Experiment: PYE with CHIR-090 40 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00869 and CCNA_00870 are separated by 65 nucleotides CCNA_00870 and CCNA_00871 are separated by 19 nucleotides CCNA_00871 and CCNA_00872 overlap by 4 nucleotides CCNA_00872 and CCNA_00873 are separated by 28 nucleotides
CCNA_00869: CCNA_00869 - DNA modification methyltransferase-related protein, at 947,426 to 950,383
_00869
CCNA_00870: CCNA_00870 - hypothetical protein, at 950,449 to 950,886
_00870
CCNA_00871: CCNA_00871 - carbon-nitrogen hydrolase family protein, at 950,906 to 951,757
_00871
CCNA_00872: CCNA_00872 - glutaredoxin, at 951,754 to 952,008
_00872
CCNA_00873: CCNA_00873 - amidophosphoribosyltransferase family protein, at 952,037 to 952,834
_00873
Position (kb) 950
951
952 Strain fitness (log2 ratio) -2
-1
0
1
2 at 949.930 kb on + strand, within CCNA_00869 at 949.957 kb on - strand, within CCNA_00869 at 949.995 kb on - strand, within CCNA_00869 at 950.050 kb on - strand, within CCNA_00869 at 950.065 kb on + strand, within CCNA_00869 at 950.074 kb on + strand, within CCNA_00869 at 950.082 kb on - strand, within CCNA_00869 at 950.111 kb on + strand at 950.112 kb on - strand at 950.119 kb on - strand at 950.120 kb on - strand at 950.123 kb on + strand at 950.162 kb on - strand at 950.162 kb on - strand at 950.162 kb on - strand at 950.191 kb on - strand at 950.233 kb on + strand at 950.246 kb on - strand at 950.349 kb on - strand at 950.349 kb on - strand at 950.386 kb on - strand at 950.386 kb on - strand at 950.387 kb on - strand at 950.387 kb on - strand at 950.388 kb on - strand at 950.432 kb on + strand at 950.447 kb on + strand at 950.503 kb on - strand, within CCNA_00870 at 950.503 kb on - strand, within CCNA_00870 at 950.507 kb on + strand, within CCNA_00870 at 950.518 kb on + strand, within CCNA_00870 at 950.527 kb on - strand, within CCNA_00870 at 950.603 kb on - strand, within CCNA_00870 at 950.607 kb on - strand, within CCNA_00870 at 950.682 kb on + strand, within CCNA_00870 at 950.726 kb on - strand, within CCNA_00870 at 950.742 kb on - strand, within CCNA_00870 at 950.764 kb on + strand, within CCNA_00870 at 950.783 kb on + strand, within CCNA_00870 at 950.793 kb on + strand, within CCNA_00870 at 950.798 kb on + strand, within CCNA_00870 at 950.801 kb on - strand, within CCNA_00870 at 950.887 kb on + strand at 950.895 kb on - strand at 950.905 kb on + strand at 950.913 kb on - strand at 950.941 kb on - strand at 950.978 kb on + strand at 950.986 kb on - strand at 951.029 kb on + strand, within CCNA_00871 at 951.052 kb on + strand, within CCNA_00871 at 951.070 kb on - strand, within CCNA_00871 at 951.085 kb on + strand, within CCNA_00871 at 951.098 kb on - strand, within CCNA_00871 at 951.112 kb on + strand, within CCNA_00871 at 951.120 kb on - strand, within CCNA_00871 at 951.125 kb on + strand, within CCNA_00871 at 951.200 kb on + strand, within CCNA_00871 at 951.208 kb on - strand, within CCNA_00871 at 951.208 kb on - strand, within CCNA_00871 at 951.218 kb on + strand, within CCNA_00871 at 951.226 kb on - strand, within CCNA_00871 at 951.269 kb on + strand, within CCNA_00871 at 951.274 kb on + strand, within CCNA_00871 at 951.280 kb on + strand, within CCNA_00871 at 951.292 kb on - strand, within CCNA_00871 at 951.338 kb on - strand, within CCNA_00871 at 951.369 kb on + strand, within CCNA_00871 at 951.369 kb on + strand, within CCNA_00871 at 951.482 kb on + strand, within CCNA_00871 at 951.482 kb on + strand, within CCNA_00871 at 951.482 kb on + strand, within CCNA_00871 at 951.482 kb on + strand, within CCNA_00871 at 951.490 kb on - strand, within CCNA_00871 at 951.547 kb on - strand, within CCNA_00871 at 951.567 kb on + strand, within CCNA_00871 at 951.567 kb on - strand, within CCNA_00871 at 951.575 kb on - strand, within CCNA_00871 at 951.575 kb on - strand, within CCNA_00871 at 951.596 kb on - strand, within CCNA_00871 at 951.617 kb on - strand, within CCNA_00871 at 951.637 kb on + strand, within CCNA_00871 at 951.645 kb on - strand, within CCNA_00871 at 951.683 kb on + strand at 951.686 kb on - strand at 951.691 kb on - strand at 951.691 kb on - strand at 951.691 kb on - strand at 951.691 kb on - strand at 951.696 kb on - strand at 951.696 kb on - strand at 951.716 kb on + strand at 951.716 kb on + strand at 951.742 kb on + strand at 951.742 kb on + strand at 951.750 kb on - strand at 951.762 kb on + strand at 951.770 kb on - strand at 951.815 kb on - strand, within CCNA_00872 at 951.823 kb on - strand, within CCNA_00872 at 951.841 kb on + strand, within CCNA_00872 at 951.841 kb on + strand, within CCNA_00872 at 951.849 kb on - strand, within CCNA_00872 at 951.871 kb on - strand, within CCNA_00872 at 951.900 kb on - strand, within CCNA_00872 at 951.905 kb on - strand, within CCNA_00872 at 951.986 kb on + strand at 951.992 kb on + strand at 951.993 kb on - strand at 951.998 kb on + strand at 952.000 kb on - strand at 952.000 kb on - strand at 952.005 kb on - strand at 952.034 kb on + strand at 952.044 kb on - strand at 952.044 kb on - strand at 952.046 kb on - strand at 952.067 kb on - strand at 952.067 kb on - strand at 952.084 kb on + strand at 952.087 kb on - strand at 952.127 kb on + strand, within CCNA_00873 at 952.148 kb on + strand, within CCNA_00873 at 952.148 kb on + strand, within CCNA_00873 at 952.148 kb on + strand, within CCNA_00873 at 952.166 kb on - strand, within CCNA_00873 at 952.205 kb on + strand, within CCNA_00873 at 952.222 kb on - strand, within CCNA_00873 at 952.248 kb on + strand, within CCNA_00873 at 952.288 kb on + strand, within CCNA_00873 at 952.297 kb on - strand, within CCNA_00873 at 952.376 kb on + strand, within CCNA_00873 at 952.378 kb on + strand, within CCNA_00873 at 952.378 kb on + strand, within CCNA_00873 at 952.384 kb on + strand, within CCNA_00873 at 952.399 kb on - strand, within CCNA_00873 at 952.424 kb on - strand, within CCNA_00873 at 952.429 kb on - strand, within CCNA_00873 at 952.463 kb on - strand, within CCNA_00873 at 952.504 kb on + strand, within CCNA_00873 at 952.504 kb on + strand, within CCNA_00873 at 952.504 kb on + strand, within CCNA_00873 at 952.512 kb on - strand, within CCNA_00873 at 952.512 kb on - strand, within CCNA_00873 at 952.512 