Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00261

Experiment: PYE with CHIR-090 40 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00260 and CCNA_00261 are separated by 136 nucleotidesCCNA_00261 and CCNA_00262 are separated by 182 nucleotides CCNA_00260: CCNA_00260 - glutathione S-transferase, at 272,872 to 273,558 _00260 CCNA_00261: CCNA_00261 - ribonucleoside-diphosphate reductase beta chain, at 273,695 to 274,738 _00261 CCNA_00262: CCNA_00262 - ketopantoate reductase panE/ApbA family protein, at 274,921 to 275,793 _00262 Position (kb) 273 274 275Strain fitness (log2 ratio) -2 -1 0 1 2at 272.720 kb on - strandat 272.721 kb on - strandat 272.741 kb on + strandat 272.748 kb on + strandat 272.750 kb on - strandat 272.756 kb on - strandat 272.756 kb on - strandat 272.758 kb on + strandat 272.758 kb on + strandat 272.758 kb on + strandat 272.758 kb on + strandat 272.764 kb on + strandat 272.764 kb on + strandat 272.766 kb on - strandat 272.770 kb on + strandat 272.772 kb on - strandat 272.773 kb on - strandat 272.783 kb on - strandat 272.792 kb on + strandat 272.792 kb on + strandat 272.802 kb on + strandat 272.807 kb on - strandat 272.813 kb on - strandat 272.813 kb on - strandat 272.813 kb on - strandat 272.824 kb on - strandat 272.866 kb on - strandat 272.868 kb on + strandat 272.868 kb on + strandat 272.927 kb on - strandat 272.930 kb on + strandat 272.999 kb on - strand, within CCNA_00260at 273.007 kb on - strand, within CCNA_00260at 273.008 kb on + strand, within CCNA_00260at 273.018 kb on - strand, within CCNA_00260at 273.054 kb on + strand, within CCNA_00260at 273.073 kb on - strand, within CCNA_00260at 273.112 kb on - strand, within CCNA_00260at 273.141 kb on - strand, within CCNA_00260at 273.161 kb on + strand, within CCNA_00260at 273.161 kb on + strand, within CCNA_00260at 273.161 kb on + strand, within CCNA_00260at 273.169 kb on - strand, within CCNA_00260at 273.169 kb on - strand, within CCNA_00260at 273.169 kb on - strand, within CCNA_00260at 273.194 kb on - strand, within CCNA_00260at 273.209 kb on + strand, within CCNA_00260at 273.209 kb on - strand, within CCNA_00260at 273.216 kb on - strand, within CCNA_00260at 273.217 kb on - strand, within CCNA_00260at 273.221 kb on + strand, within CCNA_00260at 273.221 kb on + strand, within CCNA_00260at 273.229 kb on - strand, within CCNA_00260at 273.229 kb on - strand, within CCNA_00260at 273.250 kb on + strand, within CCNA_00260at 273.257 kb on - strand, within CCNA_00260at 273.274 kb on - strand, within CCNA_00260at 273.304 kb on + strand, within CCNA_00260at 273.304 kb on + strand, within CCNA_00260at 273.326 kb on - strand, within CCNA_00260at 273.326 kb on - strand, within CCNA_00260at 273.348 kb on - strand, within CCNA_00260at 273.348 kb on - strand, within CCNA_00260at 273.367 kb on + strand, within CCNA_00260at 273.373 kb on + strand, within CCNA_00260at 273.385 kb on + strand, within CCNA_00260at 273.390 kb on + strand, within CCNA_00260at 273.393 kb on - strand, within CCNA_00260at 273.400 kb on - strand, within CCNA_00260at 273.420 kb on + strand, within CCNA_00260at 273.425 kb on + strand, within CCNA_00260at 273.425 kb on + strand, within CCNA_00260at 273.425 kb on + strand, within CCNA_00260at 273.425 kb on + strand, within CCNA_00260at 273.425 kb on + strand, within CCNA_00260at 273.425 kb on + strand, within CCNA_00260at 273.433 kb on - strand, within CCNA_00260at 273.433 kb on - strand, within CCNA_00260at 273.433 kb on - strand, within CCNA_00260at 273.433 kb on - strand, within CCNA_00260at 273.433 kb on - strand, within CCNA_00260at 273.433 kb on - strand, within CCNA_00260at 273.433 kb on - strand, within CCNA_00260at 273.433 kb on - strand, within CCNA_00260at 273.433 kb on - strand, within CCNA_00260at 273.433 kb on - strand, within CCNA_00260at 273.454 kb on + strand, within CCNA_00260at 273.454 kb on + strand, within CCNA_00260at 273.461 kb on + strand, within CCNA_00260at 273.462 kb on - strand, within CCNA_00260at 273.481 kb on - strand, within CCNA_00260at 273.486 kb on - strand, within CCNA_00260at 273.525 kb on + strandat 273.533 kb on + strandat 273.551 kb on - strandat 273.564 kb on + strandat 273.572 kb on - strandat 273.656 kb on + strandat 273.662 kb on - strandat 274.716 kb on - strandat 274.772 kb on - strandat 274.787 kb on + strandat 274.799 kb on + strandat 274.821 kb on - strandat 274.821 kb on - strandat 274.821 kb on - strandat 274.845 kb on + strandat 274.853 kb on - strandat 274.867 kb on - strandat 274.869 kb on + strandat 274.875 kb on + strandat 274.884 kb on - strandat 274.897 kb on - strandat 274.912 kb on + strandat 274.915 kb on - strandat 274.926 kb on - strandat 274.928 kb on + strandat 274.981 kb on + strandat 274.996 kb on - strandat 275.006 kb on - strandat 275.023 kb on + strand, within CCNA_00262at 275.025 kb on + strand, within CCNA_00262at 275.025 kb on + strand, within CCNA_00262at 275.033 kb on - strand, within CCNA_00262at 275.117 kb on + strand, within CCNA_00262at 275.138 kb on - strand, within CCNA_00262at 275.153 kb on - strand, within CCNA_00262at 275.155 kb on + strand, within CCNA_00262at 275.155 kb on + strand, within CCNA_00262at 275.155 kb on + strand, within CCNA_00262at 275.162 kb on - strand, within CCNA_00262at 275.163 kb on - strand, within CCNA_00262at 275.193 kb on - strand, within CCNA_00262at 275.211 kb on + strand, within CCNA_00262at 275.216 kb on + strand, within CCNA_00262at 275.283 kb on - strand, within CCNA_00262at 275.343 kb on + strand, within CCNA_00262at 275.344 kb on + strand, within CCNA_00262at 275.344 kb on - strand, within CCNA_00262at 275.348 kb on + strand, within CCNA_00262at 275.362 kb on + strand, within CCNA_00262at 275.387 kb on + strand, within CCNA_00262at 275.388 kb on - strand, within CCNA_00262at 275.449 kb on + strand, within CCNA_00262at 275.449 kb on + strand, within CCNA_00262at 275.449 kb on + strand, within CCNA_00262at 275.457 kb on - strand, within CCNA_00262at 275.457 kb on - strand, within CCNA_00262at 275.482 kb on - strand, within CCNA_00262at 275.512 kb on - strand, within CCNA_00262at 275.512 kb on - strand, within CCNA_00262at 275.512 kb on - strand, within CCNA_00262at 275.521 kb on + strand, within CCNA_00262at 275.524 kb on - strand, within CCNA_00262at 275.526 kb on + strand, within CCNA_00262at 275.542 kb on + strand, within CCNA_00262at 275.615 kb on - strand, within CCNA_00262at 275.694 kb on - strand, within CCNA_00262

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL
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272,720 - +0.2
272,721 - -0.9
272,741 + -0.8
272,748 + -0.0
272,750 - -0.5
272,756 - -0.5
272,756 - -0.0
272,758 + -0.2
272,758 + -0.0
272,758 + -0.1
272,758 + +0.0
272,764 + -0.8
272,764 + +0.5
272,766 - +1.9
272,770 + -0.0
272,772 - -2.5
272,773 - +0.2
272,783 - +0.1
272,792 + -1.0
272,792 + -1.3
272,802 + -0.4
272,807 - -0.1
272,813 - +1.3
272,813 - -0.7
272,813 - +0.3
272,824 - -0.4
272,866 - -0.2
272,868 + -0.9
272,868 + -0.8
272,927 - -0.1
272,930 + +0.2
