Experiment: m.b. perchlorate 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_09970 and CA264_09975 are separated by 12 nucleotides CA264_09975 and CA264_09980 are separated by 19 nucleotides CA264_09980 and CA264_09985 are separated by 46 nucleotides CA264_09985 and CA264_09990 are separated by 272 nucleotides CA264_09990 and CA264_09995 overlap by 4 nucleotides
CA264_09970: CA264_09970 - conjugal transfer protein TraG, at 2,320,400 to 2,322,910
_09970
CA264_09975: CA264_09975 - hypothetical protein, at 2,322,923 to 2,323,270
_09975
CA264_09980: CA264_09980 - carbamoyl phosphate synthetase, at 2,323,290 to 2,323,598
_09980
CA264_09985: CA264_09985 - hypothetical protein, at 2,323,645 to 2,324,124
_09985
CA264_09990: CA264_09990 - hypothetical protein, at 2,324,397 to 2,324,561
_09990
CA264_09995: CA264_09995 - hypothetical protein, at 2,324,558 to 2,325,535
_09995
Position (kb)
2323
2324
2325 Strain fitness (log2 ratio)
-2
-1
0
1 at 2322.684 kb on + strand at 2322.896 kb on + strand at 2322.925 kb on - strand at 2322.927 kb on + strand at 2322.927 kb on + strand at 2322.928 kb on - strand at 2323.052 kb on - strand, within CA264_09975 at 2323.195 kb on + strand, within CA264_09975 at 2323.196 kb on - strand, within CA264_09975 at 2323.198 kb on - strand, within CA264_09975 at 2323.252 kb on + strand at 2323.252 kb on + strand at 2323.253 kb on - strand at 2323.311 kb on - strand at 2323.332 kb on + strand, within CA264_09980 at 2323.333 kb on - strand, within CA264_09980 at 2323.451 kb on - strand, within CA264_09980 at 2323.503 kb on + strand, within CA264_09980 at 2323.503 kb on + strand, within CA264_09980 at 2323.653 kb on + strand at 2323.747 kb on + strand, within CA264_09985 at 2323.781 kb on + strand, within CA264_09985 at 2324.057 kb on - strand, within CA264_09985 at 2324.198 kb on + strand at 2324.308 kb on + strand at 2324.383 kb on - strand at 2324.604 kb on + strand at 2324.605 kb on - strand at 2324.804 kb on - strand, within CA264_09995 at 2324.816 kb on + strand, within CA264_09995 at 2324.883 kb on + strand, within CA264_09995 at 2324.883 kb on + strand, within CA264_09995 at 2324.884 kb on - strand, within CA264_09995 at 2324.884 kb on - strand, within CA264_09995 at 2324.884 kb on - strand, within CA264_09995 at 2324.887 kb on + strand, within CA264_09995 at 2324.891 kb on + strand, within CA264_09995 at 2324.891 kb on + strand, within CA264_09995 at 2324.891 kb on + strand, within CA264_09995 at 2324.891 kb on + strand, within CA264_09995 at 2324.892 kb on - strand, within CA264_09995 at 2324.892 kb on - strand, within CA264_09995 at 2324.892 kb on - strand, within CA264_09995 at 2324.892 kb on - strand, within CA264_09995 at 2324.892 kb on - strand, within CA264_09995 at 2325.099 kb on + strand, within CA264_09995
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. perchlorate 100 mM remove 2,322,684 + +0.3 2,322,896 + -1.8 2,322,925 - -0.5 2,322,927 + -1.4 2,322,927 + -0.3 2,322,928 - -0.8 2,323,052 - CA264_09975 0.37 -0.6 2,323,195 + CA264_09975 0.78 -1.1 2,323,196 - CA264_09975 0.78 +0.4 2,323,198 - CA264_09975 0.79 +0.2 2,323,252 + -0.8 2,323,252 + +0.3 2,323,253 - -0.3 2,323,311 - +0.4 2,323,332 + CA264_09980 0.14 -0.7 2,323,333 - CA264_09980 0.14 -0.4 2,323,451 - CA264_09980 0.52 -1.6 2,323,503 + CA264_09980 0.69 -0.5 2,323,503 + CA264_09980 0.69 -0.5 2,323,653 + -1.1 2,323,747 + CA264_09985 0.21 -0.4 2,323,781 + CA264_09985 0.28 +0.5 2,324,057 - CA264_09985 0.86 -0.7 2,324,198 + +0.1 2,324,308 + -0.5 2,324,383 - -1.0 2,324,604 + -0.4 2,324,605 - +0.7 2,324,804 - CA264_09995 0.25 +0.1 2,324,816 + CA264_09995 0.26 -0.6 2,324,883 + CA264_09995 0.33 +0.4 2,324,883 + CA264_09995 0.33 -1.7 2,324,884 - CA264_09995 0.33 -0.8 2,324,884 - CA264_09995 0.33 +1.4 2,324,884 - CA264_09995 0.33 -2.5 2,324,887 + CA264_09995 0.34 -0.9 2,324,891 + CA264_09995 0.34 +0.9 2,324,891 + CA264_09995 0.34 +0.1 2,324,891 + CA264_09995 0.34 -0.2 2,324,891 + CA264_09995 0.34 +1.0 2,324,892 - CA264_09995 0.34 -1.2 2,324,892 - CA264_09995 0.34 -1.0 2,324,892 - CA264_09995 0.34 -0.3 2,324,892 - CA264_09995 0.34 -2.1 2,324,892 - CA264_09995 0.34 -1.3 2,325,099 + CA264_09995 0.55 +0.9
Or see this region's nucleotide sequence