Experiment: PYE with CHIR-090 40 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02505 and CCNA_02506 are separated by 360 nucleotides CCNA_02506 and CCNA_R0062 are separated by 203 nucleotides CCNA_R0062 and CCNA_02507 are separated by 140 nucleotides CCNA_02507 and CCNA_02508 are separated by 187 nucleotides
CCNA_02505: CCNA_02505 - type IV secretory pathway, VirB11 ATPase, at 2,654,745 to 2,655,713
_02505
CCNA_02506: CCNA_02506 - transposase/integrase-related peptide, at 2,656,074 to 2,656,214
_02506
CCNA_R0062: CCNA_R0062 - tRNA-Ser, at 2,656,418 to 2,656,508
_R0062
CCNA_02507: CCNA_02507 - polyisoprenylphosphate hexose-1-phosphotransferase hfsE, at 2,656,649 to 2,658,154
_02507
CCNA_02508: CCNA_02508 - oligosaccharide translocase/flippase hfsF, at 2,658,342 to 2,659,604
_02508
Position (kb)
2656
2657
2658
2659 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2655.833 kb on + strand at 2655.835 kb on + strand at 2655.835 kb on + strand at 2655.835 kb on + strand at 2655.866 kb on - strand at 2655.904 kb on + strand at 2655.910 kb on + strand at 2655.911 kb on - strand at 2655.926 kb on - strand at 2655.982 kb on + strand at 2655.983 kb on - strand at 2655.989 kb on - strand at 2655.989 kb on - strand at 2655.989 kb on - strand at 2656.030 kb on + strand at 2656.031 kb on - strand at 2656.048 kb on - strand at 2656.083 kb on + strand at 2656.105 kb on + strand, within CCNA_02506 at 2656.145 kb on + strand, within CCNA_02506 at 2656.153 kb on - strand, within CCNA_02506 at 2656.193 kb on - strand, within CCNA_02506 at 2656.220 kb on - strand at 2656.221 kb on + strand at 2656.259 kb on - strand at 2656.384 kb on - strand at 2656.671 kb on - strand at 2656.671 kb on - strand at 2656.676 kb on + strand at 2656.677 kb on - strand at 2656.697 kb on - strand at 2656.801 kb on + strand, within CCNA_02507 at 2656.801 kb on + strand, within CCNA_02507 at 2656.809 kb on - strand, within CCNA_02507 at 2656.932 kb on + strand, within CCNA_02507 at 2656.958 kb on + strand, within CCNA_02507 at 2656.972 kb on + strand, within CCNA_02507 at 2656.980 kb on - strand, within CCNA_02507 at 2656.980 kb on - strand, within CCNA_02507 at 2656.980 kb on - strand, within CCNA_02507 at 2657.008 kb on - strand, within CCNA_02507 at 2657.045 kb on - strand, within CCNA_02507 at 2657.051 kb on - strand, within CCNA_02507 at 2657.060 kb on + strand, within CCNA_02507 at 2657.242 kb on + strand, within CCNA_02507 at 2657.270 kb on + strand, within CCNA_02507 at 2657.295 kb on + strand, within CCNA_02507 at 2657.311 kb on - strand, within CCNA_02507 at 2657.317 kb on - strand, within CCNA_02507 at 2657.380 kb on + strand, within CCNA_02507 at 2657.380 kb on + strand, within CCNA_02507 at 2657.384 kb on - strand, within CCNA_02507 at 2657.388 kb on - strand, within CCNA_02507 at 2657.390 kb on + strand, within CCNA_02507 at 2657.482 kb on - strand, within CCNA_02507 at 2657.489 kb on + strand, within CCNA_02507 at 2657.497 kb on - strand, within CCNA_02507 at 2657.524 kb on + strand, within CCNA_02507 at 2657.532 kb on - strand, within CCNA_02507 at 2657.548 kb on - strand, within CCNA_02507 at 2657.558 kb on + strand, within CCNA_02507 at 2657.560 kb on + strand, within CCNA_02507 at 2657.560 kb on + strand, within CCNA_02507 at 2657.568 kb on - strand, within CCNA_02507 at 2657.591 kb on + strand, within CCNA_02507 at 2657.599 kb on - strand, within CCNA_02507 at 2657.655 kb on + strand, within