Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00052

Experiment: PYE with CHIR-090 40 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00050 and CCNA_00051 overlap by 4 nucleotidesCCNA_00051 and CCNA_00052 are separated by 8 nucleotidesCCNA_00052 and CCNA_00053 are separated by 37 nucleotidesCCNA_00053 and CCNA_00054 overlap by 4 nucleotides CCNA_00050: CCNA_00050 - apolipoprotein N-acyltransferase, at 52,707 to 54,299 _00050 CCNA_00051: CCNA_00051 - magnesium and cobalt efflux protein CorC, at 54,296 to 55,222 _00051 CCNA_00052: CCNA_00052 - metal-dependent hydrolase/metalloproteinase, at 55,231 to 55,686 _00052 CCNA_00053: CCNA_00053 - phosphate starvation-inducible protein PhoH, at 55,724 to 56,668 _00053 CCNA_00054: CCNA_00054 - tRNA 2-methylthioadenosine synthase, at 56,665 to 58,011 _00054 Position (kb) 55 56Strain fitness (log2 ratio) -2 -1 0 1 2at 54.262 kb on + strandat 54.262 kb on + strandat 54.262 kb on + strandat 54.262 kb on + strandat 54.270 kb on - strandat 54.309 kb on + strandat 54.329 kb on - strandat 54.479 kb on - strand, within CCNA_00051at 54.502 kb on - strand, within CCNA_00051at 54.534 kb on - strand, within CCNA_00051at 54.534 kb on - strand, within CCNA_00051at 54.541 kb on - strand, within CCNA_00051at 54.551 kb on - strand, within CCNA_00051at 54.551 kb on - strand, within CCNA_00051at 54.561 kb on - strand, within CCNA_00051at 54.564 kb on + strand, within CCNA_00051at 54.631 kb on - strand, within CCNA_00051at 54.634 kb on - strand, within CCNA_00051at 54.667 kb on + strand, within CCNA_00051at 54.721 kb on - strand, within CCNA_00051at 54.757 kb on - strand, within CCNA_00051at 54.757 kb on - strand, within CCNA_00051at 54.774 kb on - strand, within CCNA_00051at 54.784 kb on + strand, within CCNA_00051at 54.793 kb on - strand, within CCNA_00051at 54.795 kb on + strand, within CCNA_00051at 54.814 kb on + strand, within CCNA_00051at 54.870 kb on + strand, within CCNA_00051at 54.878 kb on - strand, within CCNA_00051at 54.907 kb on - strand, within CCNA_00051at 55.011 kb on + strand, within CCNA_00051at 55.084 kb on - strand, within CCNA_00051at 55.196 kb on + strandat 55.208 kb on - strandat 55.219 kb on + strandat 55.224 kb on + strandat 55.224 kb on + strandat 55.224 kb on + strandat 55.224 kb on + strandat 55.224 kb on + strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.260 kb on - strandat 55.261 kb on - strandat 55.270 kb on + strandat 55.278 kb on - strand, within CCNA_00052at 55.723 kb on - strandat 55.728 kb on - strandat 55.728 kb on - strandat 55.736 kb on + strandat 55.736 kb on + strandat 55.744 kb on - strandat 55.744 kb on - strandat 55.763 kb on - strandat 55.830 kb on + strand, within CCNA_00053at 55.830 kb on + strand, within CCNA_00053at 55.847 kb on + strand, within CCNA_00053at 55.867 