Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15285

Experiment: m.b. perchlorate 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15280 and CA264_15285 are separated by 1 nucleotidesCA264_15285 and CA264_15290 are separated by 54 nucleotides CA264_15280: CA264_15280 - tRNA 2-selenouridine synthase, at 3,576,423 to 3,577,451 _15280 CA264_15285: CA264_15285 - selenide, water dikinase SelD, at 3,577,453 to 3,578,505 _15285 CA264_15290: CA264_15290 - alpha/beta hydrolase, at 3,578,560 to 3,579,330 _15290 Position (kb) 3577 3578 3579Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3576.585 kb on - strand, within CA264_15280at 3576.622 kb on + strand, within CA264_15280at 3576.684 kb on - strand, within CA264_15280at 3576.786 kb on + strand, within CA264_15280at 3576.845 kb on - strand, within CA264_15280at 3576.879 kb on - strand, within CA264_15280at 3576.879 kb on - strand, within CA264_15280at 3576.880 kb on + strand, within CA264_15280at 3576.892 kb on + strand, within CA264_15280at 3576.893 kb on - strand, within CA264_15280at 3576.893 kb on - strand, within CA264_15280at 3576.914 kb on + strand, within CA264_15280at 3576.914 kb on + strand, within CA264_15280at 3576.915 kb on - strand, within CA264_15280at 3576.965 kb on - strand, within CA264_15280at 3576.965 kb on - strand, within CA264_15280at 3577.094 kb on + strand, within CA264_15280at 3577.182 kb on + strand, within CA264_15280at 3577.183 kb on - strand, within CA264_15280at 3577.220 kb on - strand, within CA264_15280at 3577.229 kb on - strand, within CA264_15280at 3577.319 kb on - strand, within CA264_15280at 3577.319 kb on - strand, within CA264_15280at 3577.321 kb on - strand, within CA264_15280at 3577.323 kb on + strand, within CA264_15280at 3577.323 kb on + strand, within CA264_15280at 3577.324 kb on - strand, within CA264_15280at 3577.335 kb on + strand, within CA264_15280at 3577.382 kb on - strandat 3577.382 kb on - strandat 3577.388 kb on + strandat 3577.388 kb on + strandat 3577.388 kb on + strandat 3577.439 kb on + strandat 3577.444 kb on + strandat 3577.444 kb on + strandat 3577.444 kb on + strandat 3577.461 kb on + strandat 3577.462 kb on - strandat 3577.478 kb on + strandat 3577.479 kb on - strandat 3577.519 kb on - strandat 3577.624 kb on - strand, within CA264_15285at 3577.625 kb on - strand, within CA264_15285at 3577.625 kb on - strand, within CA264_15285at 3577.631 kb on + strand, within CA264_15285at 3577.632 kb on - strand, within CA264_15285at 3577.632 kb on - strand, within CA264_15285at 3577.726 kb on - strand, within CA264_15285at 3577.737 kb on - strand, within CA264_15285at 3577.737 kb on - strand, within CA264_15285at 3577.738 kb on + strand, within CA264_15285at 3577.739 kb on - strand, within CA264_15285at 3577.758 kb on + strand, within CA264_15285at 3577.758 kb on + strand, within CA264_15285at 3577.759 kb on - strand, within CA264_15285at 3577.826 kb on + strand, within CA264_15285at 3577.881 kb on + strand, within CA264_15285at 3577.883 kb on + strand, within CA264_15285at 3577.884 kb on + strand, within CA264_15285at 3577.885 kb on - strand, within CA264_15285at 3577.885 kb on - strand, within