Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14950

Experiment: m.b. perchlorate 100 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_14940 and CA264_14945 are separated by 200 nucleotidesCA264_14945 and CA264_14950 overlap by 26 nucleotidesCA264_14950 and CA264_14955 are separated by 19 nucleotidesCA264_14955 and CA264_14960 are separated by 81 nucleotides CA264_14940: CA264_14940 - hypothetical protein, at 3,509,535 to 3,509,795 _14940 CA264_14945: CA264_14945 - RNA polymerase subunit sigma-24, at 3,509,996 to 3,510,598 _14945 CA264_14950: CA264_14950 - hypothetical protein, at 3,510,573 to 3,510,803 _14950 CA264_14955: CA264_14955 - endonuclease III, at 3,510,823 to 3,511,509 _14955 CA264_14960: CA264_14960 - hypothetical protein, at 3,511,591 to 3,512,070 _14960 Position (kb) 3510 3511Strain fitness (log2 ratio) -1 0 1 2at 3509.618 kb on + strand, within CA264_14940at 3509.722 kb on + strand, within CA264_14940at 3509.735 kb on + strand, within CA264_14940at 3509.736 kb on - strand, within CA264_14940at 3509.748 kb on - strand, within CA264_14940at 3509.787 kb on + strandat 3509.788 kb on - strandat 3509.788 kb on - strandat 3509.791 kb on + strandat 3509.792 kb on - strandat 3509.792 kb on - strandat 3509.793 kb on + strandat 3509.794 kb on - strandat 3509.802 kb on + strandat 3509.865 kb on - strandat 3509.889 kb on - strandat 3509.900 kb on + strandat 3509.900 kb on + strandat 3509.956 kb on + strandat 3509.956 kb on + strandat 3509.956 kb on + strandat 3509.957 kb on - strandat 3509.963 kb on + strandat 3509.971 kb on + strandat 3509.972 kb on - strandat 3510.031 kb on - strandat 3510.076 kb on - strand, within CA264_14945at 3510.076 kb on - strand, within CA264_14945at 3510.101 kb on + strand, within CA264_14945at 3510.102 kb on - strand, within CA264_14945at 3510.110 kb on - strand, within CA264_14945at 3510.114 kb on + strand, within CA264_14945at 3510.134 kb on + strand, within CA264_14945at 3510.181 kb on + strand, within CA264_14945at 3510.181 kb on + strand, within CA264_14945at 3510.517 kb on + strand, within CA264_14945at 3510.577 kb on + strandat 3510.587 kb on + strandat 3510.609 kb on + strand, within CA264_14950at 3510.610 kb on - strand, within CA264_14950at 3510.610 kb on - strand, within CA264_14950at 3510.610 kb on - strand, within CA264_14950at 3510.613 kb on + strand, within CA264_14950at 3510.613 kb on + strand, within CA264_14950at 3510.613 kb on + strand, within CA264_14950at 3510.614 kb on - strand, within CA264_14950at 3510.614 kb on - strand, within CA264_14950at 3510.614 kb on - strand, within CA264_14950at 3510.662 kb on + strand, within CA264_14950at 3510.663 kb on - strand, within CA264_14950at 3510.663 kb on - strand, within CA264_14950at 3510.663 kb on - strand, within CA264_14950at 3510.679 kb on + strand, within CA264_14950at 3510.718 kb on + strand, within CA264_14950at 3510.787 kb on + strandat 3510.802 kb on - strandat 3510.998 kb on - strand, within CA264_14955at 3510.998 kb on - strand, within CA264_14955at 3511.021 kb on - strand, within CA264_14955at 3511.148 kb on + strand, within CA264_14955at 3511.160 kb on + strand, within CA264_14955at 3511.197 kb on + strand, within CA264_14955at 3511.277 kb on + strand, within CA264_14955at 3511.489 kb on - strandat 3511.580 kb on - strandat 3511.615 kb on - strandat 3511.654 kb on - strand, within CA264_14960

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 100 mM
remove
3,509,618 + CA264_14940 0.32 -0.3
3,509,722 + CA264_14940 0.72 -0.6
3,509,735 + CA264_14940 0.77 -0.6
3,509,736 - CA264_14940 0.77 -0.5
3,509,748 - CA264_14940 0.82 +0.1
3,509,787 + +1.0
3,509,788 - +0.1
3,509,788 - -0.4
3,509,791 + +2.5
3,509,792 - +0.6
3,509,792 - +0.1
3,509,793 + +1.3
3,509,794 - -0.5
3,509,802 + -0.3
3,509,865 - -0.6
3,509,889 - -0.4
3,509,900 + -0.1
3,509,900 + +1.7
3,509,956 + +0.9
3,509,956 + +0.9
3,509,956 + +0.8
3,509,957 - -0.3
3,509,963 + +0.9
3,509,971 + +0.6
3,509,972 - -0.3
3,510,031 - +0.3
3,510,076 - CA264_14945 0.13 -0.1
3,510,076 - CA264_14945 0.13 +1.1
3,510,101 + CA264_14945 0.17 +0.4
3,510,102 - CA264_14945 0.18 -0.6
3,510,110 - CA264_14945 0.19 -0.3
3,510,114 + CA264_14945 0.20 -1.1
3,510,134 + CA264_14945 0.23 -0.4
3,510,181 + CA264_14945 0.31 +0.9
3,510,181 + CA264_14945 0.31 -1.0
3,510,517 + CA264_14945 0.86 +0.2
3,510,577 + +0.8
3,510,587 + +0.6
3,510,609 + CA264_14950 0.16 +0.8
3,510,610 - CA264_14950 0.16 -0.9
3,510,610 - CA264_14950 0.16 +0.1
3,510,610 - CA264_14950 0.16 +0.1
3,510,613 + CA264_14950 0.17 +1.2
3,510,613 + CA264_14950 0.17 +0.6
3,510,613 + CA264_14950 0.17 -0.7
3,510,614 - CA264_14950 0.18 +0.9
3,510,614 - CA264_14950 0.18 -0.4
3,510,614 - CA264_14950 0.18 -0.1
3,510,662 + CA264_14950 0.39 -0.5
3,510,663 - CA264_14950 0.39 -0.1
3,510,663 - CA264_14950 0.39 +0.4
3,510,663 - CA264_14950 0.39 -0.1
3,510,679 + CA264_14950 0.46 +0.8
3,510,718 + CA264_14950 0.63 +1.1
3,510,787 + +0.2
3,510,802 - -0.7
3,510,998 - CA264_14955 0.25 -1.2
3,510,998 - CA264_14955 0.25 -0.6
3,511,021 - CA264_14955 0.29 -0.1
3,511,148 + CA264_14955 0.47 -0.7
3,511,160 + CA264_14955 0.49 +0.7
3,511,197 + CA264_14955 0.54 -0.6
3,511,277 + CA264_14955 0.66 -0.5
3,511,489 - +0.7
3,511,580 - +1.0
3,511,615 - +0.9
3,511,654 - CA264_14960 0.13 -0.0

Or see this region's nucleotide sequence