272,999 - CCNA_00260 0.18 +1.2
273,007 - CCNA_00260 0.20 -0.7
273,008 + CCNA_00260 0.20 -1.2
273,018 - CCNA_00260 0.21 -0.1
273,054 + CCNA_00260 0.26 -0.0
273,073 - CCNA_00260 0.29 -0.3
273,112 - CCNA_00260 0.35 +0.5
273,141 - CCNA_00260 0.39 -0.7
273,161 + CCNA_00260 0.42 +1.3
273,161 + CCNA_00260 0.42 -1.1
273,161 + CCNA_00260 0.42 -1.1
273,169 - CCNA_00260 0.43 +0.4
273,169 - CCNA_00260 0.43 +0.4
273,169 - CCNA_00260 0.43 +1.0
273,194 - CCNA_00260 0.47 +0.3
273,209 + CCNA_00260 0.49 +0.3
273,209 - CCNA_00260 0.49 -1.1
273,216 - CCNA_00260 0.50 -0.1
273,217 - CCNA_00260 0.50 -0.4
273,221 + CCNA_00260 0.51 +0.1
273,221 + CCNA_00260 0.51 +1.2
273,229 - CCNA_00260 0.52 -0.5
273,229 - CCNA_00260 0.52 +2.7
273,250 + CCNA_00260 0.55 +1.8
273,257 - CCNA_00260 0.56 +0.4
273,274 - CCNA_00260 0.59 +0.7
273,304 + CCNA_00260 0.63 -0.7
273,304 + CCNA_00260 0.63 -0.7
273,326 - CCNA_00260 0.66 -0.4
273,326 - CCNA_00260 0.66 +0.1
273,348 - CCNA_00260 0.69 -0.4
273,348 - CCNA_00260 0.69 -0.5
273,367 + CCNA_00260 0.72 -1.5
273,373 + CCNA_00260 0.73 -0.1
273,385 + CCNA_00260 0.75 -0.3
273,390 + CCNA_00260 0.75 -0.6
273,393 - CCNA_00260 0.76 +0.4
273,400 - CCNA_00260 0.77 -0.1
273,420 + CCNA_00260 0.80 +0.2
273,425 + CCNA_00260 0.80 +0.7
273,425 + CCNA_00260 0.80 -0.1
273,425 + CCNA_00260 0.80 +0.1
273,425 + CCNA_00260 0.80 -0.3
273,425 + CCNA_00260 0.80 -1.2
273,425 + CCNA_00260 0.80 -0.0
273,433 - CCNA_00260 0.82 +0.7
273,433 - CCNA_00260 0.82 -0.3
273,433 - CCNA_00260 0.82 -0.4
273,433 - CCNA_00260 0.82 +0.0
273,433 - CCNA_00260 0.82 -0.6
273,433 - CCNA_00260 0.82 -1.1
273,433 - CCNA_00260 0.82 -0.1
273,433 - CCNA_00260 0.82 +1.6
273,433 - CCNA_00260 0.82 +1.1
273,433 - CCNA_00260 0.82 -0.6
273,454 + CCNA_00260 0.85 -0.9
273,454 + CCNA_00260 0.85 -0.1
273,461 + CCNA_00260 0.86 -1.3
273,462 - CCNA_00260 0.86 +0.1
273,481 - CCNA_00260 0.89 -0.8
273,486 - CCNA_00260 0.89 -1.3
273,525 + -1.0
273,533 + -0.2
273,551 - +0.6
273,564 + -1.3
273,572 - +1.1
273,656 + -0.9
273,662 - -0.1
274,716 - -1.3
274,772 - +1.7
274,787 + -0.0
274,799 + -0.5
274,821 - +1.1
274,821 - -1.4
274,821 - -1.1
274,845 + +0.4
274,853 - +0.2
274,867 - -0.0
274,869 + +0.2
274,875 + +0.3
274,884 - +0.3
274,897 - +0.2
274,912 + +0.1
274,915 - -0.3
274,926 - +0.5
274,928 + +0.6
274,981 + -1.7
274,996 - +0.5
275,006 - +1.3
275,023 + CCNA_00262 0.12 +0.5
275,025 + CCNA_00262 0.12 +0.2
275,025 + CCNA_00262 0.12 -0.1
275,033 - CCNA_00262 0.13 -0.2
275,117 + CCNA_00262 0.22 -0.5
275,138 - CCNA_00262 0.25 +0.3
275,153 - CCNA_00262 0.27 +0.3
275,155 + CCNA_00262 0.27 -0.0
275,155 + CCNA_00262 0.27 -0.1
275,155 + CCNA_00262 0.27 +0.6
275,162 - CCNA_00262 0.28 -2.0
275,163 - CCNA_00262 0.28 +0.1
275,193 - CCNA_00262 0.31 +0.4
275,211 + CCNA_00262 0.33 +0.1
275,216 + CCNA_00262 0.34 -1.7
275,283 - CCNA_00262 0.41 +0.4
275,343 + CCNA_00262 0.48 -0.3
275,344 + CCNA_00262 0.48 +0.0
275,344 - CCNA_00262 0.48 +0.2
275,348 + CCNA_00262 0.49 +1.1
275,362 + CCNA_00262 0.51 +0.4
275,387 + CCNA_00262 0.53 +0.2
275,388 - CCNA_00262 0.53 -0.4
275,449 + CCNA_00262 0.60 +0.4
275,449 + CCNA_00262 0.60 +0.5
275,449 + CCNA_00262 0.60 +1.0
275,457 - CCNA_00262 0.61 -1.4
275,457 - CCNA_00262 0.61 +0.1
275,482 - CCNA_00262 0.64 -0.5
275,512 - CCNA_00262 0.68 -0.3
275,512 - CCNA_00262 0.68 -0.1
275,512 - CCNA_00262 0.68 +0.2
275,521 + CCNA_00262 0.69 +0.3
275,524 - CCNA_00262 0.69 -2.0
275,526 + CCNA_00262 0.69 -0.4
275,542 + CCNA_00262 0.71 +0.1
275,615 - CCNA_00262 0.79 +1.2
275,694 - CCNA_00262 0.89 -0.3

Or see this region's nucleotide sequence