CA264_15285at 3577.885 kb on - strand, within CA264_15285at 3577.886 kb on + strand, within CA264_15285at 3577.886 kb on + strand, within CA264_15285at 3577.887 kb on - strand, within CA264_15285at 3577.887 kb on - strand, within CA264_15285at 3577.887 kb on - strand, within CA264_15285at 3577.887 kb on - strand, within CA264_15285at 3577.887 kb on - strand, within CA264_15285at 3577.939 kb on - strand, within CA264_15285at 3577.959 kb on + strand, within CA264_15285at 3577.982 kb on + strand, within CA264_15285at 3577.984 kb on + strand, within CA264_15285at 3577.985 kb on - strand, within CA264_15285at 3577.989 kb on - strand, within CA264_15285at 3577.989 kb on - strand, within CA264_15285at 3578.007 kb on - strand, within CA264_15285at 3578.007 kb on - strand, within CA264_15285at 3578.007 kb on - strand, within CA264_15285at 3578.007 kb on - strand, within CA264_15285at 3578.007 kb on - strand, within CA264_15285at 3578.013 kb on - strand, within CA264_15285at 3578.039 kb on + strand, within CA264_15285at 3578.044 kb on - strand, within CA264_15285at 3578.127 kb on - strand, within CA264_15285at 3578.144 kb on + strand, within CA264_15285at 3578.145 kb on - strand, within CA264_15285at 3578.199 kb on - strand, within CA264_15285at 3578.232 kb on + strand, within CA264_15285at 3578.235 kb on - strand, within CA264_15285at 3578.251 kb on + strand, within CA264_15285at 3578.303 kb on - strand, within CA264_15285at 3578.311 kb on - strand, within CA264_15285at 3578.379 kb on - strand, within CA264_15285at 3578.431 kb on + strandat 3578.431 kb on + strandat 3578.431 kb on + strandat 3578.432 kb on - strandat 3578.433 kb on + strandat 3578.434 kb on - strandat 3578.534 kb on + strandat 3578.535 kb on - strandat 3578.567 kb on + strandat 3578.567 kb on + strandat 3578.567 kb on + strandat 3578.568 kb on - strandat 3578.572 kb on + strandat 3578.572 kb on + strandat 3578.573 kb on - strandat 3578.631 kb on - strandat 3578.635 kb on - strandat 3578.672 kb on - strand, within CA264_15290at 3578.672 kb on - strand, within CA264_15290at 3578.672 kb on - strand, within CA264_15290at 3578.679 kb on - strand, within CA264_15290at 3578.730 kb on + strand, within CA264_15290at 3578.730 kb on + strand, within CA264_15290at 3578.730 kb on + strand, within CA264_15290at 3578.730 kb on + strand, within CA264_15290at 3578.731 kb on - strand, within CA264_15290at 3578.731 kb on - strand, within CA264_15290at 3578.734 kb on + strand, within CA264_15290at 3578.735 kb on - strand, within CA264_15290at 3578.741 kb on + strand, within CA264_15290at 3578.795 kb on + strand, within CA264_15290at 3578.795 kb on + strand, within CA264_15290at 3578.836 kb on + strand, within CA264_15290at 3578.863 kb on - strand, within CA264_15290at 3578.942 kb on + strand, within CA264_15290at 3578.949 kb on + strand, within CA264_15290at 3578.955 kb on + strand, within CA264_15290at 3578.975 kb on + strand, within CA264_15290at 3579.014 kb on + strand, within CA264_15290at 3579.014 kb on + strand, within CA264_15290at 3579.014 kb on + strand, within CA264_15290at 3579.015 kb on - strand, within CA264_15290at 3579.015 kb on - strand, within