Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15785

Experiment: m.b. perchlorate 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15775 and CA264_15780 overlap by 20 nucleotidesCA264_15780 and CA264_15785 are separated by 30 nucleotidesCA264_15785 and CA264_15790 are separated by 238 nucleotides CA264_15775: CA264_15775 - type III polyketide synthase, at 3,682,811 to 3,683,938 _15775 CA264_15780: CA264_15780 - SAM-dependent methyltransferase, at 3,683,919 to 3,684,620 _15780 CA264_15785: CA264_15785 - hypothetical protein, at 3,684,651 to 3,684,857 _15785 CA264_15790: CA264_15790 - hypothetical protein, at 3,685,096 to 3,685,542 _15790 Position (kb) 3684 3685Strain fitness (log2 ratio) -2 -1 0 1at 3683.674 kb on - strand, within CA264_15775at 3683.706 kb on + strand, within CA264_15775at 3683.707 kb on - strand, within CA264_15775at 3683.707 kb on - strand, within CA264_15775at 3683.707 kb on - strand, within CA264_15775at 3683.882 kb on - strandat 3683.893 kb on + strandat 3683.893 kb on + strandat 3683.894 kb on - strandat 3683.894 kb on - strandat 3683.908 kb on - strandat 3683.908 kb on - strandat 3683.908 kb on - strandat 3683.913 kb on - strandat 3683.924 kb on - strandat 3683.924 kb on - strandat 3684.040 kb on + strand, within CA264_15780at 3684.040 kb on + strand, within CA264_15780at 3684.165 kb on - strand, within CA264_15780at 3684.213 kb on + strand, within CA264_15780at 3684.214 kb on - strand, within CA264_15780at 3684.297 kb on + strand, within CA264_15780at 3684.297 kb on + strand, within CA264_15780at 3684.445 kb on - strand, within CA264_15780at 3684.564 kb on + strandat 3684.564 kb on + strandat 3684.619 kb on - strandat 3684.662 kb on + strandat 3684.662 kb on + strandat 3684.662 kb on + strandat 3684.668 kb on + strandat 3684.716 kb on + strand, within CA264_15785at 3684.717 kb on - strand, within CA264_15785at 3684.761 kb on - strand, within CA264_15785at 3684.965 kb on - strandat 3684.989 kb on - strandat 3685.025 kb on + strandat 3685.025 kb on + strandat 3685.052 kb on + strandat 3685.082 kb on + strandat 3685.096 kb on - strandat 3685.096 kb on - strandat 3685.134 kb on + strandat 3685.135 kb on - strandat 3685.163 kb on + strand, within CA264_15790at 3685.214 kb on - strand, within CA264_15790at 3685.258 kb on + strand, within CA264_15790at 3685.258 kb on + strand, within CA264_15790at 3685.382 kb on + strand, within CA264_15790at 3685.416 kb on + strand, within CA264_15790at 3685.448 kb on - strand, within CA264_15790at 3685.457 kb on + strand, within CA264_15790at 3685.541 kb on - strandat 3685.663 kb on - strandat 3685.667 kb on + strandat 3685.668 kb on - strandat 3685.674 kb on - strandat 3685.674 kb on - strandat 3685.688 kb on - strandat 3685.691 kb on + strandat 3685.691 kb on + strandat 3685.691 kb on + strandat 3685.691 kb on + strandat 3685.692 kb on - strandat 3685.692 kb on - strandat 3685.790 kb on + strandat 3685.790 kb on + strandat 3685.791 kb on - strandat 3685.791 kb on - strandat 3685.791 kb on - strandat 3685.841 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 100 mM
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3,683,674 - CA264_15775 0.77 +0.3
3,683,706 + CA264_15775 0.79 +0.7
3,683,707 - CA264_15775 0.79 +0.3
3,683,707 - CA264_15775 0.79 +0.4
3,683,707 - CA264_15775 0.79 +1.5
3,683,882 - +0.4
3,683,893 + +0.1
3,683,893 + +1.4
3,683,894 - +0.1
3,683,894 - -0.9
3,683,908 - -0.0
3,683,908 - +0.6
3,683,908 - +1.2
3,683,913 - -0.5
3,683,924 - +0.2
3,683,924 - +0.4
3,684,040 + CA264_15780 0.17 +0.5
3,684,040 + CA264_15780 0.17 -0.2
3,684,165 - CA264_15780 0.35 +0.4
3,684,213 + CA264_15780 0.42 +0.4
3,684,214 - CA264_15780 0.42 -0.5
3,684,297 + CA264_15780 0.54 -0.0
3,684,297 + CA264_15780 0.54 -0.3
3,684,445 - CA264_15780 0.75 -0.1
3,684,564 + -1.2
3,684,564 + +0.4
3,684,619 - +0.1
3,684,662 + -0.1
3,684,662 + +0.3
3,684,662 + -0.5
3,684,668 + -0.7
3,684,716 + CA264_15785 0.31 -0.3
3,684,717 - CA264_15785 0.32 -2.0
3,684,761 - CA264_15785 0.53 -0.5
3,684,965 - +0.2
3,684,989 - +1.5
3,685,025 + +0.6
3,685,025 + -0.3
3,685,052 + -0.2
3,685,082 + -0.5
3,685,096 - -0.2
3,685,096 - -0.9
3,685,134 + +0.8
3,685,135 - -0.3
3,685,163 + CA264_15790 0.15 +0.9
3,685,214 - CA264_15790 0.26 -0.8
3,685,258 + CA264_15790 0.36 -0.8
3,685,258 + CA264_15790 0.36 +0.2
3,685,382 + CA264_15790 0.64 -0.5
3,685,416 + CA264_15790 0.72 -0.1
3,685,448 - CA264_15790 0.79 -0.5
3,685,457 + CA264_15790 0.81 +1.5
3,685,541 - -0.1
3,685,663 - +0.4
3,685,667 + -0.3
3,685,668 - +0.1
3,685,674 - -0.4
3,685,674 - +0.2
3,685,688 - +0.1
3,685,691 + -0.7
3,685,691 + +1.3
3,685,691 + -0.9
3,685,691 + -0.1
3,685,692 - -0.1
3,685,692 - -0.5
3,685,790 + -0.7
3,685,790 + +0.2
3,685,791 - -0.3
3,685,791 - -0.4
3,685,791 - +0.5
3,685,841 + +0.8

Or see this region's nucleotide sequence