Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20735

Experiment: m.b. perchlorate 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20730 and CA264_20735 are separated by 11 nucleotidesCA264_20735 and CA264_20740 are separated by 4 nucleotides CA264_20730: CA264_20730 - hypothetical protein, at 4,213 to 5,331 _20730 CA264_20735: CA264_20735 - hypothetical protein, at 5,343 to 6,662 _20735 CA264_20740: CA264_20740 - hypothetical protein, at 6,667 to 7,920 _20740 Position (kb) 5 6 7Strain fitness (log2 ratio) -2 -1 0 1 2at 4.357 kb on + strand, within CA264_20730at 4.479 kb on - strand, within CA264_20730at 4.479 kb on - strand, within CA264_20730at 4.592 kb on + strand, within CA264_20730at 4.593 kb on - strand, within CA264_20730at 4.593 kb on - strand, within CA264_20730at 4.665 kb on + strand, within CA264_20730at 4.666 kb on - strand, within CA264_20730at 4.666 kb on - strand, within CA264_20730at 4.667 kb on + strand, within CA264_20730at 4.667 kb on + strand, within CA264_20730at 4.668 kb on - strand, within CA264_20730at 4.668 kb on - strand, within CA264_20730at 4.737 kb on - strand, within CA264_20730at 4.856 kb on + strand, within CA264_20730at 4.857 kb on - strand, within CA264_20730at 4.945 kb on + strand, within CA264_20730at 4.945 kb on + strand, within CA264_20730at 4.946 kb on - strand, within CA264_20730at 4.946 kb on - strand, within CA264_20730at 4.946 kb on - strand, within CA264_20730at 4.991 kb on + strand, within CA264_20730at 4.991 kb on + strand, within CA264_20730at 4.991 kb on + strand, within CA264_20730at 4.992 kb on - strand, within CA264_20730at 5.122 kb on + strand, within CA264_20730at 5.122 kb on + strand, within CA264_20730at 5.131 kb on + strand, within CA264_20730at 5.131 kb on + strand, within CA264_20730at 5.132 kb on - strand, within CA264_20730at 5.132 kb on - strand, within CA264_20730at 5.133 kb on + strand, within CA264_20730at 5.134 kb on - strand, within CA264_20730at 5.141 kb on - strand, within CA264_20730at 5.141 kb on - strand, within CA264_20730at 5.171 kb on + strand, within CA264_20730at 5.173 kb on + strand, within CA264_20730at 5.174 kb on - strand, within CA264_20730at 5.174 kb on - strand, within CA264_20730at 5.174 kb on - strand, within CA264_20730at 5.174 kb on - strand, within CA264_20730at 5.191 kb on + strand, within CA264_20730at 5.191 kb on + strand, within CA264_20730at 5.191 kb on + strand, within CA264_20730at 5.308 kb on + strandat 5.310 kb on + strandat 5.352 kb on + strandat 5.352 kb on + strandat 5.353 kb on - strandat 5.353 kb on - strandat 5.424 kb on + strandat 5.424 kb on + strandat 5.425 kb on - strandat 5.542 kb on + strand, within CA264_20735at 5.542 kb on + strand, within CA264_20735at 5.623 kb on - strand, within CA264_20735at 5.647 kb on + strand, within CA264_20735at 5.664 kb on - strand, within CA264_20735at 5.860 kb on + strand, within CA264_20735at 5.860 kb on + strand, within CA264_20735at 5.860 kb on + strand, within CA264_20735at 5.861 kb on - strand, within CA264_20735at 5.875 kb on - strand, within CA264_20735at 5.993 kb on + strand, within CA264_20735at 5.998 kb on - strand, within CA264_20735at 6.004 kb on + strand, within CA264_20735at 6.004 kb on + strand, within CA264_20735at 6.004 kb on + strand, within CA264_20735at 6.004 kb on + strand, within CA264_20735at 6.004 kb on + strand, within CA264_20735at 6.005 kb on - strand, within CA264_20735at 6.013 kb on + strand, within CA264_20735at 6.069 kb on + strand, within CA264_20735at 6.157 kb on - strand, within CA264_20735at 