kb on + strand, within CCNA_00053at 55.875 kb on - strand, within CCNA_00053at 55.875 kb on - strand, within CCNA_00053at 55.889 kb on - strand, within CCNA_00053at 55.894 kb on - strand, within CCNA_00053at 55.896 kb on + strand, within CCNA_00053at 55.900 kb on + strand, within CCNA_00053at 55.900 kb on + strand, within CCNA_00053at 55.946 kb on + strand, within CCNA_00053at 55.946 kb on + strand, within CCNA_00053at 55.946 kb on + strand, within CCNA_00053at 55.946 kb on + strand, within CCNA_00053at 55.951 kb on + strand, within CCNA_00053at 55.951 kb on + strand, within CCNA_00053at 55.977 kb on - strand, within CCNA_00053at 55.979 kb on + strand, within CCNA_00053at 55.979 kb on + strand, within CCNA_00053at 55.979 kb on + strand, within CCNA_00053at 55.979 kb on + strand, within CCNA_00053at 55.979 kb on + strand, within CCNA_00053at 55.979 kb on + strand, within CCNA_00053at 55.987 kb on - strand, within CCNA_00053at 55.987 kb on - strand, within CCNA_00053at 55.987 kb on - strand, within CCNA_00053at 55.987 kb on - strand, within CCNA_00053at 55.987 kb on - strand, within CCNA_00053at 55.987 kb on - strand, within CCNA_00053at 56.000 kb on + strand, within CCNA_00053at 56.015 kb on - strand, within CCNA_00053at 56.017 kb on + strand, within CCNA_00053at 56.019 kb on + strand, within CCNA_00053at 56.019 kb on - strand, within CCNA_00053at 56.052 kb on - strand, within CCNA_00053at 56.052 kb on - strand, within CCNA_00053at 56.102 kb on - strand, within CCNA_00053at 56.105 kb on + strand, within CCNA_00053at 56.115 kb on + strand, within CCNA_00053at 56.237 kb on - strand, within CCNA_00053at 56.298 kb on - strand, within CCNA_00053at 56.327 kb on + strand, within CCNA_00053at 56.378 kb on - strand, within CCNA_00053at 56.393 kb on + strand, within CCNA_00053at 56.395 kb on - strand, within CCNA_00053at 56.405 kb on + strand, within CCNA_00053at 56.408 kb on + strand, within CCNA_00053at 56.413 kb on - strand, within CCNA_00053at 56.442 kb on + strand, within CCNA_00053at 56.445 kb on - strand, within CCNA_00053at 56.483 kb on + strand, within CCNA_00053at 56.491 kb on - strand, within CCNA_00053at 56.507 kb on + strand, within CCNA_00053at 56.541 kb on - strand, within CCNA_00053at 56.566 kb on + strand, within CCNA_00053at 56.574 kb on - strandat 56.577 kb on + strandat 56.595 kb on - strandat 56.650 kb on + strandat 56.658 kb on - strandat 56.658 kb on - strandat 56.682 kb on - strandat 56.684 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL
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54,262 + +0.1
54,262 + +1.6
54,262 + +0.1
54,262 + +1.4
54,270 - +0.6
54,309 + +0.3
54,329 - -0.2
54,479 - CCNA_00051 0.20 +0.2
54,502 - CCNA_00051 0.22 +1.1
54,534 - CCNA_00051 0.26 +1.8
54,534 - CCNA_00051 0.26 -0.2
54,541 - CCNA_00051 0.26 -0.5