CA264_15290at 3579.020 kb on + strand, within CA264_15290at 3579.108 kb on + strand, within CA264_15290at 3579.108 kb on + strand, within CA264_15290at 3579.108 kb on + strand, within CA264_15290at 3579.109 kb on - strand, within CA264_15290at 3579.109 kb on - strand, within CA264_15290at 3579.110 kb on + strand, within CA264_15290at 3579.110 kb on + strand, within CA264_15290at 3579.111 kb on - strand, within CA264_15290at 3579.159 kb on + strand, within CA264_15290at 3579.161 kb on + strand, within CA264_15290at 3579.181 kb on + strand, within CA264_15290at 3579.183 kb on + strand, within CA264_15290at 3579.183 kb on + strand, within CA264_15290at 3579.184 kb on - strand, within CA264_15290at 3579.239 kb on + strand, within CA264_15290at 3579.239 kb on + strand, within CA264_15290at 3579.293 kb on + strandat 3579.294 kb on + strandat 3579.294 kb on - strandat 3579.316 kb on - strandat 3579.329 kb on - strandat 3579.396 kb on + strandat 3579.424 kb on + strandat 3579.425 kb on - strandat 3579.436 kb on + strandat 3579.436 kb on + strandat 3579.436 kb on + strandat 3579.459 kb on - strandat 3579.467 kb on + strandat 3579.467 kb on + strandat 3579.468 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 100 mM
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3,576,585 - CA264_15280 0.16 -0.4
3,576,622 + CA264_15280 0.19 +0.8
3,576,684 - CA264_15280 0.25 -0.9
3,576,786 + CA264_15280 0.35 -0.6
3,576,845 - CA264_15280 0.41 -0.3
3,576,879 - CA264_15280 0.44 +0.1
3,576,879 - CA264_15280 0.44 -0.2
3,576,880 + CA264_15280 0.44 +0.2
3,576,892 + CA264_15280 0.46 -0.2
3,576,893 - CA264_15280 0.46 -0.1
3,576,893 - CA264_15280 0.46 -0.9
3,576,914 + CA264_15280 0.48 +1.0
3,576,914 + CA264_15280 0.48 +0.1
3,576,915 - CA264_15280 0.48 +0.1
3,576,965 - CA264_15280 0.53 +0.3
3,576,965 - CA264_15280 0.53 -0.9
3,577,094 + CA264_15280 0.65 +2.2
3,577,182 + CA264_15280 0.74 +0.1
3,577,183 - CA264_15280 0.74 -0.5
3,577,220 - CA264_15280 0.77 +0.9
3,577,229 - CA264_15280 0.78 -0.3
3,577,319 - CA264_15280 0.87 +0.1
3,577,319 - CA264_15280 0.87 +0.0
3,577,321 - CA264_15280 0.87 +0.3
3,577,323 + CA264_15280 0.87 +0.1
3,577,323 + CA264_15280 0.87 +2.3
3,577,324 - CA264_15280 0.88 -0.3
3,577,335 + CA264_15280 0.89 +0.1
3,577,382 - -3.3
3,577,382 - +0.4
3,577,388 + +0.4
3,577,388 + -0.6
3,577,388 + -0.1
3,577,439 + -0.6
3,577,444 + +0.1
3,577,444 + +0.1
3,577,444 + -0.3
3,577,461 + -0.0
3,577,462 - -0.4
3,577,478 + +0.2
3,577,479 - -0.4
3,577,519 - -0.3
3,577,624 - CA264_15285 0.16 -0.6
3,577,625 - CA264_15285 0.16 +1.3
3,577,625 - CA264_15285 0.16 +0.6
3,577,631 + CA264_15285 0.17 -0.1
3,577,632 - CA264_15285 0.17 +0.1
3,577,632 - CA264_15285 0.17 -0.3
3,577,726 - CA264_15285 0.26 -0.5
3,577,737 - CA264_15285 0.27 -0.1
3,577,737 - CA264_15285 0.27 -0.1
3,577,738 + CA264_15285 0.27 +0.6
3,577,739 - CA264_15285 0.27 -0.6
3,577,758 + CA264_15285 0.29 +1.6
3,577,758 + CA264_15285 0.29 +0.2
3,577,759 - CA264_15285 0.29 +1.7
3,577,826 + CA264_15285 0.35 +1.0
3,577,881 + CA264_15285 0.41 +0.1
3,577,883 + CA264_15285 0.41 -0.3
3,577,884 + CA264_15285 0.41 +0.9
3,577,885 - CA264_15285 0.41 -0.1
3,577,885 - CA264_15285 0.41 +0.2
