Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00157

Experiment: PYE with CHIR-090 40 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00155 and CCNA_00156 are separated by 132 nucleotidesCCNA_00156 and CCNA_00157 are separated by 70 nucleotidesCCNA_00157 and CCNA_00158 are separated by 227 nucleotides CCNA_00155: CCNA_00155 - DNA polymerase III, beta chain, at 163,413 to 164,531 _00155 CCNA_00156: CCNA_00156 - ArsR-family transcriptional regulator, at 164,664 to 164,951 _00156 CCNA_00157: CCNA_00157 - glyoxalase family protein, at 165,022 to 165,393 _00157 CCNA_00158: CCNA_00158 - DNA replication and repair protein recF, at 165,621 to 166,784 _00158 Position (kb) 165 166Strain fitness (log2 ratio) -2 -1 0 1 2at 164.525 kb on + strandat 164.612 kb on + strandat 164.612 kb on + strandat 164.619 kb on + strandat 164.619 kb on + strandat 164.619 kb on + strandat 164.645 kb on - strandat 164.683 kb on + strandat 164.690 kb on - strandat 164.690 kb on - strandat 164.694 kb on + strand, within CCNA_00156at 164.696 kb on + strand, within CCNA_00156at 164.696 kb on + strand, within CCNA_00156at 164.702 kb on - strand, within CCNA_00156at 164.703 kb on + strand, within CCNA_00156at 164.703 kb on + strand, within CCNA_00156at 164.704 kb on - strand, within CCNA_00156at 164.711 kb on - strand, within CCNA_00156at 164.711 kb on - strand, within CCNA_00156at 164.712 kb on + strand, within CCNA_00156at 164.725 kb on + strand, within CCNA_00156at 164.730 kb on + strand, within CCNA_00156at 164.730 kb on + strand, within CCNA_00156at 164.730 kb on + strand, within CCNA_00156at 164.738 kb on - strand, within CCNA_00156at 164.738 kb on - strand, within CCNA_00156at 164.738 kb on - strand, within CCNA_00156at 164.781 kb on + strand, within CCNA_00156at 164.788 kb on + strand, within CCNA_00156at 164.793 kb on + strand, within CCNA_00156at 164.796 kb on - strand, within CCNA_00156at 164.801 kb on - strand, within CCNA_00156at 164.803 kb on + strand, within CCNA_00156at 164.816 kb on + strand, within CCNA_00156at 164.816 kb on + strand, within CCNA_00156at 164.868 kb on + strand, within CCNA_00156at 164.868 kb on + strand, within CCNA_00156at 164.868 kb on + strand, within CCNA_00156at 164.868 kb on + strand, within CCNA_00156at 164.868 kb on + strand, within CCNA_00156at 164.876 kb on - strand, within CCNA_00156at 164.876 kb on - strand, within CCNA_00156at 164.876 kb on - strand, within CCNA_00156at 164.912 kb on - strand, within CCNA_00156at 164.926 kb on - strandat 164.958 kb on + strandat 165.018 kb on + strandat 165.026 kb on - strandat 165.036 kb on - strandat 165.036 kb on - strandat 165.069 kb on + strand, within CCNA_00157at 165.077 kb on - strand, within CCNA_00157at 165.080 kb on + strand, within CCNA_00157at 165.091 kb on + strand, within CCNA_00157at 165.091 kb on + strand, within CCNA_00157at 165.099 kb on - strand, within CCNA_00157at 165.183 kb on - strand, within CCNA_00157at 165.243 kb on - strand, within CCNA_00157at 165.270 kb on + strand, within CCNA_00157at 165.278 kb on + strand, within CCNA_00157at 165.297 kb on + strand, within CCNA_00157at 165.303 kb on - strand, within