Experiment: PYE with CHIR-090 40 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00594 and CCNA_00595 are separated by 556 nucleotides CCNA_00595 and CCNA_00596 overlap by 43 nucleotides CCNA_00596 and CCNA_00597 are separated by 158 nucleotides
CCNA_00594: CCNA_00594 - hypothetical protein, at 624,522 to 626,342
_00594
CCNA_00595: CCNA_00595 - FecR family protein, at 626,899 to 627,888
_00595
CCNA_00596: CCNA_00596 - RpoE-family sigma factor, at 627,846 to 628,364
_00596
CCNA_00597: CCNA_00597 - TonB-dependent receptor, at 628,523 to 631,663
_00597
Position (kb) 626
627
628 Strain fitness (log2 ratio) -2
-1
0
1
2 at 625.924 kb on + strand, within CCNA_00594 at 625.926 kb on + strand, within CCNA_00594 at 625.974 kb on + strand, within CCNA_00594 at 625.974 kb on + strand, within CCNA_00594 at 626.009 kb on + strand, within CCNA_00594 at 626.009 kb on + strand, within CCNA_00594 at 626.009 kb on + strand, within CCNA_00594 at 626.032 kb on + strand, within CCNA_00594 at 626.032 kb on + strand, within CCNA_00594 at 626.032 kb on + strand, within CCNA_00594 at 626.032 kb on + strand, within CCNA_00594 at 626.032 kb on + strand, within CCNA_00594 at 626.037 kb on + strand, within CCNA_00594 at 626.062 kb on - strand, within CCNA_00594 at 626.064 kb on - strand, within CCNA_00594 at 626.082 kb on - strand, within CCNA_00594 at 626.084 kb on + strand, within CCNA_00594 at 626.092 kb on + strand, within CCNA_00594 at 626.092 kb on + strand, within CCNA_00594 at 626.100 kb on - strand, within CCNA_00594 at 626.102 kb on + strand, within CCNA_00594 at 626.102 kb on + strand, within CCNA_00594 at 626.102 kb on + strand, within CCNA_00594 at 626.130 kb on + strand, within CCNA_00594 at 626.138 kb on - strand, within CCNA_00594 at 626.145 kb on - strand, within CCNA_00594 at 626.155 kb on + strand, within CCNA_00594 at 626.178 kb on - strand at 626.178 kb on - strand at 626.203 kb on + strand at 626.225 kb on - strand at 626.250 kb on + strand at 626.270 kb on - strand at 626.274 kb on + strand at 626.277 kb on - strand at 626.282 kb on - strand at 626.284 kb on - strand at 626.298 kb on - strand at 626.333 kb on + strand at 626.336 kb on - strand at 626.348 kb on - strand at 626.367 kb on + strand at 626.367 kb on - strand at 626.375 kb on - strand at 626.406 kb on + strand at 626.406 kb on + strand at 626.414 kb on - strand at 626.454 kb on - strand at 626.459 kb on - strand at 626.471 kb on + strand at 626.479 kb on - strand at 626.479 kb on - strand at 626.481 kb on + strand at 626.489 kb on - strand at 626.489 kb on - strand at 626.492 kb on + strand at 626.492 kb on + strand at 626.492 kb on + strand at 626.492 kb on + strand at 626.495 kb on - strand at 626.500 kb on - strand at 626.515 kb on + strand at 626.523 kb on - strand at 626.532 kb on + strand at 626.583 kb on + strand at 626.591 kb on - strand at 626.663 kb on - strand at 626.664 kb on + strand at 626.664 kb on + strand at 626.666 kb on + strand at 626.672 kb on - strand at 626.674 kb on - strand at 626.674 kb on - strand at 626.710 kb on + strand at 626.710 kb on + strand at 626.710 kb on + strand at 626.710 kb on + strand at 626.710 kb on - strand at 626.720 kb on + strand at 626.731 kb on + strand at 626.745 kb on + strand at 