Experiment: m.b. perchlorate 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_20075 and CA264_20080 are separated by 527 nucleotides CA264_20080 and CA264_20085 are separated by 123 nucleotides
CA264_20075: CA264_20075 - hypothetical protein, at 4,625,958 to 4,627,481
_20075
CA264_20080: CA264_20080 - T9SS C-terminal target domain-containing protein, at 4,628,009 to 4,628,596
_20080
CA264_20085: CA264_20085 - glycosyltransferase, at 4,628,720 to 4,631,671
_20085
Position (kb)
4628
4629 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4627.121 kb on - strand, within CA264_20075 at 4627.232 kb on - strand, within CA264_20075 at 4627.285 kb on + strand, within CA264_20075 at 4627.286 kb on - strand, within CA264_20075 at 4627.286 kb on - strand, within CA264_20075 at 4627.322 kb on + strand, within CA264_20075 at 4627.323 kb on - strand, within CA264_20075 at 4627.323 kb on - strand, within CA264_20075 at 4627.344 kb on + strand at 4627.363 kb on + strand at 4627.364 kb on - strand at 4627.364 kb on - strand at 4627.462 kb on - strand at 4627.467 kb on + strand at 4627.468 kb on - strand at 4627.469 kb on + strand at 4627.470 kb on - strand at 4627.472 kb on - strand at 4627.508 kb on - strand at 4627.525 kb on + strand at 4627.570 kb on + strand at 4627.618 kb on + strand at 4627.619 kb on - strand at 4627.619 kb on - strand at 4627.620 kb on + strand at 4627.621 kb on - strand at 4627.621 kb on - strand at 4627.723 kb on - strand at 4627.858 kb on - strand at 4627.928 kb on + strand at 4627.949 kb on + strand at 4627.958 kb on + strand at 4627.964 kb on + strand at 4627.964 kb on + strand at 4627.964 kb on + strand at 4627.967 kb on + strand at 4627.968 kb on - strand at 4627.969 kb on + strand at 4627.976 kb on - strand at 4627.976 kb on - strand at 4627.989 kb on + strand at 4628.009 kb on - strand at 4628.029 kb on + strand at 4628.029 kb on + strand at 4628.029 kb on + strand at 4628.030 kb on - strand at 4628.031 kb on + strand at 4628.108 kb on + strand, within CA264_20080 at 4628.108 kb on + strand, within CA264_20080 at 4628.108 kb on + strand, within CA264_20080 at 4628.228 kb on + strand, within CA264_20080 at 4628.228 kb on + strand, within CA264_20080 at 4628.228 kb on + strand, within CA264_20080 at 4628.229 kb on - strand, within CA264_20080 at 4628.229 kb on - strand, within CA264_20080 at 4628.229 kb on - strand, within CA264_20080 at 4628.288 kb on + strand, within CA264_20080 at 4628.288 kb on + strand, within CA264_20080 at 4628.288 kb on + strand, within CA264_20080 at 4628.289 kb on - strand, within CA264_20080 at 4628.300 kb on - strand, within CA264_20080 at 4628.420 kb on + strand, within CA264_20080 at 4628.421 kb on - strand, within CA264_20080 at 4628.421 kb on - strand, within CA264_20080 at 4628.422 kb on + strand, within CA264_20080 at 4628.422 kb on + strand, within CA264_20080 at 4628.446 kb on - strand, within CA264_20080 at 4628.550 kb on + strand at 4628.551 kb on - strand at 4628.602 kb on - strand at 4628.612 kb on - strand at 4628.613 kb on + strand at 4628.613 kb on + strand at 4628.613 kb on + strand at 4628.614 kb on - strand at 4628.614 kb on - strand at 4628.614 kb on - strand at 4628.618 kb on - strand at 4628.618 kb on - strand at 4628.618 kb on - strand at 4628.620 kb on - strand at 4628.654 kb on - strand at 4628.654 kb on - strand at 4628.686 kb on - strand at 4628.689 kb on + strand at 4628.689 kb on + strand at 4628.693 kb on - strand at 4628.713 kb on + strand at 4628.715 kb on + strand at 4628.716 kb on - strand at 4628.716 kb on - strand at 4628.719 kb on + strand at 4628.719 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. perchlorate 100 mM remove 4,627,121 - CA264_20075 0.76 -0.3 4,627,232 - CA264_20075 0.84 -0.3 4,627,285 + CA264_20075 0.87 +0.4 4,627,286 - CA264_20075 0.87 +0.9 4,627,286 - CA264_20075 0.87 +0.2 4,627,322 + CA264_20075 0.90 +0.6 4,627,323 - CA264_20075 0.90 -0.2 4,627,323 - CA264_20075 0.90 +0.1 4,627,344 + +0.0 4,627,363 + +0.3 4,627,364 - -0.6 4,627,364 - +0.3 4,627,462 - +0.6 4,627,467 + +0.3 4,627,468 - -0.3 4,627,469 + +0.3 4,627,470 - -0.2 4,627,472 - -0.3 4,627,508 - -0.3 4,627,525 + +0.7 4,627,570 + -0.2 4,627,618 + +0.4 4,627,619 - +0.3 4,627,619 - +1.0 4,627,620 + +0.7 4,627,621 - +0.2 4,627,621 - -1.3 4,627,723 - -0.2 4,627,858 - -0.1 4,627,928 + -0.5 4,627,949 + +0.4 4,627,958 + +0.6 4,627,964 + +0.2 4,627,964 + +0.4 4,627,964 + +0.6 4,627,967 + +0.3 4,627,968 - +0.3 4,627,969 + -1.7 4,627,976 - -0.1 4,627,976 - -0.2 4,627,989 + +0.4 4,628,009 - -0.3 4,628,029 + +1.1 4,628,029 + -0.7 4,628,029 + -0.1 4,628,030 - -0.4 4,628,031 + -0.4 4,628,108 + CA264_20080 0.17 -1.1 4,628,108 + CA264_20080 0.17 -0.9 4,628,108 + CA264_20080 0.17 -0.7 4,628,228 + CA264_20080 0.37 -1.8 4,628,228 + CA264_20080 0.37 -0.9 4,628,228 + CA264_20080 0.37 +0.0 4,628,229 - CA264_20080 0.37 -0.7 4,628,229 - CA264_20080 0.37 -0.9 4,628,229 - CA264_20080 0.37 +0.2 4,628,288 + CA264_20080 0.47 -1.2 4,628,288 + CA264_20080 0.47 -1.6 4,628,288 + CA264_20080 0.47 -0.8 4,628,289 - CA264_20080 0.48 -0.9 4,628,300 - CA264_20080 0.49 -2.5 4,628,420 + CA264_20080 0.70 -0.0 4,628,421 - CA264_20080 0.70 -0.8 4,628,421 - CA264_20080 0.70 +0.1 4,628,422 + CA264_20080 0.70 -1.3 4,628,422 + CA264_20080 0.70 +0.5 4,628,446 - CA264_20080 0.74 -0.8 4,628,550 + +1.9 4,628,551 - -1.3 4,628,602 - -0.8 4,628,612 - -0.4 4,628,613 + +0.6 4,628,613 + -0.5 4,628,613 + -0.1 4,628,614 - -1.1 4,628,614 - +0.4 4,628,614 - -0.4 4,628,618 - -0.5 4,628,618 - -0.5 4,628,618 - +1.7 4,628,620 - -0.0 4,628,654 - -0.7 4,628,654 - -0.5 4,628,686 - -0.2 4,628,689 + +0.7 4,628,689 + +0.4 4,628,693 - -1.2 4,628,713 + -0.2 4,628,715 + +0.3 4,628,716 - -0.4 4,628,716 - -0.1 4,628,719 + -0.3 4,628,719 + -0.1
Or see this region's nucleotide sequence