CCNA_00157at 165.321 kb on - strand, within CCNA_00157at 165.330 kb on + strand, within CCNA_00157at 165.332 kb on - strand, within CCNA_00157at 165.362 kb on + strandat 165.363 kb on - strandat 165.377 kb on + strandat 165.385 kb on - strandat 165.466 kb on - strandat 165.506 kb on - strandat 165.506 kb on - strandat 165.532 kb on - strandat 165.532 kb on - strandat 165.533 kb on - strandat 165.546 kb on + strandat 165.559 kb on + strandat 165.559 kb on + strandat 165.582 kb on + strandat 165.582 kb on + strandat 165.582 kb on + strandat 165.582 kb on + strandat 165.582 kb on + strandat 165.582 kb on + strandat 165.590 kb on - strandat 165.603 kb on - strandat 165.642 kb on + strandat 165.643 kb on + strandat 165.667 kb on - strandat 165.703 kb on + strandat 165.703 kb on + strandat 165.705 kb on + strandat 165.711 kb on - strandat 165.735 kb on - strandat 165.746 kb on + strand, within CCNA_00158at 165.746 kb on + strand, within CCNA_00158at 165.754 kb on + strand, within CCNA_00158at 165.762 kb on - strand, within CCNA_00158at 165.772 kb on - strand, within CCNA_00158at 165.775 kb on + strand, within CCNA_00158at 165.777 kb on - strand, within CCNA_00158at 165.790 kb on + strand, within CCNA_00158at 165.800 kb on + strand, within CCNA_00158at 165.842 kb on + strand, within CCNA_00158at 165.842 kb on + strand, within CCNA_00158at 165.842 kb on + strand, within CCNA_00158at 165.842 kb on + strand, within CCNA_00158at 165.842 kb on + strand, within CCNA_00158at 165.842 kb on + strand, within CCNA_00158at 165.842 kb on + strand, within CCNA_00158at 165.842 kb on + strand, within CCNA_00158at 165.850 kb on - strand, within CCNA_00158at 165.869 kb on + strand, within CCNA_00158at 165.900 kb on - strand, within CCNA_00158at 165.909 kb on + strand, within CCNA_00158at 165.909 kb on + strand, within CCNA_00158at 165.917 kb on - strand, within CCNA_00158at 165.917 kb on - strand, within CCNA_00158at 165.922 kb on - strand, within CCNA_00158at 165.934 kb on - strand, within CCNA_00158at 165.934 kb on - strand, within CCNA_00158at 166.227 kb on + strand, within CCNA_00158at 166.227 kb on + strand, within CCNA_00158at 166.227 kb on + strand, within CCNA_00158at 166.235 kb on - strand, within CCNA_00158at 166.241 kb on - strand, within CCNA_00158at 166.262 kb on - strand, within CCNA_00158at 166.268 kb on + strand, within CCNA_00158at 166.292 kb on - strand, within CCNA_00158at 166.320 kb on - strand, within CCNA_00158at 166.335 kb on - strand, within CCNA_00158at 166.352 kb on - strand, within CCNA_00158at 166.383 kb on - strand, within CCNA_00158at 166.383 kb on - strand, within CCNA_00158at 166.393 kb on - strand, within CCNA_00158

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL
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164,525 + +0.6
164,612 + -0.3
164,612 + +1.1
164,619 + -1.3
164,619 + +0.4
164,619 + +0.2
164,645 - -1.0
164,683 + +0.2
164,690 - -0.2
164,690 - +0.1
164,694 + CCNA_00156 0.10 -0.8
164,696 + CCNA_00156 0.11 -0.3
164,696 + CCNA_00156 0.11 -1.4
164,702 - CCNA_00156 0.13 +0.2
164,703 + CCNA_00156 0.14 -1.3
164,703 + CCNA_00156 0.14 +0.3
164,704 - CCNA_00156 0.14 +0.3