626.764 kb on - strand at 626.806 kb on - strand at 626.817 kb on - strand at 626.839 kb on - strand at 626.842 kb on - strand at 626.854 kb on - strand at 626.855 kb on - strand at 626.856 kb on - strand at 626.858 kb on + strand at 626.858 kb on + strand at 626.858 kb on + strand at 626.866 kb on - strand at 626.866 kb on - strand at 626.866 kb on - strand at 626.893 kb on - strand at 626.904 kb on - strand at 626.914 kb on - strand at 626.947 kb on + strand at 626.954 kb on + strand at 627.022 kb on + strand, within CCNA_00595 at 627.030 kb on - strand, within CCNA_00595 at 627.030 kb on - strand, within CCNA_00595 at 627.043 kb on + strand, within CCNA_00595 at 627.043 kb on + strand, within CCNA_00595 at 627.043 kb on + strand, within CCNA_00595 at 627.051 kb on - strand, within CCNA_00595 at 627.051 kb on - strand, within CCNA_00595 at 627.051 kb on - strand, within CCNA_00595 at 627.051 kb on - strand, within CCNA_00595 at 627.052 kb on - strand, within CCNA_00595 at 627.103 kb on + strand, within CCNA_00595 at 627.103 kb on + strand, within CCNA_00595 at 627.103 kb on + strand, within CCNA_00595 at 627.103 kb on + strand, within CCNA_00595 at 627.111 kb on - strand, within CCNA_00595 at 627.111 kb on - strand, within CCNA_00595 at 627.111 kb on - strand, within CCNA_00595 at 627.111 kb on - strand, within CCNA_00595 at 627.111 kb on - strand, within CCNA_00595 at 627.111 kb on - strand, within CCNA_00595 at 627.111 kb on - strand, within CCNA_00595 at 627.111 kb on - strand, within CCNA_00595 at 627.111 kb on - strand, within CCNA_00595 at 627.128 kb on - strand, within CCNA_00595 at 627.187 kb on + strand, within CCNA_00595 at 627.196 kb on + strand, within CCNA_00595 at 627.196 kb on + strand, within CCNA_00595 at 627.204 kb on - strand, within CCNA_00595 at 627.206 kb on + strand, within CCNA_00595 at 627.206 kb on + strand, within CCNA_00595 at 627.209 kb on - strand, within CCNA_00595 at 627.220 kb on + strand, within CCNA_00595 at 627.220 kb on + strand, within CCNA_00595 at 627.228 kb on - strand, within CCNA_00595 at 627.300 kb on + strand, within CCNA_00595 at 627.309 kb on - strand, within CCNA_00595 at 627.314 kb on - strand, within CCNA_00595 at 627.320 kb on + strand, within CCNA_00595 at 627.321 kb on + strand, within CCNA_00595 at 627.328 kb on - strand, within CCNA_00595 at 627.371 kb on - strand, within CCNA_00595 at 627.380 kb on + strand, within CCNA_00595 at 627.380 kb on + strand, within CCNA_00595 at 627.380 kb on + strand, within CCNA_00595 at 627.385 kb on + strand, within CCNA_00595 at 627.388 kb on - strand, within CCNA_00595 at 627.388 kb on - strand, within CCNA_00595 at 627.388 kb on - strand, within CCNA_00595 at 627.388 kb on - strand, within CCNA_00595 at 627.388 kb on - strand, within CCNA_00595 at 627.526 kb on + strand, within CCNA_00595 at 627.534 kb on - strand, within CCNA_00595 at 627.534 kb on - strand, within CCNA_00595 at 627.546 kb on - strand, within CCNA_00595 at 627.550 kb on + strand, within CCNA_00595 at 627.551 kb on + strand, within CCNA_00595 at 627.558 kb on - strand, within CCNA_00595 at 627.558 kb on - strand, within CCNA_00595 at 627.558 kb on - strand, within CCNA_00595 at 627.565 kb on + strand, within CCNA_00595 at 627.585 