54,551 - CCNA_00051 0.28 +0.4
54,551 - CCNA_00051 0.28 +0.1
54,561 - CCNA_00051 0.29 +0.7
54,564 + CCNA_00051 0.29 +0.8
54,631 - CCNA_00051 0.36 +0.5
54,634 - CCNA_00051 0.36 +1.6
54,667 + CCNA_00051 0.40 -1.6
54,721 - CCNA_00051 0.46 +1.3
54,757 - CCNA_00051 0.50 +0.3
54,757 - CCNA_00051 0.50 +1.6
54,774 - CCNA_00051 0.52 -0.2
54,784 + CCNA_00051 0.53 -0.8
54,793 - CCNA_00051 0.54 +1.1
54,795 + CCNA_00051 0.54 +0.3
54,814 + CCNA_00051 0.56 +0.6
54,870 + CCNA_00051 0.62 +0.5
54,878 - CCNA_00051 0.63 +0.2
54,907 - CCNA_00051 0.66 +0.5
55,011 + CCNA_00051 0.77 -1.1
55,084 - CCNA_00051 0.85 +0.9
55,196 + +1.0
55,208 - -1.5
55,219 + +1.2
55,224 + -1.5
55,224 + +0.8
55,224 + +0.6
55,224 + -0.3
55,224 + +0.9
55,232 - +1.6
55,232 - +0.3
55,232 - -0.1
55,232 - +0.4
55,232 - +0.9
55,260 - -0.5
55,261 - -0.8
55,270 + -0.8
55,278 - CCNA_00052 0.10 +0.2
55,723 - +0.4
55,728 - +0.2
55,728 - +1.0
55,736 + -0.6
55,736 + -0.7
55,744 - -0.1
55,744 - +0.3
55,763 - -0.8
55,830 + CCNA_00053 0.11 +0.7
55,830 + CCNA_00053 0.11 -0.4
55,847 + CCNA_00053 0.13 +0.3
55,867 + CCNA_00053 0.15 +1.6
55,875 - CCNA_00053 0.16 +0.5
55,875 - CCNA_00053 0.16 +1.0
55,889 - CCNA_00053 0.17 +0.3
55,894 - CCNA_00053 0.18 +1.0
55,896 + CCNA_00053 0.18 -0.4
55,900 + CCNA_00053 0.19 -0.2
55,900 + CCNA_00053 0.19 -0.3
55,946 + CCNA_00053 0.23 -0.3
55,946 + CCNA_00053 0.23 -0.3
55,946 + CCNA_00053 0.23 -0.1
55,946 + CCNA_00053 0.23 +0.6
55,951 + CCNA_00053 0.24 -0.0
55,951 + CCNA_00053 0.24 +0.2
55,977 - CCNA_00053 0.27 +0.1
55,979 + CCNA_00053 0.27 +0.6
55,979 + CCNA_00053 0.27 -0.8
55,979 + CCNA_00053 0.27 -0.4
55,979 + CCNA_00053 0.27 -0.6
55,979 + CCNA_00053 0.27 -0.1
55,979 + CCNA_00053 0.27 -1.1
55,987 - CCNA_00053 0.28 -0.5
55,987 - CCNA_00053 0.28 +0.7
55,987 - CCNA_00053 0.28 +1.4
55,987 - CCNA_00053 0.28 +1.5
55,987 - CCNA_00053 0.28 +0.1
55,987 - CCNA_00053 0.28 -0.1
56,000 + CCNA_00053 0.29 -0.2
56,015 - CCNA_00053 0.31 +0.4
56,017 + CCNA_00053 0.31 -0.4
56,019 + CCNA_00053 0.31 -1.1
56,019 - CCNA_00053 0.31 -0.2
56,052 - CCNA_00053 0.35 +0.2
56,052 - CCNA_00053 0.35 +0.9
56,102 - CCNA_00053 0.40 +1.5
56,105 + CCNA_00053 0.40 -2.4
56,115 + CCNA_00053 0.41 +0.8
56,237 - CCNA_00053 0.54 +0.6
56,298 - CCNA_00053 0.61 +1.4
56,327 + CCNA_00053 0.64 +1.6
56,378 - CCNA_00053 0.69 +1.5
56,393 + CCNA_00053 0.71 +2.0
56,395 - CCNA_00053 0.71 +0.8
56,405 + CCNA_00053 0.72 -0.1
56,408 + CCNA_00053 0.72 +1.0
56,413 - CCNA_00053 0.73 +0.6
56,442 + CCNA_00053 0.76 -0.0
56,445 - CCNA_00053 0.76 -0.3
56,483 + CCNA_00053 0.80 -0.7
56,491 - CCNA_00053 0.81 +0.5
56,507 + CCNA_00053 0.83 -0.8
56,541 - CCNA_00053 0.86 +0.9
56,566 + CCNA_00053 0.89 +0.5
56,574 - -0.6
56,577 + -0.1
56,595 - +0.4
56,650 + +0.5
56,658 - +0.2
56,658 - +0.8
56,682 - -0.2
56,684 + +1.8

Or see this region's nucleotide sequence