Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00189

Experiment: PYE with CHIR-090 40 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00188 and CCNA_00189 are separated by 143 nucleotidesCCNA_00189 and CCNA_00190 are separated by 1 nucleotidesCCNA_00190 and CCNA_00191 are separated by 125 nucleotides CCNA_00188: CCNA_00188 - ABC transporter ATP-binding protein, at 202,763 to 203,725 _00188 CCNA_00189: CCNA_00189 - zinc-finger domain protein, at 203,869 to 204,135 _00189 CCNA_00190: CCNA_00190 - acyl-CoA hydrolase, at 204,137 to 204,571 _00190 CCNA_00191: CCNA_00191 - N-acetylglutamate synthase domain protein, at 204,697 to 205,173 _00191 Position (kb) 203 204 205Strain fitness (log2 ratio) -2 -1 0 1 2at 202.899 kb on + strand, within CCNA_00188at 202.899 kb on + strand, within CCNA_00188at 202.899 kb on + strand, within CCNA_00188at 202.899 kb on + strand, within CCNA_00188at 202.902 kb on - strand, within CCNA_00188at 202.904 kb on + strand, within CCNA_00188at 202.904 kb on + strand, within CCNA_00188at 202.904 kb on + strand, within CCNA_00188at 202.907 kb on - strand, within CCNA_00188at 202.907 kb on - strand, within CCNA_00188at 202.907 kb on - strand, within CCNA_00188at 202.921 kb on + strand, within CCNA_00188at 202.941 kb on + strand, within CCNA_00188at 202.959 kb on - strand, within CCNA_00188at 202.967 kb on + strand, within CCNA_00188at 202.967 kb on + strand, within CCNA_00188at 202.967 kb on + strand, within CCNA_00188at 202.975 kb on - strand, within CCNA_00188at 202.975 kb on - strand, within CCNA_00188at 202.994 kb on + strand, within CCNA_00188at 203.033 kb on + strand, within CCNA_00188at 203.053 kb on + strand, within CCNA_00188at 203.061 kb on - strand, within CCNA_00188at 203.068 kb on - strand, within CCNA_00188at 203.104 kb on + strand, within CCNA_00188at 203.105 kb on + strand, within CCNA_00188at 203.106 kb on + strand, within CCNA_00188at 203.113 kb on - strand, within CCNA_00188at 203.113 kb on - strand, within CCNA_00188at 203.197 kb on + strand, within CCNA_00188at 203.205 kb on - strand, within CCNA_00188at 203.277 kb on - strand, within CCNA_00188at 203.332 kb on + strand, within CCNA_00188at 203.340 kb on - strand, within CCNA_00188at 203.348 kb on - strand, within CCNA_00188at 203.370 kb on + strand, within CCNA_00188at 203.378 kb on - strand, within CCNA_00188at 203.396 kb on - strand, within CCNA_00188at 203.427 kb on - strand, within CCNA_00188at 203.451 kb on - strand, within CCNA_00188at 203.460 kb on - strand, within CCNA_00188at 203.460 kb on - strand, within CCNA_00188at 203.510 kb on + strand, within CCNA_00188at 203.530 kb on - strand, within CCNA_00188at 203.631 kb on + strandat 203.639 kb on - strandat 203.644 kb on - strandat 203.669 kb on - strandat 203.672 kb on + strandat 203.679 kb on + strandat 203.679 kb on + strandat 203.684 kb on + strandat 203.687 kb on - strandat 203.687 kb on - strandat 203.687 kb on - strandat 203.687 kb on - strandat 203.687 kb on - strandat 203.697 kb on - strandat 203.731 kb on + strandat 203.731 kb on + strandat 203.739 kb on - strandat 203.739 kb on - strandat 203.772 kb on + strandat 203.772 kb on + strandat 203.775 kb on - strandat 203.810 kb on + strandat 203.818 kb on - strandat 203.818 kb on - strandat 203.818 kb on - strandat 203.839 kb on - strandat 203.927 kb on - strand, within CCNA_00189at 204.008 kb on + strand, within CCNA_00189at 204.016 kb on - strand, within CCNA_00189at 204.016 kb on - strand, within CCNA_00189at 204.016 kb on - strand, within CCNA_00189at 204.016 kb on - strand, within CCNA_00189at 204.094 kb on + strand, within CCNA_00189at 204.389 kb on + strand, within CCNA_00190at 204.392 kb on - strand, within CCNA_00190at 204.452 kb on - strand, within CCNA_00190at 204.469 kb on - strand, within CCNA_00190at 204.504 kb on - strand, within CCNA_00190at 204.526 kb on - strand, within CCNA_00190at 204.565 kb on + strandat 204.579 kb on - strandat 204.581 kb on + strandat 204.668 kb on + strandat 204.693 kb on - strandat 204.721 kb on - strandat 204.740 kb on - strandat 204.761 kb on - strand, within CCNA_00191at 204.777 kb on + strand, within CCNA_00191at 204.800 kb on - strand, within CCNA_00191at 204.844 kb on - strand, within CCNA_00191at 204.844 kb on - strand, within CCNA_00191at 204.844 kb on - strand, within CCNA_00191at 204.896 kb on + strand, within CCNA_00191at 204.906 kb on + strand, within CCNA_00191at 204.914 kb on - strand, within CCNA_00191at 204.956 kb on - strand, within CCNA_00191at 204.956 kb on - strand, within CCNA_00191at 204.967 kb on + strand, within CCNA_00191at 204.976 kb on - strand, within CCNA_00191at 204.985 kb on + strand, within CCNA_00191at 205.036 kb on + strand, within CCNA_00191at 205.038 kb on - strand, within CCNA_00191at 205.039 kb on + strand, within CCNA_00191at 205.047 kb on + strand, within CCNA_00191at 205.089 kb on + strand, within CCNA_00191

