Experiment: PYE with CHIR-090 40 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02085 and CCNA_02086 overlap by 4 nucleotides CCNA_02086 and CCNA_02087 are separated by 169 nucleotides CCNA_02087 and CCNA_02088 are separated by 88 nucleotides CCNA_02088 and CCNA_02089 are separated by 4 nucleotides CCNA_02089 and CCNA_02090 overlap by 1 nucleotides
CCNA_02085: CCNA_02085 - anhydromuramoyl-peptide exo-beta-N-acetylglucosaminidase, at 2,234,353 to 2,235,390
_02085
CCNA_02086: CCNA_02086 - cell division protein FtsN, at 2,235,387 to 2,236,187
_02086
CCNA_02087: CCNA_02087 - deoxyguanosinetriphosphate triphosphohydrolase, at 2,236,357 to 2,237,541
_02087
CCNA_02088: CCNA_02088 - HesB protein family, at 2,237,630 to 2,237,962
_02088
CCNA_02089: CCNA_02089 - hypothetical protein, at 2,237,967 to 2,238,341
_02089
CCNA_02090: CCNA_02090 - exodeoxyribonuclease III, at 2,238,341 to 2,239,129
_02090
Position (kb)
2236
2237
2238 Strain fitness (log2 ratio)
-2
-1
0
1 at 2235.357 kb on - strand at 2235.357 kb on - strand at 2235.374 kb on + strand at 2236.227 kb on - strand at 2236.237 kb on + strand at 2236.252 kb on + strand at 2236.262 kb on + strand at 2236.265 kb on - strand at 2236.278 kb on + strand at 2236.286 kb on - strand at 2236.286 kb on - strand at 2236.295 kb on - strand at 2236.295 kb on - strand at 2236.310 kb on + strand at 2236.313 kb on + strand at 2236.318 kb on - strand at 2236.345 kb on + strand at 2236.348 kb on - strand at 2236.350 kb on + strand at 2236.368 kb on - strand at 2236.368 kb on - strand at 2236.376 kb on - strand at 2236.448 kb on - strand at 2236.465 kb on - strand at 2236.503 kb on + strand, within CCNA_02087 at 2236.542 kb on + strand, within CCNA_02087 at 2236.550 kb on - strand, within CCNA_02087 at 2236.559 kb on - strand, within CCNA_02087 at 2236.586 kb on + strand, within CCNA_02087 at 2236.586 kb on + strand, within CCNA_02087 at 2236.586 kb on + strand, within CCNA_02087 at 2236.594 kb on - strand, within CCNA_02087 at 2236.610 kb on + strand, within CCNA_02087 at 2236.618 kb on - strand, within CCNA_02087 at 2236.634 kb on + strand, within CCNA_02087 at 2236.659 kb on - strand, within CCNA_02087 at 2236.722 kb on + strand, within CCNA_02087 at 2236.725 kb on - strand, within CCNA_02087 at 2236.754 kb on - strand, within CCNA_02087 at 2236.754 kb on - strand, within CCNA_02087 at 2236.754 kb on - strand, within CCNA_02087 at 2236.754 kb on - strand, within CCNA_02087 at 2236.772 kb on + strand, within CCNA_02087 at 2236.772 kb on + strand, within CCNA_02087 at 2236.772 kb on + strand, within CCNA_02087 at 2236.772 kb on + strand, within CCNA_02087 at 2236.780 kb on - strand, within CCNA_02087 at 2236.780 kb on - strand, within CCNA_02087 at 2236.780 kb on - strand, within CCNA_02087 at 2236.780 kb on - strand, within CCNA_02087 at 2236.808 kb on + strand, within CCNA_02087 at 2236.835 kb on + strand, within CCNA_02087 at 2236.838 kb on - strand, within CCNA_02087 at 2236.843 kb on - strand, within CCNA_02087 at 2236.861 kb on - strand, within CCNA_02087 at 2236.910 kb on - strand, within CCNA_02087 at 2236.912 kb on + strand, within CCNA_02087 at 2236.930 kb on + strand, within CCNA_02087 at 2236.937 kb on + strand, within CCNA_02087 at 2236.937 