Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18005

Experiment: m.b. perchlorate 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18000 and CA264_18005 are separated by 114 nucleotidesCA264_18005 and CA264_18010 are separated by 349 nucleotides CA264_18000: CA264_18000 - short-chain dehydrogenase, at 4,185,308 to 4,186,096 _18000 CA264_18005: CA264_18005 - 3-hydroxyanthranilate 3,4-dioxygenase, at 4,186,211 to 4,186,735 _18005 CA264_18010: CA264_18010 - 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase, at 4,187,085 to 4,188,122 _18010 Position (kb) 4186 4187Strain fitness (log2 ratio) -2 -1 0 1 2at 4185.218 kb on + strandat 4185.228 kb on + strandat 4185.228 kb on + strandat 4185.243 kb on + strandat 4185.243 kb on + strandat 4185.244 kb on - strandat 4185.247 kb on - strandat 4185.247 kb on - strandat 4185.253 kb on + strandat 4185.336 kb on - strandat 4185.360 kb on + strandat 4185.458 kb on + strand, within CA264_18000at 4185.505 kb on + strand, within CA264_18000at 4185.505 kb on + strand, within CA264_18000at 4185.511 kb on + strand, within CA264_18000at 4185.512 kb on - strand, within CA264_18000at 4185.512 kb on - strand, within CA264_18000at 4185.552 kb on - strand, within CA264_18000at 4185.560 kb on - strand, within CA264_18000at 4185.657 kb on - strand, within CA264_18000at 4185.706 kb on + strand, within CA264_18000at 4185.706 kb on + strand, within CA264_18000at 4185.708 kb on + strand, within CA264_18000at 4185.708 kb on + strand, within CA264_18000at 4185.709 kb on - strand, within CA264_18000at 4185.792 kb on - strand, within CA264_18000at 4185.792 kb on - strand, within CA264_18000at 4185.835 kb on + strand, within CA264_18000at 4185.836 kb on - strand, within CA264_18000at 4185.836 kb on - strand, within CA264_18000at 4185.836 kb on - strand, within CA264_18000at 4185.836 kb on - strand, within CA264_18000at 4185.848 kb on + strand, within CA264_18000at 4185.915 kb on + strand, within CA264_18000at 4185.915 kb on + strand, within CA264_18000at 4185.995 kb on - strand, within CA264_18000at 4186.007 kb on + strand, within CA264_18000at 4186.102 kb on - strandat 4186.158 kb on + strandat 4186.188 kb on - strandat 4186.198 kb on + strandat 4186.198 kb on + strandat 4186.199 kb on - strandat 4186.210 kb on + strandat 4186.210 kb on + strandat 4186.211 kb on - strandat 4186.324 kb on - strand, within CA264_18005at 4186.329 kb on + strand, within CA264_18005at 4186.329 kb on + strand, within CA264_18005at 4186.342 kb on + strand, within CA264_18005at 4186.343 kb on - strand, within CA264_18005at 4186.405 kb on + strand, within CA264_18005at 4186.603 kb on - strand, within CA264_18005at 4186.603 kb on - strand, within CA264_18005at 4186.603 kb on - strand, within CA264_18005at 4186.603 kb on - strand, within CA264_18005at 4186.624 kb on - strand, within CA264_18005at 4186.624 kb on - strand, within CA264_18005at 4186.789 kb on + strandat 4186.790 kb on - strandat 4186.850 kb on - strandat 4186.870 kb on - strandat 4186.870 kb on - strandat 4186.871 kb on + strandat 4186.900 kb on - strandat 4186.919 kb on + strandat 4186.920 kb on - strandat 4186.920 kb on - strandat 4186.920 kb on - strandat 4186.926 kb on + strandat 4186.926 kb on + strandat 4186.953 kb on + strandat 4186.954 kb on - strandat 4186.954 kb on - strandat 4186.963 kb on + strandat 4186.984 kb on - strandat 4186.984 kb on - strandat 4186.986 kb on - strandat 4187.004 kb on - strandat 4187.019 kb on - strandat 4187.021 kb on - strandat 4187.021 kb on - strandat 4187.027 kb on - strandat 4187.041 kb on - strandat 4187.065 kb on + strandat 4187.066 kb on - strandat 4187.098 kb on + strandat 4187.098 kb on + strandat 4187.099 kb on - strandat 4187.099 kb on - strandat 4187.099 kb on - strandat 4187.099 kb on - strandat 4187.099 kb on - strandat 4187.099 kb on - strandat 4187.099 kb on - strandat 4187.099 kb on - strandat 4187.213 kb on + strand, within CA264_18010at 4187.294 kb on - strand, within CA264_18010at 4187.324 kb on + strand, within CA264_18010at 4187.325 kb on - strand, within CA264_18010at 4187.329 kb on - strand, within CA264_18010at 4187.352 kb on + strand, within CA264_18010at 4187.352 kb on + strand, within CA264_18010at 4187.353 kb on - strand, within CA264_18010at 4187.353 kb on - strand, within CA264_18010at 4187.353 kb on - strand, within CA264_18010at 4187.506 kb on + strand, within CA264_18010at 4187.616 kb on - strand, within CA264_18010at 4187.643 kb on + strand, within CA264_18010at 4187.684 kb on + strand, within CA264_18010at 4187.685 kb on - strand, within CA264_18010at 4187.685 kb on - strand, within CA264_18010at 4187.685 kb on - strand, within CA264_18010

