Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01119

Experiment: PYE with CHIR-090 40 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with CHIR-090 40 ug/mL
1,222,726	+		CCNA_01117	0.47	-1.6
1,222,734	-		CCNA_01117	0.48	+0.7
1,222,756	-		CCNA_01117	0.51	+0.4
1,222,761	-		CCNA_01117	0.51	+0.3
1,222,791	-		CCNA_01117	0.55	+0.2
1,222,826	-		CCNA_01117	0.58	+0.4
1,222,832	+		CCNA_01117	0.59	-0.3
1,222,840	-		CCNA_01117	0.60	-0.1
1,222,850	-		CCNA_01117	0.61	+0.4
1,223,026	+		CCNA_01117	0.81	+0.1
1,223,068	-		CCNA_01117	0.86	-0.1
1,223,106	+		CCNA_01117	0.90	-0.7
1,223,111	+				-0.8
1,223,127	+				+0.5
1,223,170	+				+0.8
1,223,175	+				-0.1
1,223,180	+				-0.7
1,223,185	+				+0.4
1,223,192	+				-0.2
1,223,200	-				+0.0
1,223,200	-				+0.3
1,223,200	-				+0.3
1,223,237	-				+0.2
1,223,377	-		CCNA_01118	0.34	-1.1
1,223,413	+		CCNA_01118	0.45	+0.8
1,223,483	+		CCNA_01118	0.66	+0.0
1,223,483	+		CCNA_01118	0.66	-1.7
1,223,572	+				-0.5
1,223,582	+				-2.0
1,223,590	-				+1.1
1,223,598	+				-0.2
1,223,631	+				-0.2
1,223,631	+				-0.3
1,223,639	-				-0.1
1,223,685	+				+0.4
1,223,685	+				+0.3
1,223,685	+				+0.5
1,223,685	+				+0.1
1,223,685	+				+0.2
1,223,693	-				+0.8
1,223,693	-				+0.5
1,223,693	-				-0.5
1,223,693	-				+0.5
1,223,703	-				+2.1
1,223,705	-				-2.3
1,223,705	-				-0.5
1,223,739	-				-1.8
1,223,754	-				-1.2
1,223,754	-				-0.7
1,223,754	-				+0.0
1,223,817	-		CCNA_01119	0.25	-0.2
1,223,822	+		CCNA_01119	0.26	-0.3
1,223,835	-		CCNA_01119	0.30	+0.5
1,223,844	+		CCNA_01119	0.32	+0.8
1,223,846	+		CCNA_01119	0.33	-0.4
1,223,847	-		CCNA_01119	0.33	+0.5
1,223,894	-		CCNA_01119	0.45	-2.2
1,223,894	-		CCNA_01119	0.45	+0.8
1,223,910	-		CCNA_01119	0.49	+0.2
1,223,915	-		CCNA_01119	0.51	+2.0
1,223,921	+		CCNA_01119	0.52	+0.8
1,223,931	-		CCNA_01119	0.55	-1.8
1,223,938	+		CCNA_01119	0.57	+0.4
1,223,938	+		CCNA_01119	0.57	+0.2
1,223,943	+		CCNA_01119	0.58	+0.6
1,223,945	+		CCNA_01119	0.59	+0.0
1,223,959	-		CCNA_01119	0.62	-1.5
1,224,005	+		CCNA_01119	0.74	-1.5
1,224,014	-		CCNA_01119	0.77	-1.4
1,224,062	-		CCNA_01119	0.89	-1.1
1,224,097	+				-0.2
1,224,106	-				+1.2
1,224,126	-				+0.0
1,224,135	+				-0.1
1,224,153	+				+0.2
1,224,219	-		CCNA_01120	0.22	-0.9
1,224,219	-		CCNA_01120	0.22	-0.2
1,224,266	-		CCNA_01120	0.58	-0.1
1,224,267	-		CCNA_01120	0.58	-0.2
1,224,432	-				-1.2
1,224,457	+				+0.7
1,224,504	-				-0.2
1,224,540	-				-0.1
1,224,544	+				-0.2
1,224,544	+				-1.2
1,224,552	-				-0.8
1,224,570	+				-0.2
1,224,574	+				-0.7
1,224,589	+				+0.1
1,224,600	+				+0.1
1,224,613	+				-1.0
1,224,622	+				+0.2
1,224,623	-				+0.1
1,224,624	+				-0.6
1,224,637	+				-1.2
1,224,669	+		CCNA_01121	0.12	-0.7
1,224,670	+		CCNA_01121	0.12	-0.2
1,224,676	-		CCNA_01121	0.12	+0.2
1,224,677	-		CCNA_01121	0.12	-0.2
1,224,723	+		CCNA_01121	0.15	-0.3
1,224,731	-		CCNA_01121	0.16	+0.1
1,224,757	-		CCNA_01121	0.17	-1.0
1,224,769	+		CCNA_01121	0.18	-0.8
1,224,813	+		CCNA_01121	0.21	+1.0
1,224,819	-		CCNA_01121	0.22	-0.3
1,224,821	-		CCNA_01121	0.22	-0.4
1,224,861	+		CCNA_01121	0.24	-0.5
1,224,861	+		CCNA_01121	0.24	-0.6
1,224,871	-		CCNA_01121	0.25	+1.5
1,224,909	-		CCNA_01121	0.27	+1.1
1,224,916	+		CCNA_01121	0.28	-1.2
1,224,921	+		CCNA_01121	0.28	+0.5
1,224,924	-		CCNA_01121	0.28	-0.6
1,224,924	-		CCNA_01121	0.28	+0.6
1,224,952	+		CCNA_01121	0.30	-0.3
1,224,957	+		CCNA_01121	0.31	+0.3
1,224,958	+		CCNA_01121	0.31	+1.0
1,224,964	+		CCNA_01121	0.31	+0.0
1,224,965	-		CCNA_01121	0.31	-1.0
1,224,970	-		CCNA_01121	0.31	-1.2
1,224,972	-		CCNA_01121	0.32	+1.0
1,225,017	+		CCNA_01121	0.35	-0.5
1,225,025	-		CCNA_01121	0.35	+0.4
1,225,030	-		CCNA_01121	0.35	-0.8
1,225,042	+		CCNA_01121	0.36	+0.1
1,225,044	+		CCNA_01121	0.36	+2.2
1,225,055	+		CCNA_01121	0.37	+0.1
1,225,060	-		CCNA_01121	0.37	-0.6
1,225,060	-		CCNA_01121	0.37	+1.0
1,225,060	-		CCNA_01121	0.37	-1.0
1,225,060	-		CCNA_01121	0.37	+0.1
1,225,083	-		CCNA_01121	0.39	-0.4
1,225,091	+		CCNA_01121	0.39	+0.4