + strand, within CCNA_02548at 2697.007 kb on - strand, within CCNA_02548at 2697.007 kb on - strand, within CCNA_02548at 2697.030 kb on - strandat 2697.030 kb on - strandat 2697.151 kb on + strandat 2697.221 kb on + strand, within CCNA_02549at 2697.244 kb on - strand, within CCNA_02549at 2697.244 kb on - strand, within CCNA_02549at 2697.267 kb on + strand, within CCNA_02549at 2697.267 kb on + strand, within CCNA_02549at 2697.267 kb on + strand, within CCNA_02549at 2697.269 kb on - strand, within CCNA_02549at 2697.303 kb on + strand, within CCNA_02549at 2697.306 kb on - strand, within CCNA_02549at 2697.331 kb on - strand, within CCNA_02549at 2697.338 kb on - strand, within CCNA_02549at 2697.415 kb on - strand, within CCNA_02549at 2697.496 kb on + strand, within CCNA_02549at 2697.552 kb on + strand, within CCNA_02549at 2697.561 kb on + strand, within CCNA_02549at 2697.566 kb on + strand, within CCNA_02549at 2697.566 kb on + strand, within CCNA_02549at 2697.566 kb on + strand, within CCNA_02549at 2697.569 kb on - strand, within CCNA_02549at 2697.574 kb on - strand, within CCNA_02549at 2697.577 kb on + strand, within CCNA_02549at 2697.579 kb on - strand, within CCNA_02549at 2697.587 kb on - strand, within CCNA_02549at 2697.625 kb on + strand, within CCNA_02549at 2697.713 kb on - strand, within CCNA_02549at 2697.725 kb on - strand, within CCNA_02549at 2697.735 kb on - strand, within CCNA_02549at 2697.753 kb on + strand, within CCNA_02549at 2697.758 kb on + strand, within CCNA_02549at 2697.761 kb on - strand, within CCNA_02549at 2697.764 kb on + strand, within CCNA_02549at 2697.767 kb on - strand, within CCNA_02549at 2697.802 kb on + strand, within CCNA_02549at 2697.842 kb on + strand, within CCNA_02549at 2697.905 kb on + strandat 2697.905 kb on + strandat 2697.905 kb on + strandat 2697.908 kb on - strandat 2697.912 kb on + strandat 2697.913 kb on - strandat 2697.913 kb on - strandat 2697.920 kb on - strandat 2697.936 kb on - strandat 2697.948 kb on + strandat 2697.952 kb on + strandat 2697.956 kb on - strandat 2697.956 kb on - strandat 2697.976 kb on - strandat 2697.989 kb on - strandat 2698.007 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL
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2,695,484 - CCNA_02546 0.66 +0.2
2,695,484 - CCNA_02546 0.66 +0.2
2,695,484 - CCNA_02546 0.66 +0.8
2,695,503 - CCNA_02546 0.68 +0.5
2,695,503 - CCNA_02546 0.68 -0.1
2,695,527 - CCNA_02546 0.69 +0.3
2,695,537 + CCNA_02546 0.70 +0.6
2,695,584 + CCNA_02546 0.74 -0.3
2,695,593 - CCNA_02546 0.74 +0.1
2,695,609 + CCNA_02546 0.75 +0.1
2,695,656 + CCNA_02546 0.79 -1.0
2,695,685 - CCNA_02546 0.81 +0.2
2,695,707 - CCNA_02546 0.83 +0.4
2,695,751 - CCNA_02546 0.86 +0.4
2,695,755 + CCNA_02546 0.86 -0.3
2,695,820 + -0.4
2,695,820 + -2.0
2,695,820 + -0.5
2,695,820 + -0.5
2,695,828 - +0.5
2,695,828 - -0.0
2,695,828 - +0.3
2,695,828 - -0.3
2,695,833 - +0.6
2,695,860 + -0.4
2,695,862 + -0.3
2,695,874 + -1.2
2,695,875 - +0.1
2,695,930 + +0.7
2,695,930 + -2.2
2,695,938 - -1.4
2,695,938 - -1.0
2,696,318 + -1.4
2,696,318 + -0.6
2,696,318 + +0.0
2,696,318 + -0.2
2,696,318 + -0.2
2,696,318 + -0.6
2,696,326 - +1.2
2,696,326 - -0.2
2,696,395 + -0.8
2,696,400 + +0.2
2,696,401 - +1.1