kb on - strand, within CCNA_00873 at 952.550 kb on - strand, within CCNA_00873 at 952.555 kb on - strand, within CCNA_00873 at 952.555 kb on - strand, within CCNA_00873 at 952.559 kb on + strand, within CCNA_00873 at 952.560 kb on + strand, within CCNA_00873 at 952.560 kb on + strand, within CCNA_00873 at 952.560 kb on + strand, within CCNA_00873 at 952.560 kb on + strand, within CCNA_00873 at 952.560 kb on + strand, within CCNA_00873 at 952.560 kb on + strand, within CCNA_00873 at 952.567 kb on - strand, within CCNA_00873 at 952.568 kb on - strand, within CCNA_00873 at 952.568 kb on - strand, within CCNA_00873 at 952.568 kb on - strand, within CCNA_00873 at 952.568 kb on - strand, within CCNA_00873 at 952.568 kb on - strand, within CCNA_00873 at 952.568 kb on - strand, within CCNA_00873 at 952.568 kb on - strand, within CCNA_00873 at 952.572 kb on + strand, within CCNA_00873 at 952.579 kb on + strand, within CCNA_00873 at 952.579 kb on - strand, within CCNA_00873 at 952.584 kb on + strand, within CCNA_00873 at 952.608 kb on + strand, within CCNA_00873 at 952.608 kb on + strand, within CCNA_00873 at 952.619 kb on + strand, within CCNA_00873 at 952.621 kb on - strand, within CCNA_00873 at 952.621 kb on - strand, within CCNA_00873 at 952.671 kb on - strand, within CCNA_00873 at 952.694 kb on + strand, within CCNA_00873 at 952.699 kb on + strand, within CCNA_00873 at 952.699 kb on + strand, within CCNA_00873 at 952.702 kb on - strand, within CCNA_00873 at 952.707 kb on - strand, within CCNA_00873
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL remove 949,930 + CCNA_00869 0.85 -0.3 949,957 - CCNA_00869 0.86 -0.0 949,995 - CCNA_00869 0.87 +0.4 950,050 - CCNA_00869 0.89 +0.2 950,065 + CCNA_00869 0.89 -0.8 950,074 + CCNA_00869 0.90 -0.6 950,082 - CCNA_00869 0.90 -0.3 950,111 + +0.9 950,112 - +0.3 950,119 - -1.0 950,120 - +0.2 950,123 + -0.1 950,162 - +0.1 950,162 - -2.3 950,162 - +0.8 950,191 - +0.8 950,233 + -1.0 950,246 - -0.5 950,349 - +0.2 950,349 - +0.4 950,386 - +0.2 950,386 - -0.1 950,387 - +0.5 950,387 - -0.1 950,388 - +0.4 950,432 + -2.2 950,447 + +0.0 950,503 - CCNA_00870 0.12 -0.0 950,503 - CCNA_00870 0.12 -0.5 950,507 + CCNA_00870 0.13 +0.7 950,518 + CCNA_00870 0.16 +0.1 950,527 - CCNA_00870 0.18 +0.3 950,603 - CCNA_00870 0.35 +0.0 950,607 - CCNA_00870 0.36 +0.0 950,682 + CCNA_00870 0.53 -0.3 950,726 - CCNA_00870 0.63 +0.1 950,742 - CCNA_00870 0.67 -0.3 950,764 + CCNA_00870 0.72 +1.0 950,783 + CCNA_00870 0.76 +0.7 950,793 + CCNA_00870 0.79 +1.9 950,798 + CCNA_00870 0.80 +0.6 950,801 - CCNA_00870 0.80 +0.3 950,887 + +1.3 950,895 - -2.2 950,905 + -0.8 950,913 - -0.3 950,941 - +0.1 950,978 + -0.3 950,986 - +1.5 951,029 + CCNA_00871 0.14 -0.4 951,052 + CCNA_00871 0.17 -0.7 951,070 - CCNA_00871 0.19 +1.0 951,085 + CCNA_00871 0.21 -0.0 951,098 - CCNA_00871 0.23 +0.2 951,112 + CCNA_00871 0.24 -0.9 951,120 - CCNA_00871 0.25 +0.1 951,125 + CCNA_00871 0.26 -0.7 951,200 + CCNA_00871 0.35 +0.2 951,208 - CCNA_00871 0.35 +0.4 951,208 - CCNA_00871 0.35 +0.5 951,218 + CCNA_00871 0.37 -0.1 951,226 - CCNA_00871 0.38 -0.2 951,269 + CCNA_00871 0.43 -0.2 951,274 + CCNA_00871 0.43 +0.2 951,280 + CCNA_00871 0.44 -0.1 951,292 - CCNA_00871 0.45 +0.9 951,338 - CCNA_00871 0.51 +0.1 951,369 + CCNA_00871 0.54 +0.2 951,369 + CCNA_00871 0.54 -0.0 951,482 + CCNA_00871 0.68 +0.5 951,482 + CCNA_00871 0.68 -1.5 951,482 + CCNA_00871 0.68 -1.5 951,482 + CCNA_00871 0.68 +0.9 951,490 - CCNA_00871 0.69 +0.2 951,547 - CCNA_00871 0.75 +0.2 951,567 + CCNA_00871 0.78 -1.5 951,567 - CCNA_00871 0.78 +0.2 951,575 - CCNA_00871 0.79 +0.3 951,575 - CCNA_00871 0.79 +0.5 951,596 - CCNA_00871 0.81 -0.3 951,617 - CCNA_00871 0.83 -0.1 951,637 + CCNA_00871 0.86 -0.5 951,645 - CCNA_00871 0.87 -0.7 951,683 + -1.1 951,686 - +0.3 951,691 - -1.0 951,691 - +0.0 951,691 - +0.3 951,691 - -1.6 951,696 - +0.9 951,696 - -0.1 951,716 + -0.6 951,716 + -0.2 951,742 + +0.1 951,742 + -0.0 951,750 - +0.7 951,762 + +2.7 951,770 - +0.4 951,815 - CCNA_00872 0.24 +0.0 951,823 - CCNA_00872 0.27 -0.4 951,841 + CCNA_00872 0.34 -1.0 951,841 + CCNA_00872 0.34 -0.6 951,849 - CCNA_00872 0.37 +0.3 951,871 - CCNA_00872 0.46 -0.5 951,900 - CCNA_00872 0.57 -0.7 951,905 - CCNA_00872 0.59 +0.6 951,986 + +0.9 951,992 + +0.9 951,993 - -0.0 951,998 + +0.3 952,000 - -0.2 952,000 - +0.1 952,005 - +0.4 952,034 + -0.4 952,044 - -1.9 952,044 - -1.0 952,046 - +0.9 952,067 - -1.6 952,067 - +0.7 952,084 + +0.7 952,087 - -0.5 952,127 + CCNA_00873 0.11 +0.1 952,148 + CCNA_00873 0.14 +1.1 952,148 + CCNA_00873 0.14 -0.8 952,148 + CCNA_00873 0.14 -1.8 952,166 - CCNA_00873 0.16 -0.3 952,205 + CCNA_00873 0.21 -0.5 952,222 - CCNA_00873 0.23 -0.4 952,248 + CCNA_00873 0.26 -0.7 952,288 + CCNA_00873 0.31 -0.1 952,297 - CCNA_00873 0.33 -0.4 952,376 + CCNA_00873 0.42 -0.2 952,378 + CCNA_00873 0.43 -0.6 952,378 + CCNA_00873 0.43 -0.7 952,384 + CCNA_00873 0.43 -1.5 952,399 - CCNA_00873 0.45 -0.7 952,424 - CCNA_00873 0.48 +0.4 952,429 - CCNA_00873 0.49 -0.6 952,463 - CCNA_00873 0.53 +0.1 952,504 + CCNA_00873 0.59 -0.1 952,504 + CCNA_00873 0.59 +0.3 952,504 + CCNA_00873 0.59 +0.7 952,512 - CCNA_00873 0.60 +0.3 952,512 - CCNA_00873 0.60 +1.6 952,512 - CCNA_00873 0.60 +0.4 952,550 - CCNA_00873 0.64 -0.8 952,555 - CCNA_00873 0.65 -0.1 952,555 - CCNA_00873 0.65 -1.2 952,559 + CCNA_00873 0.65 +0.1 952,560 + CCNA_00873 0.66 -0.1 952,560 + CCNA_00873 0.66 -1.3 952,560 + CCNA_00873 0.66 -1.0 952,560 + CCNA_00873 0.66 -0.7 952,560 + CCNA_00873 0.66 +0.7 952,560 + CCNA_00873 0.66 -0.0 952,567 - CCNA_00873 0.66 -0.3 952,568 - CCNA_00873 0.67 +2.2 952,568 - CCNA_00873 0.67 -1.4 952,568 - CCNA_00873 0.67 +0.7 952,568 - CCNA_00873 0.67 -1.0 952,568 - CCNA_00873 0.67 +0.3 952,568 - CCNA_00873 0.67 +0.1 952,568 - CCNA_00873 0.67 -0.1 952,572 + CCNA_00873 0.67 -0.9 952,579 + CCNA_00873 0.68 +0.7 952,579 - CCNA_00873 0.68 +0.3 952,584 + CCNA_00873 0.69 +0.9 952,608 + CCNA_00873 0.72 -1.7 952,608 + CCNA_00873 0.72 -0.4 952,619 + CCNA_00873 0.73 +1.2 952,621 - CCNA_00873 0.73 -0.3 952,621 - CCNA_00873 0.73 +0.2 952,671 - CCNA_00873 0.79 -0.7 952,694 + CCNA_00873 0.82 -2.3 952,699 + CCNA_00873 0.83 -0.1 952,699 + CCNA_00873 0.83 -0.0 952,702 - CCNA_00873 0.83 -0.2 952,707 - CCNA_00873 0.84 -0.0
Or see this region's nucleotide sequence