CCNA_02507 at 2657.666 kb on + strand, within CCNA_02507 at 2657.674 kb on - strand, within CCNA_02507 at 2657.765 kb on + strand, within CCNA_02507 at 2657.770 kb on + strand, within CCNA_02507 at 2657.773 kb on - strand, within CCNA_02507 at 2657.821 kb on + strand, within CCNA_02507 at 2657.821 kb on + strand, within CCNA_02507 at 2657.826 kb on + strand, within CCNA_02507 at 2657.826 kb on + strand, within CCNA_02507 at 2657.834 kb on - strand, within CCNA_02507 at 2657.834 kb on - strand, within CCNA_02507 at 2657.864 kb on + strand, within CCNA_02507 at 2657.879 kb on + strand, within CCNA_02507 at 2658.087 kb on + strand at 2658.094 kb on + strand at 2658.102 kb on - strand at 2658.125 kb on + strand at 2658.146 kb on - strand at 2658.148 kb on + strand at 2658.148 kb on + strand at 2658.148 kb on + strand at 2658.156 kb on - strand at 2658.212 kb on - strand at 2658.232 kb on - strand at 2658.237 kb on + strand at 2658.237 kb on - strand at 2658.239 kb on + strand at 2658.239 kb on + strand at 2658.247 kb on - strand at 2658.259 kb on - strand at 2658.273 kb on + strand at 2658.281 kb on - strand at 2658.309 kb on - strand at 2658.314 kb on - strand at 2658.328 kb on + strand at 2658.331 kb on - strand at 2658.350 kb on + strand at 2658.421 kb on + strand at 2658.426 kb on + strand at 2658.426 kb on + strand at 2658.429 kb on - strand at 2658.434 kb on - strand at 2658.434 kb on - strand at 2658.434 kb on - strand at 2658.451 kb on + strand at 2658.456 kb on + strand at 2658.456 kb on + strand at 2658.456 kb on + strand at 2658.461 kb on + strand at 2658.464 kb on - strand at 2658.464 kb on - strand at 2658.471 kb on + strand, within CCNA_02508 at 2658.479 kb on - strand, within CCNA_02508 at 2658.484 kb on - strand, within CCNA_02508 at 2658.519 kb on + strand, within CCNA_02508 at 2658.545 kb on + strand, within CCNA_02508 at 2658.594 kb on - strand, within CCNA_02508 at 2658.611 kb on - strand, within CCNA_02508 at 2658.651 kb on + strand, within CCNA_02508 at 2658.651 kb on + strand, within CCNA_02508 at 2658.651 kb on + strand, within CCNA_02508 at 2658.680 kb on + strand, within CCNA_02508 at 2658.693 kb on + strand, within CCNA_02508 at 2658.693 kb on + strand, within CCNA_02508 at 2658.750 kb on + strand, within CCNA_02508 at 2658.758 kb on - strand, within CCNA_02508 at 2658.803 kb on - strand, within CCNA_02508 at 2658.825 kb on + strand, within CCNA_02508 at 2658.830 kb on + strand, within CCNA_02508 at 2658.830 kb on + strand, within CCNA_02508 at 2658.830 kb on + strand, within CCNA_02508 at 2658.830 kb on + strand, within CCNA_02508 at 2658.830 kb on + strand, within CCNA_02508 at 2658.838 kb on - strand, within CCNA_02508 at 2658.859 kb on - strand, within CCNA_02508 at 2658.938 kb on - strand, within CCNA_02508 at 2658.966 kb on - strand, within CCNA_02508 at 2658.971 kb on - strand, within CCNA_02508 at 2659.007 kb on - strand, within CCNA_02508 at 2659.023 kb on - strand, within CCNA_02508