kb on + strand, within CCNA_02087 at 2236.938 kb on - strand, within CCNA_02087 at 2236.948 kb on + strand, within CCNA_02087 at 2236.951 kb on - strand, within CCNA_02087 at 2236.988 kb on - strand, within CCNA_02087 at 2237.018 kb on - strand, within CCNA_02087 at 2237.021 kb on + strand, within CCNA_02087 at 2237.029 kb on - strand, within CCNA_02087 at 2237.039 kb on - strand, within CCNA_02087 at 2237.083 kb on + strand, within CCNA_02087 at 2237.083 kb on + strand, within CCNA_02087 at 2237.083 kb on + strand, within CCNA_02087 at 2237.092 kb on - strand, within CCNA_02087 at 2237.096 kb on - strand, within CCNA_02087 at 2237.097 kb on - strand, within CCNA_02087 at 2237.097 kb on - strand, within CCNA_02087 at 2237.111 kb on - strand, within CCNA_02087 at 2237.116 kb on - strand, within CCNA_02087 at 2237.116 kb on - strand, within CCNA_02087 at 2237.118 kb on + strand, within CCNA_02087 at 2237.121 kb on - strand, within CCNA_02087 at 2237.137 kb on - strand, within CCNA_02087 at 2237.143 kb on + strand, within CCNA_02087 at 2237.144 kb on + strand, within CCNA_02087 at 2237.227 kb on + strand, within CCNA_02087 at 2237.227 kb on + strand, within CCNA_02087 at 2237.227 kb on + strand, within CCNA_02087 at 2237.228 kb on - strand, within CCNA_02087 at 2237.235 kb on - strand, within CCNA_02087 at 2237.235 kb on - strand, within CCNA_02087 at 2237.252 kb on + strand, within CCNA_02087 at 2237.259 kb on - strand, within CCNA_02087 at 2237.259 kb on - strand, within CCNA_02087 at 2237.283 kb on - strand, within CCNA_02087 at 2237.283 kb on - strand, within CCNA_02087 at 2237.283 kb on - strand, within CCNA_02087 at 2237.294 kb on - strand, within CCNA_02087 at 2237.319 kb on + strand, within CCNA_02087 at 2237.319 kb on + strand, within CCNA_02087 at 2237.327 kb on - strand, within CCNA_02087 at 2237.334 kb on - strand, within CCNA_02087 at 2237.334 kb on - strand, within CCNA_02087 at 2237.368 kb on + strand, within CCNA_02087 at 2237.371 kb on - strand, within CCNA_02087 at 2237.376 kb on - strand, within CCNA_02087 at 2237.413 kb on - strand, within CCNA_02087 at 2237.439 kb on + strand at 2237.439 kb on + strand at 2237.439 kb on + strand at 2237.439 kb on + strand at 2237.447 kb on - strand at 2237.447 kb on - strand at 2237.452 kb on + strand at 2237.463 kb on + strand at 2237.471 kb on - strand at 2237.529 kb on + strand at 2237.529 kb on - strand at 2237.539 kb on - strand at 2237.566 kb on + strand at 2237.573 kb on - strand at 2237.593 kb on - strand at 2237.599 kb on + strand at 2237.603 kb on - strand at 2237.607 kb on - strand at 2237.635 kb on - strand at 2237.635 kb on - strand at 2237.651 kb on - strand at 2237.682 kb on - strand, within CCNA_02088 at 2237.693 kb on + strand, within CCNA_02088 at 2237.706 kb on + strand, within CCNA_02088 at 2237.707 kb on - strand, within CCNA_02088 at 2237.714 kb on - strand, within CCNA_02088 at 2237.714 kb on - strand, within CCNA_02088 at 2237.714 kb on - strand, within CCNA_02088 at 2237.714 kb on - strand, within CCNA_02088 at 2237.736 kb on - strand, within CCNA_02088 at 2237.778 kb on + strand, within CCNA_02088 at 2237.794 kb on + strand, within CCNA_02088 at 2237.949 kb on + strand at 2237.978 kb on - strand at 2237.982 