3,577,885 - CA264_15285 0.41 +0.4
3,577,886 + CA264_15285 0.41 -0.4
3,577,886 + CA264_15285 0.41 +0.1
3,577,887 - CA264_15285 0.41 +1.7
3,577,887 - CA264_15285 0.41 -0.1
3,577,887 - CA264_15285 0.41 +1.2
3,577,887 - CA264_15285 0.41 +0.4
3,577,887 - CA264_15285 0.41 +0.5
3,577,939 - CA264_15285 0.46 +0.7
3,577,959 + CA264_15285 0.48 -0.2
3,577,982 + CA264_15285 0.50 +0.4
3,577,984 + CA264_15285 0.50 -2.1
3,577,985 - CA264_15285 0.51 -0.8
3,577,989 - CA264_15285 0.51 -0.7
3,577,989 - CA264_15285 0.51 +0.4
3,578,007 - CA264_15285 0.53 +0.4
3,578,007 - CA264_15285 0.53 -0.3
3,578,007 - CA264_15285 0.53 -0.2
3,578,007 - CA264_15285 0.53 -0.3
3,578,007 - CA264_15285 0.53 +1.5
3,578,013 - CA264_15285 0.53 -0.5
3,578,039 + CA264_15285 0.56 +0.1
3,578,044 - CA264_15285 0.56 -0.1
3,578,127 - CA264_15285 0.64 -1.3
3,578,144 + CA264_15285 0.66 +0.6
3,578,145 - CA264_15285 0.66 -0.3
3,578,199 - CA264_15285 0.71 +0.5
3,578,232 + CA264_15285 0.74 +2.1
3,578,235 - CA264_15285 0.74 +0.8
3,578,251 + CA264_15285 0.76 +0.5
3,578,303 - CA264_15285 0.81 +1.2
3,578,311 - CA264_15285 0.81 +0.2
3,578,379 - CA264_15285 0.88 -0.3
3,578,431 + +0.4
3,578,431 + -0.3
3,578,431 + -0.3
3,578,432 - +0.3
3,578,433 + -0.6
3,578,434 - -0.3
3,578,534 + +0.9
3,578,535 - -0.1
3,578,567 + +0.4
3,578,567 + -0.2
3,578,567 + +0.1
3,578,568 - -0.1
3,578,572 + -0.1
3,578,572 + +0.7
3,578,573 - -0.1
3,578,631 - -0.1
3,578,635 - +0.7
3,578,672 - CA264_15290 0.15 +0.3
3,578,672 - CA264_15290 0.15 +1.2
3,578,672 - CA264_15290 0.15 +0.3
3,578,679 - CA264_15290 0.15 +0.2
3,578,730 + CA264_15290 0.22 +0.1
3,578,730 + CA264_15290 0.22 +0.3
3,578,730 + CA264_15290 0.22 +0.7
3,578,730 + CA264_15290 0.22 -0.2
3,578,731 - CA264_15290 0.22 -1.2
3,578,731 - CA264_15290 0.22 -0.2
3,578,734 + CA264_15290 0.23 +1.3
3,578,735 - CA264_15290 0.23 -0.2
3,578,741 + CA264_15290 0.23 +0.2
3,578,795 + CA264_15290 0.30 +0.5
3,578,795 + CA264_15290 0.30 -2.5
3,578,836 + CA264_15290 0.36 +0.3
3,578,863 - CA264_15290 0.39 +0.2
3,578,942 + CA264_15290 0.50 -0.2
3,578,949 + CA264_15290 0.50 +0.3
3,578,955 + CA264_15290 0.51 +0.4
3,578,975 + CA264_15290 0.54 -0.8
3,579,014 + CA264_15290 0.59 -0.5
3,579,014 + CA264_15290 0.59 +0.1
3,579,014 + CA264_15290 0.59 -0.0
3,579,015 - CA264_15290 0.59 +0.5
3,579,015 - CA264_15290 0.59 +0.1
3,579,020 + CA264_15290 0.60 -0.5
3,579,108 + CA264_15290 0.71 +0.9
3,579,108 + CA264_15290 0.71 +0.2
3,579,108 + CA264_15290 0.71 -0.4
3,579,109 - CA264_15290 0.71 -0.1
3,579,109 - CA264_15290 0.71 +0.2
3,579,110 + CA264_15290 0.71 +0.1
3,579,110 + CA264_15290 0.71 -0.5
3,579,111 - CA264_15290 0.71 +1.5
3,579,159 + CA264_15290 0.78 +0.1
3,579,161 + CA264_15290 0.78 +0.7
3,579,181 + CA264_15290 0.81 +0.6
3,579,183 + CA264_15290 0.81 +0.2
3,579,183 + CA264_15290 0.81 +0.3
3,579,184 - CA264_15290 0.81 -0.3
3,579,239 + CA264_15290 0.88 -0.2
3,579,239 + CA264_15290 0.88 -0.4
3,579,293 + +1.5
3,579,294 + +0.1
3,579,294 - -0.5
3,579,316 - -0.7
3,579,329 - +0.7
3,579,396 + +0.3
3,579,424 + -0.9
3,579,425 - -0.1
3,579,436 + +1.7
3,579,436 + -0.5
3,579,436 + -0.5
3,579,459 - -0.4
3,579,467 + -1.3
3,579,467 + -0.4
3,579,468 - -0.9

Or see this region's nucleotide sequence