Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00280

Experiment: PYE with CHIR-090 40 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00278 and CCNA_00279 are separated by 51 nucleotidesCCNA_00279 and CCNA_00280 overlap by 4 nucleotidesCCNA_00280 and CCNA_00281 overlap by 1 nucleotides CCNA_00278: CCNA_00278 - glutaminase, at 291,339 to 292,259 _00278 CCNA_00279: CCNA_00279 - NAD(P)H-quinone reductase, at 292,311 to 292,901 _00279 CCNA_00280: CCNA_00280 - tRNA pseudouridine synthase A, at 292,898 to 293,641 _00280 CCNA_00281: CCNA_00281 - methionyl-tRNA formyltransferase, at 293,641 to 294,567 _00281 Position (kb) 292 293 294Strain fitness (log2 ratio) -1 0 1at 292.052 kb on - strand, within CCNA_00278at 292.052 kb on - strand, within CCNA_00278at 292.052 kb on - strand, within CCNA_00278at 292.059 kb on + strand, within CCNA_00278at 292.059 kb on + strand, within CCNA_00278at 292.067 kb on - strand, within CCNA_00278at 292.095 kb on + strand, within CCNA_00278at 292.095 kb on + strand, within CCNA_00278at 292.147 kb on - strand, within CCNA_00278at 292.251 kb on + strandat 292.264 kb on + strandat 292.307 kb on + strandat 292.315 kb on - strandat 292.326 kb on - strandat 292.352 kb on + strandat 292.383 kb on - strand, within CCNA_00279at 292.394 kb on + strand, within CCNA_00279at 292.397 kb on - strand, within CCNA_00279at 292.408 kb on + strand, within CCNA_00279at 292.558 kb on - strand, within CCNA_00279at 292.560 kb on - strand, within CCNA_00279at 292.598 kb on + strand, within CCNA_00279at 292.598 kb on + strand, within CCNA_00279at 292.598 kb on + strand, within CCNA_00279at 292.598 kb on + strand, within CCNA_00279at 292.598 kb on + strand, within CCNA_00279at 292.603 kb on + strand, within CCNA_00279at 292.606 kb on - strand, within CCNA_00279at 292.606 kb on - strand, within CCNA_00279at 292.606 kb on - strand, within CCNA_00279at 292.609 kb on + strand, within CCNA_00279at 292.627 kb on - strand, within CCNA_00279at 292.654 kb on - strand, within CCNA_00279at 292.698 kb on + strand, within CCNA_00279at 292.698 kb on + strand, within CCNA_00279at 292.698 kb on + strand, within CCNA_00279at 292.703 kb on + strand, within CCNA_00279at 292.706 kb on - strand, within CCNA_00279at 292.706 kb on - strand, within CCNA_00279at 292.706 kb on - strand, within CCNA_00279at 292.706 kb on - strand, within CCNA_00279at 292.710 kb on + strand, within CCNA_00279at 292.711 kb on - strand, within CCNA_00279at 292.718 kb on - strand, within CCNA_00279at 292.785 kb on - strand, within CCNA_00279at 292.785 kb on - strand, within CCNA_00279at 292.800 kb on - strand, within CCNA_00279at 292.815 kb on + strand, within CCNA_00279at 292.825 kb on + strand, within CCNA_00279at 292.833 kb on - strand, within CCNA_00279at 292.879 kb on + strandat 292.879 kb on + strandat 292.879 kb on + strandat 292.887 kb on - strandat 292.887 kb on - strandat 292.887 kb on - strandat 292.968 kb on + strandat 292.974 kb on - strand, within CCNA_00280at 292.981 kb on - strand, within CCNA_00280at 293.030 kb on - strand, within CCNA_00280at 293.030 kb on - strand, within CCNA_00280at 293.145 kb on - strand, within CCNA_00280at 293.199 kb on - strand, within CCNA_00280at 293.206 kb on + strand, within CCNA_00280at 293.216 kb on + strand, within CCNA_00280at 293.216 kb on + strand, within CCNA_00280at 293.275 kb on - strand, within CCNA_00280at 293.280 kb on - strand, within CCNA_00280at 293.304 kb on - strand, within CCNA_00280at 293.307 kb on + strand, within CCNA_00280at 293.325 kb