2,696,403 - +0.9
2,696,403 - -0.4
2,696,448 + -0.5
2,696,466 + -0.4
2,696,471 + +0.2
2,696,479 - -0.7
2,696,484 - +0.0
2,696,491 + -0.2
2,696,491 + -0.2
2,696,499 - +0.8
2,696,518 + CCNA_02548 0.12 -0.4
2,696,526 - CCNA_02548 0.13 +0.0
2,696,526 - CCNA_02548 0.13 +0.3
2,696,529 + CCNA_02548 0.14 -0.0
2,696,540 + CCNA_02548 0.15 -0.5
2,696,540 + CCNA_02548 0.15 +0.0
2,696,540 + CCNA_02548 0.15 +0.8
2,696,548 - CCNA_02548 0.17 -0.6
2,696,575 - CCNA_02548 0.21 -0.7
2,696,575 - CCNA_02548 0.21 -0.7
2,696,596 - CCNA_02548 0.24 +0.2
2,696,596 - CCNA_02548 0.24 -0.6
2,696,598 + CCNA_02548 0.24 -0.2
2,696,618 - CCNA_02548 0.27 -0.2
2,696,628 - CCNA_02548 0.29 -0.0
2,696,692 + CCNA_02548 0.39 -0.3
2,696,700 - CCNA_02548 0.40 -0.0
2,696,705 - CCNA_02548 0.41 +0.1
2,696,758 + CCNA_02548 0.49 +0.2
2,696,781 - CCNA_02548 0.53 -0.0
2,696,804 + CCNA_02548 0.56 +0.3
2,696,819 + CCNA_02548 0.58 +2.2
2,696,828 + CCNA_02548 0.60 +0.8
2,696,835 + CCNA_02548 0.61 -0.1
2,696,836 + CCNA_02548 0.61 -0.1
2,696,844 - CCNA_02548 0.62 +0.3
2,696,859 - CCNA_02548 0.65 +1.4
2,696,859 - CCNA_02548 0.65 -0.3
2,696,859 - CCNA_02548 0.65 +0.2
2,696,860 - CCNA_02548 0.65 +0.2
2,696,871 - CCNA_02548 0.67 +0.4
2,696,872 + CCNA_02548 0.67 -0.5
2,696,881 - CCNA_02548 0.68 -0.2
2,696,888 + CCNA_02548 0.69 +0.1
2,696,891 - CCNA_02548 0.70 +1.0
2,696,891 - CCNA_02548 0.70 +1.1
2,696,891 - CCNA_02548 0.70 +0.4
2,696,896 - CCNA_02548 0.70 -0.5
2,696,896 - CCNA_02548 0.70 -0.7
2,696,896 - CCNA_02548 0.70 -2.1
2,696,896 - CCNA_02548 0.70 -0.4
2,696,896 - CCNA_02548 0.70 +0.2
2,696,896 - CCNA_02548 0.70 -0.4
2,696,901 - CCNA_02548 0.71 -0.3
2,696,991 + CCNA_02548 0.85 +0.1
2,697,007 - CCNA_02548 0.88 +0.0
2,697,007 - CCNA_02548 0.88 -0.1
2,697,030 - +0.1
2,697,030 - -0.1
2,697,151 + -0.8
2,697,221 + CCNA_02549 0.15 +0.1
2,697,244 - CCNA_02549 0.18 -0.8
2,697,244 - CCNA_02549 0.18 -0.9
2,697,267 + CCNA_02549 0.21 -0.0
2,697,267 + CCNA_02549 0.21 +0.2
2,697,267 + CCNA_02549 0.21 +0.2
2,697,269 - CCNA_02549 0.21 +0.0
2,697,303 + CCNA_02549 0.25 +1.6
2,697,306 - CCNA_02549 0.25 -0.2
2,697,331 - CCNA_02549 0.28 -0.9
2,697,338 - CCNA_02549 0.29 -0.7
2,697,415 - CCNA_02549 0.37 -1.2
2,697,496 + CCNA_02549 0.46 +0.9
2,697,552 + CCNA_02549 0.53 -1.2
2,697,561 + CCNA_02549 0.54 +0.6
2,697,566 + CCNA_02549 0.54 +0.2
2,697,566 + CCNA_02549 0.54 +1.8
2,697,566 + CCNA_02549 0.54 -0.4
2,697,569 - CCNA_02549 0.54 -0.5
2,697,574 - CCNA_02549 0.55 -0.6
2,697,577 + CCNA_02549 0.55 +0.8
2,697,579 - CCNA_02549 0.56 +0.5
2,697,587 - CCNA_02549 0.56 -0.6
2,697,625 + CCNA_02549 0.61 +0.2
2,697,713 - CCNA_02549 0.71 +0.5
2,697,725 - CCNA_02549 0.72 +0.3
2,697,735 - CCNA_02549 0.73 -0.1
2,697,753 + CCNA_02549 0.75 +0.0
2,697,758 + CCNA_02549 0.76 +1.8
2,697,761 - CCNA_02549 0.76 +0.1
2,697,764 + CCNA_02549 0.76 +2.0
2,697,767 - CCNA_02549 0.77 -0.6
2,697,802 + CCNA_02549 0.81 +0.7
2,697,842 + CCNA_02549 0.85 +0.3
2,697,905 + +0.6
2,697,905 + +0.0
2,697,905 + -0.4
2,697,908 - -0.3
2,697,912 + +1.5
2,697,913 - +1.4
2,697,913 - +0.5
2,697,920 - +0.7
2,697,936 - -1.2
2,697,948 + +0.6
2,697,952 + +1.2
2,697,956 - +0.5
2,697,956 - -0.6
2,697,976 - -0.1
2,697,989 - -0.1
2,698,007 + -0.2

Or see this region's nucleotide sequence