kb on + strand at 2238.007 kb on + strand, within CCNA_02089 at 2238.007 kb on + strand, within CCNA_02089 at 2238.007 kb on + strand, within CCNA_02089 at 2238.015 kb on - strand, within CCNA_02089 at 2238.018 kb on + strand, within CCNA_02089 at 2238.034 kb on + strand, within CCNA_02089 at 2238.042 kb on - strand, within CCNA_02089 at 2238.063 kb on - strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.111 kb on - strand, within CCNA_02089 at 2238.111 kb on - strand, within CCNA_02089 at 2238.111 kb on - strand, within CCNA_02089 at 2238.111 kb on - strand, within CCNA_02089 at 2238.111 kb on - strand, within CCNA_02089 at 2238.111 kb on - strand, within CCNA_02089 at 2238.146 kb on + strand, within CCNA_02089 at 2238.154 kb on - strand, within CCNA_02089 at 2238.174 kb on + strand, within CCNA_02089 at 2238.182 kb on - strand, within CCNA_02089 at 2238.182 kb on - strand, within CCNA_02089 at 2238.192 kb on + strand, within CCNA_02089 at 2238.200 kb on - strand, within CCNA_02089 at 2238.205 kb on - strand, within CCNA_02089 at 2238.252 kb on + strand, within CCNA_02089 at 2238.276 kb on + strand, within CCNA_02089 at 2238.306 kb on - strand at 2238.335 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL remove 2,235,357 - +0.1 2,235,357 - +1.1 2,235,374 + -1.4 2,236,227 - +0.5 2,236,237 + +0.0 2,236,252 + -0.1 2,236,262 + -0.2 2,236,265 - -0.4 2,236,278 + +0.1 2,236,286 - +0.3 2,236,286 - +0.5 2,236,295 - +0.4 2,236,295 - -0.0 2,236,310 + -0.2 2,236,313 + -0.5 2,236,318 - -0.0 2,236,345 + -1.6 2,236,348 - +0.3 2,236,350 + -0.7 2,236,368 - +1.0 2,236,368 - +0.6 2,236,376 - -0.0 2,236,448 - +0.2 2,236,465 - -0.2 2,236,503 + CCNA_02087 0.12 -2.1 2,236,542 + CCNA_02087 0.16 -1.0 2,236,550 - CCNA_02087 0.16 -0.4 2,236,559 - CCNA_02087 0.17 +0.5 2,236,586 + CCNA_02087 0.19 -1.6 2,236,586 + CCNA_02087 0.19 -1.6 2,236,586 + CCNA_02087 0.19 +0.6 2,236,594 - CCNA_02087 0.20 -0.0 2,236,610 + CCNA_02087 0.21 -1.2 2,236,618 - CCNA_02087 0.22 +0.5 2,236,634 + CCNA_02087 0.23 -0.1 2,236,659 - CCNA_02087 0.25 +0.4 2,236,722 + CCNA_02087 0.31 +0.5 2,236,725 - CCNA_02087 0.31 +0.2 2,236,754 - CCNA_02087 0.34 +0.3 2,236,754 - CCNA_02087 0.34 +1.6 2,236,754 - CCNA_02087 0.34 -0.2 2,236,754 - CCNA_02087 0.34 -0.2 2,236,772 + CCNA_02087 0.35 -0.3 2,236,772 + CCNA_02087 0.35 -1.0 2,236,772 + CCNA_02087 0.35 -0.7 2,236,772 + CCNA_02087 0.35 -0.6 2,236,780 - CCNA_02087 0.36 +0.0 2,236,780 - CCNA_02087 0.36 +0.6 2,236,780 - CCNA_02087 0.36 -0.1 2,236,780 - CCNA_02087 0.36 -0.2 2,236,808 + CCNA_02087 0.38 +1.1 2,236,835 + CCNA_02087 0.40 -0.3 2,236,838 - CCNA_02087 0.41 +0.1 2,236,843 - CCNA_02087 0.41 -1.1 2,236,861 - CCNA_02087 0.43 +0.1 2,236,910 - CCNA_02087 0.47 -0.3 2,236,912 + CCNA_02087 0.47 +0.5 2,236,930 + CCNA_02087 0.48 +0.7 2,236,937 + CCNA_02087 0.49 -0.4 2,236,937 + CCNA_02087 0.49 -0.5 2,236,938 - CCNA_02087 0.49 -1.0 2,236,948 + CCNA_02087 0.50 -0.2 2,236,951 - CCNA_02087 0.50 +0.2 2,236,988 - CCNA_02087 0.53 +0.3 2,237,018 - CCNA_02087 0.56 +0.4 2,237,021 + CCNA_02087 0.56 -1.0 2,237,029 - CCNA_02087 0.57 +0.5 2,237,039 - CCNA_02087 0.58 +0.4 2,237,083 + CCNA_02087 0.61 -0.6 2,237,083 + CCNA_02087 0.61 -1.2 2,237,083 + CCNA_02087 0.61 -0.1 2,237,092 - CCNA_02087 0.62 -0.1 2,237,096 - CCNA_02087 0.62 -0.1 2,237,097 - CCNA_02087 0.62 +0.1 2,237,097 - CCNA_02087 0.62 -0.7 2,237,111 - CCNA_02087 0.64 +0.1 2,237,116 - CCNA_02087 0.64 -0.5 2,237,116 - CCNA_02087 0.64 +0.6 2,237,118 + CCNA_02087 0.64 -1.4 2,237,121 - CCNA_02087 0.64 +0.4 2,237,137 - CCNA_02087 0.66 +0.7 2,237,143 + CCNA_02087 0.66 -0.1 2,237,144 + CCNA_02087 0.66 +0.4 2,237,227 + CCNA_02087 0.73 -0.5 2,237,227 + CCNA_02087 0.73 -0.2 2,237,227 + CCNA_02087 0.73 -0.2 2,237,228 - CCNA_02087 0.74 -1.5 2,237,235 - CCNA_02087 0.74 +0.7 2,237,235 - CCNA_02087 0.74 +1.3 2,237,252 + CCNA_02087 0.76 -0.7 2,237,259 - CCNA_02087 0.76 +0.8 2,237,259 - CCNA_02087 0.76 +0.6 2,237,283 - CCNA_02087 0.78 -0.0 2,237,283 - CCNA_02087 0.78 -0.3 2,237,283 - CCNA_02087 0.78 +0.4 2,237,294 - CCNA_02087 0.79 -0.5 2,237,319 + CCNA_02087 0.81 -0.1 2,237,319 + CCNA_02087 0.81 +0.1 2,237,327 - CCNA_02087 0.82 -0.2 2,237,334 - CCNA_02087 0.82 -1.7 2,237,334 - CCNA_02087 0.82 +0.0 2,237,368 + CCNA_02087 0.85 -0.7 2,237,371 - CCNA_02087 0.86 +0.0 2,237,376 - CCNA_02087 0.86 +0.0 2,237,413 - CCNA_02087 0.89 +0.6 2,237,439 + +0.6 2,237,439 + -0.9 2,237,439 + -0.7 2,237,439 + -1.4 2,237,447 - +0.1 2,237,447 - -0.3 2,237,452 + +0.4 2,237,463 + -0.5 2,237,471 - -0.3 2,237,529 + +0.3 2,237,529 - +1.4 2,237,539 - -0.8 2,237,566 + -1.9 2,237,573 - -0.6 2,237,593 - -2.0 2,237,599 + +0.4 2,237,603 - -1.9 2,237,607 - -0.3 2,237,635 - -0.3 2,237,635 - -0.9 2,237,651 - +0.3 2,237,682 - CCNA_02088 0.16 -0.4 2,237,693 + CCNA_02088 0.19 +0.8 2,237,706 + CCNA_02088 0.23 -1.8 2,237,707 - CCNA_02088 0.23 -1.0 2,237,714 - CCNA_02088 0.25 +0.1 2,237,714 - CCNA_02088 0.25 +0.6 2,237,714 - CCNA_02088 0.25 -0.6 2,237,714 - CCNA_02088 0.25 +0.1 2,237,736 - CCNA_02088 0.32 +0.4 2,237,778 + CCNA_02088 0.44 -0.6 2,237,794 + CCNA_02088 0.49 -0.6 2,237,949 + -0.1 2,237,978 - -0.4 2,237,982 + +0.2 2,238,007 + CCNA_02089 0.11 +0.7 2,238,007 + CCNA_02089 0.11 -0.3 2,238,007 + CCNA_02089 0.11 +1.3 2,238,015 - CCNA_02089 0.13 -0.0 2,238,018 + CCNA_02089 0.14 -0.0 2,238,034 + CCNA_02089 0.18 +0.1 2,238,042 - CCNA_02089 0.20 +0.2 2,238,063 - CCNA_02089 0.26 -0.3 2,238,103 + CCNA_02089 0.36 +0.0 2,238,103 + CCNA_02089 0.36 -0.0 2,238,103 + CCNA_02089 0.36 -0.1 2,238,103 + CCNA_02089 0.36 +0.2 2,238,103 + CCNA_02089 0.36 -0.4 2,238,103 + CCNA_02089 0.36 +0.3 2,238,103 + CCNA_02089 0.36 +0.5 2,238,103 + CCNA_02089 0.36 +0.2 2,238,103 + CCNA_02089 0.36 +0.2 2,238,103 + CCNA_02089 0.36 -0.0 2,238,103 + CCNA_02089 0.36 +1.1 2,238,103 + CCNA_02089 0.36 +0.0 2,238,103 + CCNA_02089 0.36 +0.3 2,238,103 + CCNA_02089 0.36 -1.8 2,238,103 + CCNA_02089 0.36 +0.8 2,238,103 + CCNA_02089 0.36 +1.1 2,238,111 - CCNA_02089 0.38 -0.4 2,238,111 - CCNA_02089 0.38 -1.4 2,238,111 - CCNA_02089 0.38 +0.5 2,238,111 - CCNA_02089 0.38 -0.5 2,238,111 - CCNA_02089 0.38 -0.4 2,238,111 - CCNA_02089 0.38 +0.5 2,238,146 + CCNA_02089 0.48 -0.2 2,238,154 - CCNA_02089 0.50 +1.0 2,238,174 + CCNA_02089 0.55 -0.1 2,238,182 - CCNA_02089 0.57 +0.4 2,238,182 - CCNA_02089 0.57 +1.0 2,238,192 + CCNA_02089 0.60 -0.7 2,238,200 - CCNA_02089 0.62 -0.3 2,238,205 - CCNA_02089 0.63 +0.0 2,238,252 + CCNA_02089 0.76 -0.3 2,238,276 + CCNA_02089 0.82 -0.5 2,238,306 - +0.6 2,238,335 - +0.2
Or see this region's nucleotide sequence