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL remove 2,655,833 + -0.4 2,655,835 + +1.0 2,655,835 + +0.7 2,655,835 + -0.2 2,655,866 - -1.2 2,655,904 + -2.0 2,655,910 + +0.5 2,655,911 - -0.9 2,655,926 - -0.8 2,655,982 + -0.4 2,655,983 - -0.1 2,655,989 - +0.2 2,655,989 - -1.1 2,655,989 - -0.7 2,656,030 + -1.0 2,656,031 - +0.5 2,656,048 - -1.3 2,656,083 + +0.3 2,656,105 + CCNA_02506 0.22 +0.1 2,656,145 + CCNA_02506 0.50 +0.2 2,656,153 - CCNA_02506 0.56 -1.4 2,656,193 - CCNA_02506 0.84 -0.8 2,656,220 - -1.1 2,656,221 + -1.2 2,656,259 - -0.3 2,656,384 - -0.7 2,656,671 - -0.8 2,656,671 - -0.8 2,656,676 + -0.5 2,656,677 - -0.1 2,656,697 - +1.1 2,656,801 + CCNA_02507 0.10 -0.1 2,656,801 + CCNA_02507 0.10 +0.0 2,656,809 - CCNA_02507 0.11 +0.6 2,656,932 + CCNA_02507 0.19 +0.3 2,656,958 + CCNA_02507 0.21 +0.0 2,656,972 + CCNA_02507 0.21 -0.4 2,656,980 - CCNA_02507 0.22 -3.1 2,656,980 - CCNA_02507 0.22 -0.2 2,656,980 - CCNA_02507 0.22 -0.1 2,657,008 - CCNA_02507 0.24 +0.2 2,657,045 - CCNA_02507 0.26 -1.5 2,657,051 - CCNA_02507 0.27 +0.3 2,657,060 + CCNA_02507 0.27 +0.4 2,657,242 + CCNA_02507 0.39 -0.0 2,657,270 + CCNA_02507 0.41 -0.2 2,657,295 + CCNA_02507 0.43 -1.1 2,657,311 - CCNA_02507 0.44 -0.9 2,657,317 - CCNA_02507 0.44 +0.8 2,657,380 + CCNA_02507 0.49 +0.8 2,657,380 + CCNA_02507 0.49 +0.1 2,657,384 - CCNA_02507 0.49 -0.3 2,657,388 - CCNA_02507 0.49 -1.0 2,657,390 + CCNA_02507 0.49 -0.4 2,657,482 - CCNA_02507 0.55 -1.1 2,657,489 + CCNA_02507 0.56 +0.1 2,657,497 - CCNA_02507 0.56 -0.9 2,657,524 + CCNA_02507 0.58 +0.1 2,657,532 - CCNA_02507 0.59 +0.4 2,657,548 - CCNA_02507 0.60 +0.2 2,657,558 + CCNA_02507 0.60 -0.6 2,657,560 + CCNA_02507 0.60 +0.6 2,657,560 + CCNA_02507 0.60 +0.9 2,657,568 - CCNA_02507 0.61 +1.5 2,657,591 + CCNA_02507 0.63 -0.4 2,657,599 - CCNA_02507 0.63 +1.0 2,657,655 + CCNA_02507 0.67 +0.1 2,657,666 + CCNA_02507 0.68 -0.3 2,657,674 - CCNA_02507 0.68 -0.5 2,657,765 + CCNA_02507 0.74 -0.3 2,657,770 + CCNA_02507 0.74 -0.4 2,657,773 - CCNA_02507 0.75 +0.7 2,657,821 + CCNA_02507 0.78 +0.7 2,657,821 + CCNA_02507 0.78 +1.0 2,657,826 + CCNA_02507 0.78 -0.2 2,657,826 + CCNA_02507 0.78 -0.2 2,657,834 - CCNA_02507 0.79 -0.4 2,657,834 - CCNA_02507 0.79 -0.6 2,657,864 + CCNA_02507 0.81 +0.3 2,657,879 + CCNA_02507 0.82 -0.6 2,658,087 + +0.1 2,658,094 + +0.5 2,658,102 - -0.1 2,658,125 + +0.2 2,658,146 - -0.8 2,658,148 + +0.3 2,658,148 + +0.3 2,658,148 + +0.3 2,658,156 - -0.5 2,658,212 - -0.4 2,658,232 - -0.4 2,658,237 + +0.5 2,658,237 - -0.6 2,658,239 + +0.3 2,658,239 + +2.0 2,658,247 - -0.9 2,658,259 - -0.7 2,658,273 + -0.2 2,658,281 - -0.4 2,658,309 - +0.2 2,658,314 - -0.1 2,658,328 + -0.3 2,658,331 - -0.7 2,658,350 + -0.1 2,658,421 + +0.1 2,658,426 + +0.1 2,658,426 + +1.8 2,658,429 - -0.7 2,658,434 - +1.2 2,658,434 - -0.1 2,658,434 - -1.2 2,658,451 + +0.0 2,658,456 + +0.3 2,658,456 + +1.9 2,658,456 + +0.2 2,658,461 + -0.1 2,658,464 - -1.4 2,658,464 - +2.2 2,658,471 + CCNA_02508 0.10 +0.9 2,658,479 - CCNA_02508 0.11 -0.1 2,658,484 - CCNA_02508 0.11 -0.5 2,658,519 + CCNA_02508 0.14 +0.3 2,658,545 + CCNA_02508 0.16 +0.1 2,658,594 - CCNA_02508 0.20 +0.7 2,658,611 - CCNA_02508 0.21 -1.5 2,658,651 + CCNA_02508 0.24 +0.8 2,658,651 + CCNA_02508 0.24 -0.5 2,658,651 + CCNA_02508 0.24 -0.1 2,658,680 + CCNA_02508 0.27 +0.4 2,658,693 + CCNA_02508 0.28 +0.1 2,658,693 + CCNA_02508 0.28 +0.4 2,658,750 + CCNA_02508 0.32 +0.2 2,658,758 - CCNA_02508 0.33 -0.1 2,658,803 - CCNA_02508 0.37 +1.2 2,658,825 + CCNA_02508 0.38 +0.9 2,658,830 + CCNA_02508 0.39 +0.9 2,658,830 + CCNA_02508 0.39 +0.8 2,658,830 + CCNA_02508 0.39 -0.1 2,658,830 + CCNA_02508 0.39 +0.7 2,658,830 + CCNA_02508 0.39 -0.0 2,658,838 - CCNA_02508 0.39 -0.3 2,658,859 - CCNA_02508 0.41 +0.3 2,658,938 - CCNA_02508 0.47 +0.3 2,658,966 - CCNA_02508 0.49 -0.0 2,658,971 - CCNA_02508 0.50 -1.1 2,659,007 - CCNA_02508 0.53 -0.0 2,659,023 - CCNA_02508 0.54 +0.1
Or see this region's nucleotide sequence