6.227 kb on - strand, within CA264_20735at 6.227 kb on - strand, within CA264_20735at 6.227 kb on - strand, within CA264_20735at 6.238 kb on + strand, within CA264_20735at 6.243 kb on + strand, within CA264_20735at 6.245 kb on + strand, within CA264_20735at 6.245 kb on + strand, within CA264_20735at 6.246 kb on - strand, within CA264_20735at 6.246 kb on - strand, within CA264_20735at 6.247 kb on + strand, within CA264_20735at 6.316 kb on + strand, within CA264_20735at 6.316 kb on + strand, within CA264_20735at 6.317 kb on - strand, within CA264_20735at 6.317 kb on - strand, within CA264_20735at 6.383 kb on + strand, within CA264_20735at 6.402 kb on + strand, within CA264_20735at 6.402 kb on + strand, within CA264_20735at 6.402 kb on + strand, within CA264_20735at 6.402 kb on + strand, within CA264_20735at 6.403 kb on - strand, within CA264_20735at 6.403 kb on - strand, within CA264_20735at 6.403 kb on - strand, within CA264_20735at 6.408 kb on - strand, within CA264_20735at 6.586 kb on - strandat 6.619 kb on - strandat 6.625 kb on - strandat 6.668 kb on + strandat 6.668 kb on + strandat 6.668 kb on + strandat 6.669 kb on - strandat 6.849 kb on + strand, within CA264_20740at 6.850 kb on - strand, within CA264_20740at 6.850 kb on - strand, within CA264_20740at 6.982 kb on - strand, within CA264_20740at 7.001 kb on + strand, within CA264_20740at 7.002 kb on - strand, within CA264_20740at 7.277 kb on - strand, within CA264_20740at 7.306 kb on + strand, within CA264_20740at 7.333 kb on + strand, within CA264_20740at 7.333 kb on + strand, within CA264_20740at 7.334 kb on - strand, within CA264_20740at 7.334 kb on - strand, within CA264_20740at 7.334 kb on - strand, within CA264_20740at 7.407 kb on + strand, within CA264_20740at 7.408 kb on - strand, within CA264_20740at 7.415 kb on + strand, within CA264_20740at 7.415 kb on + strand, within CA264_20740at 7.415 kb on + strand, within CA264_20740at 7.415 kb on + strand, within CA264_20740at 7.415 kb on + strand, within CA264_20740at 7.416 kb on - strand, within CA264_20740at 7.416 kb on - strand, within CA264_20740at 7.416 kb on - strand, within CA264_20740at 7.416 kb on - strand, within CA264_20740at 7.416 kb on - strand, within CA264_20740at 7.416 kb on - strand, within CA264_20740at 7.416 kb on - strand, within CA264_20740at 7.435 kb on - strand, within CA264_20740at 7.469 kb on - strand, within CA264_20740at 7.472 kb on - strand, within CA264_20740at 7.472 kb on - strand, within CA264_20740at 7.505 kb on + strand, within CA264_20740at 7.508 kb on + strand, within CA264_20740at 7.526 kb on + strand, within CA264_20740at 7.625 kb on - strand, within CA264_20740at 7.647 kb on + strand, within CA264_20740at 7.647 kb on + strand, within CA264_20740at 7.648 kb on - strand, within CA264_20740at 7.648 kb on - strand, within CA264_20740at 7.648 kb on - strand, within CA264_20740

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 100 mM
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4,357 + CA264_20730 0.13 -1.1
4,479 - CA264_20730 0.24 -0.5
4,479 - CA264_20730 0.24 +0.7
4,592 + CA264_20730 0.34 +0.7
4,593 - CA264_20730 0.34 -0.6
4,593 - CA264_20730 0.34 -0.3
4,665 + CA264_20730 0.40 +0.1
4,666 - CA264_20730 0.40 +0.0
4,666 - CA264_20730 0.40 +1.1
4,667 + CA264_20730 0.41 -0.3
4,667 + CA264_20730 0.41 -0.3
4,668 - CA264_20730 0.41 -0.2
4,668 - CA264_20730 0.41 +1.3
4,737 - CA264_20730 0.47 +0.2
4,856 + CA264_20730 0.57 -0.2
4,857 - CA264_20730 0.58 -0.3
4,945 + CA264_20730 0.65 -0.0
4,945 + CA264_20730 0.65 -0.6