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 100 mM
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4,185,218 + -0.4
4,185,228 + +0.4
4,185,228 + -0.5
4,185,243 + -0.5
4,185,243 + -0.0
4,185,244 - +0.6
4,185,247 - +0.2
4,185,247 - +0.7
4,185,253 + -0.1
4,185,336 - +0.1
4,185,360 + -0.3
4,185,458 + CA264_18000 0.19 +0.3
4,185,505 + CA264_18000 0.25 -0.6
4,185,505 + CA264_18000 0.25 +0.2
4,185,511 + CA264_18000 0.26 -1.3
4,185,512 - CA264_18000 0.26 -0.1
4,185,512 - CA264_18000 0.26 -0.4
4,185,552 - CA264_18000 0.31 +0.1
4,185,560 - CA264_18000 0.32 -0.3
4,185,657 - CA264_18000 0.44 +1.3
4,185,706 + CA264_18000 0.50 +0.3
4,185,706 + CA264_18000 0.50 -1.0
4,185,708 + CA264_18000 0.51 +0.3
4,185,708 + CA264_18000 0.51 +0.4
4,185,709 - CA264_18000 0.51 -0.8
4,185,792 - CA264_18000 0.61 -0.5
4,185,792 - CA264_18000 0.61 -0.2
4,185,835 + CA264_18000 0.67 -0.7
4,185,836 - CA264_18000 0.67 +0.9
4,185,836 - CA264_18000 0.67 +0.3
4,185,836 - CA264_18000 0.67 +0.6
4,185,836 - CA264_18000 0.67 +0.2
4,185,848 + CA264_18000 0.68 -1.0
4,185,915 + CA264_18000 0.77 +0.4
4,185,915 + CA264_18000 0.77 -0.1
4,185,995 - CA264_18000 0.87 +0.1
4,186,007 + CA264_18000 0.89 -0.4
4,186,102 - -0.8
4,186,158 + -0.4
4,186,188 - +0.0
4,186,198 + -0.3
4,186,198 + +0.7
4,186,199 - +1.3
4,186,210 + +2.5
4,186,210 + +0.0
4,186,211 - +0.0
4,186,324 - CA264_18005 0.22 -0.9
4,186,329 + CA264_18005 0.22 +0.1
4,186,329 + CA264_18005 0.22 -0.5
4,186,342 + CA264_18005 0.25 +0.4
4,186,343 - CA264_18005 0.25 -0.7
4,186,405 + CA264_18005 0.37 +0.9
4,186,603 - CA264_18005 0.75 -1.0
4,186,603 - CA264_18005 0.75 -0.4
4,186,603 - CA264_18005 0.75 -1.1
4,186,603 - CA264_18005 0.75 -0.5
4,186,624 - CA264_18005 0.79 +1.5
4,186,624 - CA264_18005 0.79 -0.6
4,186,789 + -0.3
4,186,790 - -0.8
4,186,850 - -1.0
4,186,870 - -0.6
4,186,870 - -1.1
4,186,871 + +0.8
4,186,900 - +0.5
4,186,919 + -1.0
4,186,920 - -1.1
4,186,920 - +0.5
4,186,920 - -0.3
4,186,926 + +0.7
4,186,926 + -0.6
4,186,953 + -1.3
4,186,954 - -0.8
4,186,954 - +0.1
4,186,963 + -0.7
4,186,984 - -1.3
4,186,984 - +0.8
4,186,986 - -2.5
4,187,004 - -0.3
4,187,019 - +0.0
4,187,021 - -0.3
4,187,021 - -0.7
4,187,027 - -0.4
4,187,041 - -1.4
4,187,065 + +0.0
4,187,066 - -0.3
4,187,098 + +0.9
4,187,098 + -0.5
4,187,099 - +0.7
4,187,099 - +0.4
4,187,099 - +0.3
4,187,099 - -0.4
4,187,099 - -0.6
4,187,099 - -0.5
4,187,099 - +1.2
4,187,099 - -0.7
4,187,213 + CA264_18010 0.12 +0.2
4,187,294 - CA264_18010 0.20 +1.0
4,187,324 + CA264_18010 0.23 -0.0
4,187,325 - CA264_18010 0.23 -0.8
4,187,329 - CA264_18010 0.24 +0.0
4,187,352 + CA264_18010 0.26 -0.5
4,187,352 + CA264_18010 0.26 -0.2
4,187,353 - CA264_18010 0.26 -0.2
4,187,353 - CA264_18010 0.26 -0.1
4,187,353 - CA264_18010 0.26 -0.6
4,187,506 + CA264_18010 0.41 -0.5
4,187,616 - CA264_18010 0.51 -0.3
4,187,643 + CA264_18010 0.54 -0.1
4,187,684 + CA264_18010 0.58 +0.2
4,187,685 - CA264_18010 0.58 +2.5
4,187,685 - CA264_18010 0.58 +0.2
4,187,685 - CA264_18010 0.58 -0.1

Or see this region's nucleotide sequence