kb on - strand, within CCNA_00595 at 627.598 kb on + strand, within CCNA_00595 at 627.627 kb on - strand, within CCNA_00595 at 627.672 kb on + strand, within CCNA_00595 at 627.680 kb on - strand, within CCNA_00595 at 627.683 kb on + strand, within CCNA_00595 at 627.729 kb on + strand, within CCNA_00595 at 627.759 kb on - strand, within CCNA_00595 at 627.777 kb on + strand, within CCNA_00595 at 627.817 kb on - strand at 627.833 kb on + strand at 627.833 kb on + strand at 627.863 kb on - strand at 627.867 kb on - strand at 627.867 kb on - strand at 627.868 kb on + strand at 627.875 kb on + strand at 627.876 kb on - strand at 627.876 kb on - strand at 627.878 kb on + strand at 627.899 kb on - strand, within CCNA_00596 at 627.903 kb on + strand, within CCNA_00596 at 627.904 kb on + strand, within CCNA_00596 at 627.912 kb on + strand, within CCNA_00596 at 627.920 kb on - strand, within CCNA_00596 at 627.920 kb on - strand, within CCNA_00596 at 627.920 kb on - strand, within CCNA_00596 at 628.006 kb on + strand, within CCNA_00596 at 628.014 kb on - strand, within CCNA_00596 at 628.014 kb on - strand, within CCNA_00596 at 628.016 kb on + strand, within CCNA_00596 at 628.016 kb on + strand, within CCNA_00596 at 628.024 kb on - strand, within CCNA_00596 at 628.030 kb on - strand, within CCNA_00596 at 628.063 kb on + strand, within CCNA_00596 at 628.068 kb on + strand, within CCNA_00596 at 628.068 kb on + strand, within CCNA_00596 at 628.076 kb on + strand, within CCNA_00596 at 628.084 kb on - strand, within CCNA_00596 at 628.084 kb on - strand, within CCNA_00596 at 628.102 kb on - strand, within CCNA_00596 at 628.112 kb on - strand, within CCNA_00596 at 628.129 kb on + strand, within CCNA_00596 at 628.129 kb on + strand, within CCNA_00596 at 628.177 kb on + strand, within CCNA_00596 at 628.184 kb on + strand, within CCNA_00596 at 628.185 kb on - strand, within CCNA_00596 at 628.187 kb on + strand, within CCNA_00596 at 628.192 kb on + strand, within CCNA_00596 at 628.205 kb on - strand, within CCNA_00596 at 628.259 kb on - strand, within CCNA_00596 at 628.267 kb on - strand, within CCNA_00596 at 628.280 kb on + strand, within CCNA_00596 at 628.288 kb on - strand, within CCNA_00596 at 628.290 kb on + strand, within CCNA_00596 at 628.338 kb on - strand at 628.379 kb on + strand at 628.390 kb on + strand at 628.393 kb on - strand at 628.398 kb on - strand at 628.407 kb on + strand at 628.415 kb on - strand at 628.439 kb on - strand at 628.439 kb on - strand at 628.439 kb on - strand at 628.451 kb on + strand at 628.451 kb on + strand at 628.451 kb on + strand at 628.454 kb on - strand at 628.459 kb on - strand at 628.459 kb on - strand at 628.473 kb on - strand at 628.476 kb on + strand at 628.476 kb on + strand at 628.476 kb on + strand at 628.476 kb on + strand at 628.476 kb on + strand at 628.484 kb on - strand at 628.498 kb on - strand at 628.503 kb on + strand at 628.503 kb on + strand at 628.503 kb on + strand at 628.511 kb on + strand at 628.519 kb on + strand at 628.528 kb on - strand at 628.528 kb on - strand at 628.534 kb on - strand at 628.534 kb on - strand at 628.534 kb on - strand at 628.557 kb on + strand at 628.600 kb on + strand at 628.608 kb on - strand at 628.652 kb on + strand at 628.672 kb on - strand at 628.679 kb on - strand at 628.684 kb on - strand at 628.690 kb on - strand at 628.726 kb on - strand at 628.750 kb on - strand at 628.814 kb on + strand at 628.827 kb on - strand at 628.844 kb on + strand, within CCNA_00597 at 628.878 kb on - strand, within CCNA_00597