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL
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202,899 + CCNA_00188 0.14 +0.7
202,899 + CCNA_00188 0.14 -0.4
202,899 + CCNA_00188 0.14 -1.6
202,899 + CCNA_00188 0.14 -0.5
202,902 - CCNA_00188 0.14 -0.3
202,904 + CCNA_00188 0.15 -0.4
202,904 + CCNA_00188 0.15 -0.3
202,904 + CCNA_00188 0.15 -0.4
202,907 - CCNA_00188 0.15 +0.0
202,907 - CCNA_00188 0.15 -0.5
202,907 - CCNA_00188 0.15 +0.0
202,921 + CCNA_00188 0.16 -0.5
202,941 + CCNA_00188 0.18 -0.7
202,959 - CCNA_00188 0.20 -0.3
202,967 + CCNA_00188 0.21 +0.1
202,967 + CCNA_00188 0.21 +0.5
202,967 + CCNA_00188 0.21 -1.0
202,975 - CCNA_00188 0.22 +0.2
202,975 - CCNA_00188 0.22 -0.4
202,994 + CCNA_00188 0.24 -1.5
203,033 + CCNA_00188 0.28 -0.4
203,053 + CCNA_00188 0.30 -1.0
203,061 - CCNA_00188 0.31 +0.2
203,068 - CCNA_00188 0.32 +0.3
203,104 + CCNA_00188 0.35 +0.0
203,105 + CCNA_00188 0.36 -0.2
203,106 + CCNA_00188 0.36 +0.3
203,113 - CCNA_00188 0.36 +0.1
203,113 - CCNA_00188 0.36 +0.8
203,197 + CCNA_00188 0.45 -0.1
203,205 - CCNA_00188 0.46 +0.5
203,277 - CCNA_00188 0.53 +0.2
203,332 + CCNA_00188 0.59 -0.1
203,340 - CCNA_00188 0.60 -0.1
203,348 - CCNA_00188 0.61 +0.3
203,370 + CCNA_00188 0.63 -0.0
203,378 - CCNA_00188 0.64 +0.2
203,396 - CCNA_00188 0.66 -0.2
203,427 - CCNA_00188 0.69 +0.3
203,451 - CCNA_00188 0.71 -0.1
203,460 - CCNA_00188 0.72 +0.1
203,460 - CCNA_00188 0.72 +0.5
203,510 + CCNA_00188 0.78 -0.6
203,530 - CCNA_00188 0.80 +0.1
203,631 + -0.6
203,639 - +0.1
203,644 - +0.2
203,669 - +0.0
203,672 + -0.0
203,679 + +0.4
203,679 + -0.2
203,684 + +0.1
203,687 - -0.7
203,687 - -0.1
203,687 - +0.9
203,687 - +0.5
203,687 - +1.8
203,697 - +0.3
203,731 + +0.3
203,731 + +0.5
203,739 - +0.0
203,739 - -0.0
203,772 + -0.2
203,772 + -0.8
203,775 - +0.7
203,810 + +1.2
203,818 - +0.7
203,818 - +0.2
203,818 - +0.7
203,839 - -0.3
203,927 - CCNA_00189 0.22 -0.9
204,008 + CCNA_00189 0.52 +0.2
204,016 - CCNA_00189 0.55 -0.7
204,016 - CCNA_00189 0.55 -0.5
204,016 - CCNA_00189 0.55 -1.0
204,016 - CCNA_00189 0.55 -0.4
204,094 + CCNA_00189 0.84 +0.8
204,389 + CCNA_00190 0.58 +0.3
204,392 - CCNA_00190 0.59 -0.5
204,452 - CCNA_00190 0.72 +0.3
204,469 - CCNA_00190 0.76 -0.9
204,504 - CCNA_00190 0.84 -1.1
204,526 - CCNA_00190 0.89 -1.5
204,565 + -0.0
204,579 - +1.3
204,581 + -0.5
204,668 + +0.3
204,693 - -1.3
204,721 - -0.7
204,740 - -0.6
204,761 - CCNA_00191 0.13 -0.3
204,777 + CCNA_00191 0.17 +0.6
204,800 - CCNA_00191 0.22 -0.7
204,844 - CCNA_00191 0.31 +0.2
204,844 - CCNA_00191 0.31 -1.5
204,844 - CCNA_00191 0.31 -0.0
204,896 + CCNA_00191 0.42 -0.0
204,906 + CCNA_00191 0.44 +0.5
204,914 - CCNA_00191 0.45 -2.2
204,956 - CCNA_00191 0.54 +1.6
204,956 - CCNA_00191 0.54 -1.5
204,967 + CCNA_00191 0.57 +0.3
204,976 - CCNA_00191 0.58 -0.2
204,985 + CCNA_00191 0.60 -0.5
205,036 + CCNA_00191 0.71 +0.3
205,038 - CCNA_00191 0.71 -0.1
205,039 + CCNA_00191 0.72 -0.5
205,047 + CCNA_00191 0.73 +0.9
205,089 + CCNA_00191 0.82 -0.1

Or see this region's nucleotide sequence