164,711 - CCNA_00156 0.16 +0.3
164,711 - CCNA_00156 0.16 -0.9
164,712 + CCNA_00156 0.17 -0.2
164,725 + CCNA_00156 0.21 +1.1
164,730 + CCNA_00156 0.23 +1.4
164,730 + CCNA_00156 0.23 +0.1
164,730 + CCNA_00156 0.23 +0.1
164,738 - CCNA_00156 0.26 +0.1
164,738 - CCNA_00156 0.26 -0.7
164,738 - CCNA_00156 0.26 +0.2
164,781 + CCNA_00156 0.41 +0.6
164,788 + CCNA_00156 0.43 +1.0
164,793 + CCNA_00156 0.45 +0.5
164,796 - CCNA_00156 0.46 +0.3
164,801 - CCNA_00156 0.48 +0.1
164,803 + CCNA_00156 0.48 -1.4
164,816 + CCNA_00156 0.53 -0.9
164,816 + CCNA_00156 0.53 -0.2
164,868 + CCNA_00156 0.71 -0.9
164,868 + CCNA_00156 0.71 +0.4
164,868 + CCNA_00156 0.71 +0.5
164,868 + CCNA_00156 0.71 +0.3
164,868 + CCNA_00156 0.71 -0.8
164,876 - CCNA_00156 0.74 -1.0
164,876 - CCNA_00156 0.74 +0.5
164,876 - CCNA_00156 0.74 -0.2
164,912 - CCNA_00156 0.86 -0.1
164,926 - -1.0
164,958 + -0.0
165,018 + -0.4
165,026 - -1.1
165,036 - +0.1
165,036 - +0.5
165,069 + CCNA_00157 0.13 +0.1
165,077 - CCNA_00157 0.15 -1.2
165,080 + CCNA_00157 0.16 -0.3
165,091 + CCNA_00157 0.19 -0.0
165,091 + CCNA_00157 0.19 +0.2
165,099 - CCNA_00157 0.21 -1.7
165,183 - CCNA_00157 0.43 -1.9
165,243 - CCNA_00157 0.59 -0.8
165,270 + CCNA_00157 0.67 +0.2
165,278 + CCNA_00157 0.69 +0.5
165,297 + CCNA_00157 0.74 +0.5
165,303 - CCNA_00157 0.76 -0.9
165,321 - CCNA_00157 0.80 +0.6
165,330 + CCNA_00157 0.83 -0.2
165,332 - CCNA_00157 0.83 -0.7
165,362 + -0.0
165,363 - +0.7
165,377 + +0.6
165,385 - -1.4
165,466 - +0.5
165,506 - +0.8
165,506 - -0.1
165,532 - +0.6
165,532 - +0.9
165,533 - -1.7
165,546 + -0.2
165,559 + +0.3
165,559 + +0.2
165,582 + +2.2
165,582 + -0.3
165,582 + +0.2
165,582 + -0.2
165,582 + +0.2
165,582 + -0.2
165,590 - +0.4
165,603 - -0.2
165,642 + +0.1
165,643 + -0.0
165,667 - -0.3
165,703 + +0.1
165,703 + +0.4
165,705 + -0.4
165,711 - -0.4
165,735 - -0.5
165,746 + CCNA_00158 0.11 -0.9
165,746 + CCNA_00158 0.11 +1.2
165,754 + CCNA_00158 0.11 -1.5
165,762 - CCNA_00158 0.12 +0.9
165,772 - CCNA_00158 0.13 +0.6
165,775 + CCNA_00158 0.13 +0.3
165,777 - CCNA_00158 0.13 -1.4
165,790 + CCNA_00158 0.15 +0.5
165,800 + CCNA_00158 0.15 +0.1
165,842 + CCNA_00158 0.19 -0.2
165,842 + CCNA_00158 0.19 +0.8
165,842 + CCNA_00158 0.19 -0.5
165,842 + CCNA_00158 0.19 -0.6
165,842 + CCNA_00158 0.19 +0.3
165,842 + CCNA_00158 0.19 -0.7
165,842 + CCNA_00158 0.19 -0.5
165,842 + CCNA_00158 0.19 -0.3
165,850 - CCNA_00158 0.20 -0.8
165,869 + CCNA_00158 0.21 -0.5
165,900 - CCNA_00158 0.24 -0.5
165,909 + CCNA_00158 0.25 +0.1
165,909 + CCNA_00158 0.25 +0.1
165,917 - CCNA_00158 0.25 -0.5
165,917 - CCNA_00158 0.25 -0.1
165,922 - CCNA_00158 0.26 +0.4
165,934 - CCNA_00158 0.27 -0.8
165,934 - CCNA_00158 0.27 +0.3
166,227 + CCNA_00158 0.52 +0.0
166,227 + CCNA_00158 0.52 -0.9
166,227 + CCNA_00158 0.52 -0.4
166,235 - CCNA_00158 0.53 +1.1
166,241 - CCNA_00158 0.53 +0.8
166,262 - CCNA_00158 0.55 -0.6
166,268 + CCNA_00158 0.56 +0.4
166,292 - CCNA_00158 0.58 +0.6
166,320 - CCNA_00158 0.60 -0.7
166,335 - CCNA_00158 0.61 -1.6
166,352 - CCNA_00158 0.63 -0.4
166,383 - CCNA_00158 0.65 -1.0
166,383 - CCNA_00158 0.65 +0.6
166,393 - CCNA_00158 0.66 -0.9

Or see this region's nucleotide sequence