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL remove 625,924 + CCNA_00594 0.77 -1.2 625,926 + CCNA_00594 0.77 -1.0 625,974 + CCNA_00594 0.80 -2.1 625,974 + CCNA_00594 0.80 -1.7 626,009 + CCNA_00594 0.82 -0.5 626,009 + CCNA_00594 0.82 +1.2 626,009 + CCNA_00594 0.82 -1.0 626,032 + CCNA_00594 0.83 -0.4 626,032 + CCNA_00594 0.83 -1.9 626,032 + CCNA_00594 0.83 -0.7 626,032 + CCNA_00594 0.83 -1.6 626,032 + CCNA_00594 0.83 -1.7 626,037 + CCNA_00594 0.83 +0.2 626,062 - CCNA_00594 0.85 -2.6 626,064 - CCNA_00594 0.85 -0.2 626,082 - CCNA_00594 0.86 +1.2 626,084 + CCNA_00594 0.86 -0.4 626,092 + CCNA_00594 0.86 -1.1 626,092 + CCNA_00594 0.86 +0.7 626,100 - CCNA_00594 0.87 -1.1 626,102 + CCNA_00594 0.87 -1.7 626,102 + CCNA_00594 0.87 +1.6 626,102 + CCNA_00594 0.87 -1.0 626,130 + CCNA_00594 0.88 +1.7 626,138 - CCNA_00594 0.89 -0.6 626,145 - CCNA_00594 0.89 -0.1 626,155 + CCNA_00594 0.90 -1.1 626,178 - -2.0 626,178 - -1.6 626,203 + -0.2 626,225 - +0.2 626,250 + -0.1 626,270 - +2.4 626,274 + +0.5 626,277 - +1.8 626,282 - -0.9 626,284 - +1.4 626,298 - -0.2 626,333 + +0.5 626,336 - -0.3 626,348 - -1.2 626,367 + -0.3 626,367 - -0.5 626,375 - -0.0 626,406 + +0.7 626,406 + +0.6 626,414 - +0.6 626,454 - -0.3 626,459 - -0.8 626,471 + -0.1 626,479 - +0.3 626,479 - -0.7 626,481 + +1.4 626,489 - -0.1 626,489 - +0.2 626,492 + -0.4 626,492 + -0.4 626,492 + -2.1 626,492 + +0.4 626,495 - -0.2 626,500 - -0.5 626,515 + -1.6 626,523 - -0.7 626,532 + -1.7 626,583 + +1.2 626,591 - +0.3 626,663 - -0.5 626,664 + +0.0 626,664 + +0.2 626,666 + -0.0 626,672 - +0.0 626,674 - -0.9 626,674 - +0.7 626,710 + +0.6 626,710 + -0.0 626,710 + -0.3 626,710 + +0.4 626,710 - -1.7 626,720 + -0.3 626,731 + +0.1 626,745 + -0.1 626,764 - +0.4 626,806 - +0.4 626,817 - -1.2 626,839 - +0.3 626,842 - -0.7 626,854 - +0.9 626,855 - -0.8 626,856 - -2.0 626,858 + -0.4 626,858 + -0.3 626,858 + -0.4 626,866 - -1.1 626,866 - -0.5 626,866 - +2.5 626,893 - +0.2 626,904 - +0.0 626,914 - -0.3 626,947 + -0.7 626,954 + -0.7 627,022 + CCNA_00595 0.12 +0.3 627,030 - CCNA_00595 0.13 -0.3 627,030 - CCNA_00595 0.13 +0.0 627,043 + CCNA_00595 0.15 +0.5 627,043 + CCNA_00595 0.15 -0.3 627,043 + CCNA_00595 0.15 -0.4 627,051 - CCNA_00595 0.15 -0.7 627,051 - CCNA_00595 0.15 -0.2 627,051 - CCNA_00595 0.15 +0.1 627,051 - CCNA_00595 0.15 +0.3 627,052 - CCNA_00595 0.15 +0.6 627,103 + CCNA_00595 0.21 -0.1 627,103 + CCNA_00595 0.21 -0.2 627,103 + CCNA_00595 0.21 +0.2 627,103 + CCNA_00595 0.21 -0.5 627,111 - CCNA_00595 0.21 +0.7 627,111 - CCNA_00595 0.21 +0.9 627,111 - CCNA_00595 0.21 +0.8 627,111 - CCNA_00595 0.21 +0.8 627,111 - CCNA_00595 0.21 -0.3 627,111 - CCNA_00595 0.21 +0.0 627,111 - CCNA_00595 0.21 -0.0 627,111 - CCNA_00595 0.21 -0.5 627,111 - CCNA_00595 0.21 +0.9 627,128 - CCNA_00595 0.23 -0.8 627,187 + CCNA_00595 0.29 -1.0 627,196 + CCNA_00595 0.30 -0.3 627,196 + CCNA_00595 0.30 -0.5 627,204 - CCNA_00595 0.31 +1.1 627,206 + CCNA_00595 0.31 +0.8 627,206 + CCNA_00595 0.31 -0.5 