on + strand, within CCNA_00280at 293.333 kb on - strand, within CCNA_00280at 293.340 kb on + strand, within CCNA_00280at 293.340 kb on + strand, within CCNA_00280at 293.340 kb on + strand, within CCNA_00280at 293.340 kb on + strand, within CCNA_00280at 293.390 kb on + strand, within CCNA_00280at 293.398 kb on - strand, within CCNA_00280at 293.403 kb on - strand, within CCNA_00280at 293.428 kb on - strand, within CCNA_00280at 293.428 kb on - strand, within CCNA_00280at 293.430 kb on + strand, within CCNA_00280at 293.443 kb on - strand, within CCNA_00280at 293.558 kb on - strand, within CCNA_00280at 293.583 kb on + strandat 293.595 kb on + strandat 293.617 kb on - strandat 293.652 kb on - strandat 293.711 kb on + strandat 294.447 kb on + strand, within CCNA_00281at 294.609 kb on + strandat 294.617 kb on - strandat 294.619 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL
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292,052 - CCNA_00278 0.77 +0.6
292,052 - CCNA_00278 0.77 -0.3
292,052 - CCNA_00278 0.77 -1.1
292,059 + CCNA_00278 0.78 +0.1
292,059 + CCNA_00278 0.78 +0.1
292,067 - CCNA_00278 0.79 -0.0
292,095 + CCNA_00278 0.82 +0.7
292,095 + CCNA_00278 0.82 -0.7
292,147 - CCNA_00278 0.88 +0.3
292,251 + -0.7
292,264 + +0.3
292,307 + +0.1
292,315 - +0.3
292,326 - +1.4
292,352 + -1.1
292,383 - CCNA_00279 0.12 +0.4
292,394 + CCNA_00279 0.14 -0.5
292,397 - CCNA_00279 0.15 +0.4
292,408 + CCNA_00279 0.16 +0.7
292,558 - CCNA_00279 0.42 -0.6
292,560 - CCNA_00279 0.42 +0.3
292,598 + CCNA_00279 0.49 -0.1
292,598 + CCNA_00279 0.49 -0.6
292,598 + CCNA_00279 0.49 +0.4
292,598 + CCNA_00279 0.49 +0.7
292,598 + CCNA_00279 0.49 +0.8
292,603 + CCNA_00279 0.49 +0.4
292,606 - CCNA_00279 0.50 +0.3
292,606 - CCNA_00279 0.50 -0.4
292,606 - CCNA_00279 0.50 -0.5
292,609 + CCNA_00279 0.50 -0.3
292,627 - CCNA_00279 0.53 -1.3
292,654 - CCNA_00279 0.58 -0.6
292,698 + CCNA_00279 0.65 -0.1
292,698 + CCNA_00279 0.65 +0.3
292,698 + CCNA_00279 0.65 +0.5
292,703 + CCNA_00279 0.66 -0.7
292,706 - CCNA_00279 0.67 +0.3
292,706 - CCNA_00279 0.67 -1.4
292,706 - CCNA_00279 0.67 -0.8
292,706 - CCNA_00279 0.67 -1.0
292,710 + CCNA_00279 0.68 +0.5
292,711 - CCNA_00279 0.68 +0.3
292,718 - CCNA_00279 0.69 +0.2
292,785 - CCNA_00279 0.80 -0.2
292,785 - CCNA_00279 0.80 -0.7
292,800 - CCNA_00279 0.83 +0.3
292,815 + CCNA_00279 0.85 -1.7
292,825 + CCNA_00279 0.87 -0.1
292,833 - CCNA_00279 0.88 -0.6
292,879 + -0.5
292,879 + +0.4
292,879 + -1.3
292,887 - -0.6
292,887 - +0.0
292,887 - +0.5
292,968 + -1.0
292,974 - CCNA_00280 0.10 -0.8
292,981 - CCNA_00280 0.11 +0.3
293,030 - CCNA_00280 0.18 +0.3
293,030 - CCNA_00280 0.18 +0.4
293,145 - CCNA_00280 0.33 -0.4
293,199 - CCNA_00280 0.40 +0.4
293,206 + CCNA_00280 0.41 -0.7
293,216 + CCNA_00280 0.43 -0.6
293,216 + CCNA_00280 0.43 -0.3
293,275 - CCNA_00280 0.51 +1.1
293,280 - CCNA_00280 0.51 -0.1
293,304 - CCNA_00280 0.55 +0.2
293,307 + CCNA_00280 0.55 +0.3
293,325 + CCNA_00280 0.57 -0.2
293,333 - CCNA_00280 0.58 +0.1
293,340 + CCNA_00280 0.59 +0.0
293,340 + CCNA_00280 0.59 +0.1
293,340 + CCNA_00280 0.59 +0.1
293,340 + CCNA_00280 0.59 +0.3
293,390 + CCNA_00280 0.66 -0.9
293,398 - CCNA_00280 0.67 +0.1
293,403 - CCNA_00280 0.68 +0.6
293,428 - CCNA_00280 0.71 -0.4
293,428 - CCNA_00280 0.71 +0.3
293,430 + CCNA_00280 0.72 -0.3
293,443 - CCNA_00280 0.73 +0.2
293,558 - CCNA_00280 0.89 +0.1
293,583 + +0.3
293,595 + -0.2
293,617 - -0.4
293,652 - +0.1
293,711 + +0.7
294,447 + CCNA_00281 0.87 +1.1
294,609 + -0.6
294,617 - -0.3
294,619 + -1.0

Or see this region's nucleotide sequence