4,946 - CA264_20730 0.66 +0.4
4,946 - CA264_20730 0.66 +0.2
4,946 - CA264_20730 0.66 +0.5
4,991 + CA264_20730 0.70 -0.4
4,991 + CA264_20730 0.70 -0.1
4,991 + CA264_20730 0.70 +0.1
4,992 - CA264_20730 0.70 -0.1
5,122 + CA264_20730 0.81 -0.0
5,122 + CA264_20730 0.81 +0.5
5,131 + CA264_20730 0.82 -0.1
5,131 + CA264_20730 0.82 +2.4
5,132 - CA264_20730 0.82 -0.2
5,132 - CA264_20730 0.82 +0.8
5,133 + CA264_20730 0.82 -0.4
5,134 - CA264_20730 0.82 +0.4
5,141 - CA264_20730 0.83 -0.9
5,141 - CA264_20730 0.83 +0.1
5,171 + CA264_20730 0.86 +0.9
5,173 + CA264_20730 0.86 +0.2
5,174 - CA264_20730 0.86 -0.5
5,174 - CA264_20730 0.86 -0.6
5,174 - CA264_20730 0.86 +0.3
5,174 - CA264_20730 0.86 -0.9
5,191 + CA264_20730 0.87 +0.8
5,191 + CA264_20730 0.87 +0.6
5,191 + CA264_20730 0.87 +0.0
5,308 + +1.9
5,310 + -0.2
5,352 + +0.1
5,352 + -0.5
5,353 - -2.0
5,353 - +0.6
5,424 + -0.3
5,424 + -0.0
5,425 - +0.2
5,542 + CA264_20735 0.15 +0.1
5,542 + CA264_20735 0.15 -0.1
5,623 - CA264_20735 0.21 +0.4
5,647 + CA264_20735 0.23 +1.1
5,664 - CA264_20735 0.24 -1.5
5,860 + CA264_20735 0.39 -0.4
5,860 + CA264_20735 0.39 -0.1
5,860 + CA264_20735 0.39 -0.4
5,861 - CA264_20735 0.39 +0.2
5,875 - CA264_20735 0.40 +0.5
5,993 + CA264_20735 0.49 +0.6
5,998 - CA264_20735 0.50 +0.0
6,004 + CA264_20735 0.50 -0.8
6,004 + CA264_20735 0.50 -0.0
6,004 + CA264_20735 0.50 +0.2
6,004 + CA264_20735 0.50 -2.0
6,004 + CA264_20735 0.50 +0.6
6,005 - CA264_20735 0.50 +0.1
6,013 + CA264_20735 0.51 +0.6
6,069 + CA264_20735 0.55 -1.0
6,157 - CA264_20735 0.62 -0.5
6,227 - CA264_20735 0.67 +1.4
6,227 - CA264_20735 0.67 -0.6
6,227 - CA264_20735 0.67 -0.4
6,238 + CA264_20735 0.68 +0.0
6,243 + CA264_20735 0.68 -0.2
6,245 + CA264_20735 0.68 +0.9
6,245 + CA264_20735 0.68 +0.5
6,246 - CA264_20735 0.68 +0.2
6,246 - CA264_20735 0.68 +0.2
6,247 + CA264_20735 0.68 -0.6
6,316 + CA264_20735 0.74 +0.6
6,316 + CA264_20735 0.74 +0.6
6,317 - CA264_20735 0.74 +0.5
6,317 - CA264_20735 0.74 +0.1
6,383 + CA264_20735 0.79 +1.2
6,402 + CA264_20735 0.80 -0.7
6,402 + CA264_20735 0.80 -0.0
6,402 + CA264_20735 0.80 +0.2
6,402 + CA264_20735 0.80 +0.4
6,403 - CA264_20735 0.80 -0.3
6,403 - CA264_20735 0.80 +0.6
6,403 - CA264_20735 0.80 +0.9
6,408 - CA264_20735 0.81 -0.0
6,586 - +0.0
6,619 - -0.4
6,625 - +0.3
6,668 + +0.2
6,668 + -0.6
6,668 + -0.2
6,669 - +0.5
6,849 + CA264_20740 0.15 -1.2
6,850 - CA264_20740 0.15 -0.1
6,850 - CA264_20740 0.15 +1.8
6,982 - CA264_20740 0.25 -0.7
7,001 + CA264_20740 0.27 -0.2
7,002 - CA264_20740 0.27 -0.1
7,277 - CA264_20740 0.49 +0.2
7,306 + CA264_20740 0.51 -0.2
7,333 + CA264_20740 0.53 -0.2
7,333 + CA264_20740 0.53 +0.1
7,334 - CA264_20740 0.53 +0.3
7,334 - CA264_20740 0.53 -0.2
7,334 - CA264_20740 0.53 +0.2
7,407 + CA264_20740 0.59 +0.3
7,408 - CA264_20740 0.59 -0.0
7,415 + CA264_20740 0.60 -0.0
7,415 + CA264_20740 0.60 +0.1
7,415 + CA264_20740 0.60 +0.1
7,415 + CA264_20740 0.60 -0.6
7,415 + CA264_20740 0.60 +0.2
7,416 - CA264_20740 0.60 +0.6
7,416 - CA264_20740 0.60 -0.2
7,416 - CA264_20740 0.60 -0.1
7,416 - CA264_20740 0.60 -0.0
7,416 - CA264_20740 0.60 +0.9
7,416 - CA264_20740 0.60 +0.2
7,416 - CA264_20740 0.60 +1.1
7,435 - CA264_20740 0.61 +0.6
7,469 - CA264_20740 0.64 -0.9
7,472 - CA264_20740 0.64 +0.2
7,472 - CA264_20740 0.64 -0.6
7,505 + CA264_20740 0.67 +0.0
7,508 + CA264_20740 0.67 -0.3
7,526 + CA264_20740 0.69 -0.1
7,625 - CA264_20740 0.76 +1.0
7,647 + CA264_20740 0.78 -0.4
7,647 + CA264_20740 0.78 +0.1
7,648 - CA264_20740 0.78 +0.5
7,648 - CA264_20740 0.78 -0.2
7,648 - CA264_20740 0.78 +0.3

Or see this region's nucleotide sequence