627,209 - CCNA_00595 0.31 -0.1 627,220 + CCNA_00595 0.32 -0.3 627,220 + CCNA_00595 0.32 -2.2 627,228 - CCNA_00595 0.33 +0.2 627,300 + CCNA_00595 0.41 +0.5 627,309 - CCNA_00595 0.41 -0.3 627,314 - CCNA_00595 0.42 +0.9 627,320 + CCNA_00595 0.43 -0.7 627,321 + CCNA_00595 0.43 -0.2 627,328 - CCNA_00595 0.43 -0.2 627,371 - CCNA_00595 0.48 +0.2 627,380 + CCNA_00595 0.49 +0.8 627,380 + CCNA_00595 0.49 -0.8 627,380 + CCNA_00595 0.49 -0.1 627,385 + CCNA_00595 0.49 -0.4 627,388 - CCNA_00595 0.49 +0.1 627,388 - CCNA_00595 0.49 +0.0 627,388 - CCNA_00595 0.49 -1.0 627,388 - CCNA_00595 0.49 -0.2 627,388 - CCNA_00595 0.49 +0.4 627,526 + CCNA_00595 0.63 -1.1 627,534 - CCNA_00595 0.64 -0.4 627,534 - CCNA_00595 0.64 +0.4 627,546 - CCNA_00595 0.65 +0.2 627,550 + CCNA_00595 0.66 -0.8 627,551 + CCNA_00595 0.66 -2.3 627,558 - CCNA_00595 0.67 -0.1 627,558 - CCNA_00595 0.67 +0.2 627,558 - CCNA_00595 0.67 +0.1 627,565 + CCNA_00595 0.67 +1.0 627,585 - CCNA_00595 0.69 +0.0 627,598 + CCNA_00595 0.71 +0.5 627,627 - CCNA_00595 0.74 -0.1 627,672 + CCNA_00595 0.78 -1.5 627,680 - CCNA_00595 0.79 -0.2 627,683 + CCNA_00595 0.79 -1.3 627,729 + CCNA_00595 0.84 +0.3 627,759 - CCNA_00595 0.87 +0.2 627,777 + CCNA_00595 0.89 -0.2 627,817 - +0.2 627,833 + -0.8 627,833 + +0.3 627,863 - -0.3 627,867 - +0.3 627,867 - -0.4 627,868 + +0.3 627,875 + -0.3 627,876 - -0.8 627,876 - +0.9 627,878 + +1.6 627,899 - CCNA_00596 0.10 +0.3 627,903 + CCNA_00596 0.11 -0.2 627,904 + CCNA_00596 0.11 -0.8 627,912 + CCNA_00596 0.13 +0.4 627,920 - CCNA_00596 0.14 +0.4 627,920 - CCNA_00596 0.14 +0.7 627,920 - CCNA_00596 0.14 +0.5 628,006 + CCNA_00596 0.31 -1.4 628,014 - CCNA_00596 0.32 -0.2 628,014 - CCNA_00596 0.32 +1.1 628,016 + CCNA_00596 0.33 -0.9 628,016 + CCNA_00596 0.33 +0.3 628,024 - CCNA_00596 0.34 -0.2 628,030 - CCNA_00596 0.35 +0.2 628,063 + CCNA_00596 0.42 +0.5 628,068 + CCNA_00596 0.43 -0.7 628,068 + CCNA_00596 0.43 -1.3 628,076 + CCNA_00596 0.44 +0.1 628,084 - CCNA_00596 0.46 -0.5 628,084 - CCNA_00596 0.46 -0.0 628,102 - CCNA_00596 0.49 -1.4 628,112 - CCNA_00596 0.51 -0.9 628,129 + CCNA_00596 0.55 +0.5 628,129 + CCNA_00596 0.55 -0.3 628,177 + CCNA_00596 0.64 -0.0 628,184 + CCNA_00596 0.65 +0.2 628,185 - CCNA_00596 0.65 +0.5 628,187 + CCNA_00596 0.66 +0.4 628,192 + CCNA_00596 0.67 -1.8 628,205 - CCNA_00596 0.69 -0.3 628,259 - CCNA_00596 0.80 -1.4 628,267 - CCNA_00596 0.81 -0.9 628,280 + CCNA_00596 0.84 -1.4 628,288 - CCNA_00596 0.85 +0.3 628,290 + CCNA_00596 0.86 -1.3 628,338 - +0.0 628,379 + +0.6 628,390 + -0.1 628,393 - -0.1 628,398 - -0.0 628,407 + -0.0 628,415 - -0.9 628,439 - -0.8 628,439 - +0.4 628,439 - -0.6 628,451 + -0.5 628,451 + +0.3 628,451 + +1.2 628,454 - -0.0 628,459 - +1.2 628,459 - -0.6 628,473 - -1.9 628,476 + -1.6 628,476 + -0.4 628,476 + +0.2 628,476 + +0.3 628,476 + -0.1 628,484 - -0.7 628,498 - -1.2 628,503 + -0.2 628,503 + -1.1 628,503 + +0.3 628,511 + +0.5 628,519 + +0.6 628,528 - +0.5 628,528 - -0.7 628,534 - +0.3 628,534 - +1.8 628,534 - -0.4 628,557 + -0.2 628,600 + -0.4 628,608 - -1.0 628,652 + +0.1 628,672 - -2.1 628,679 - +0.2 628,684 - +0.0 628,690 - +0.2 628,726 - +2.2 628,750 - +1.1 628,814 + +0.0 628,827 - +0.1 628,844 + CCNA_00597 0.10 +0.1 628,878 - CCNA_00597 0.11 +1.0
Or see this region's nucleotide sequence