Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09225

Experiment: m.b. perchlorate 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09215 and CA264_09220 overlap by 4 nucleotidesCA264_09220 and CA264_09225 are separated by 201 nucleotidesCA264_09225 and CA264_09230 are separated by 3 nucleotides CA264_09215: CA264_09215 - ferredoxin--NADP(+) reductase, at 2,157,577 to 2,158,593 _09215 CA264_09220: CA264_09220 - ferredoxin, at 2,158,590 to 2,158,913 _09220 CA264_09225: CA264_09225 - Fe-S oxidoreductase, at 2,159,115 to 2,159,855 _09225 CA264_09230: CA264_09230 - hydroxymethylglutaryl-CoA lyase, at 2,159,859 to 2,160,704 _09230 Position (kb) 2159 2160Strain fitness (log2 ratio) -2 -1 0 1 2at 2158.122 kb on - strand, within CA264_09215at 2158.122 kb on - strand, within CA264_09215at 2158.173 kb on + strand, within CA264_09215at 2158.173 kb on + strand, within CA264_09215at 2158.173 kb on + strand, within CA264_09215at 2158.173 kb on + strand, within CA264_09215at 2158.174 kb on - strand, within CA264_09215at 2158.174 kb on - strand, within CA264_09215at 2158.174 kb on - strand, within CA264_09215at 2158.210 kb on - strand, within CA264_09215at 2158.216 kb on - strand, within CA264_09215at 2158.216 kb on - strand, within CA264_09215at 2158.216 kb on - strand, within CA264_09215at 2158.220 kb on + strand, within CA264_09215at 2158.220 kb on + strand, within CA264_09215at 2158.221 kb on - strand, within CA264_09215at 2158.268 kb on + strand, within CA264_09215at 2158.402 kb on + strand, within CA264_09215at 2158.426 kb on + strand, within CA264_09215at 2158.427 kb on - strand, within CA264_09215at 2158.427 kb on - strand, within CA264_09215at 2158.427 kb on - strand, within CA264_09215at 2158.450 kb on + strand, within CA264_09215at 2158.451 kb on - strand, within CA264_09215at 2158.472 kb on + strand, within CA264_09215at 2158.517 kb on - strandat 2158.521 kb on + strandat 2158.522 kb on - strandat 2158.522 kb on - strandat 2158.528 kb on + strandat 2158.536 kb on + strandat 2158.551 kb on - strandat 2158.584 kb on - strandat 2158.603 kb on + strandat 2158.604 kb on - strandat 2158.609 kb on + strandat 2158.609 kb on + strandat 2158.610 kb on - strandat 2158.610 kb on - strandat 2158.611 kb on + strandat 2158.611 kb on + strandat 2158.611 kb on + strandat 2158.611 kb on + strandat 2158.676 kb on + strand, within CA264_09220at 2158.754 kb on - strand, within CA264_09220at 2158.803 kb on + strand, within CA264_09220at 2158.803 kb on + strand, within CA264_09220at 2158.803 kb on + strand, within CA264_09220at 2158.804 kb on - strand, within CA264_09220at 2158.805 kb on + strand, within CA264_09220at 2158.806 kb on - strand, within CA264_09220at 2158.806 kb on - strand, within CA264_09220at 2158.899 kb on - strandat 2159.020 kb on + strandat 2159.021 kb on - strandat 2159.024 kb on - strandat 2159.060 kb on + strandat 2159.061 kb on - strandat 2159.084 kb on + strandat 2159.084 kb on + strandat 2159.110 kb on + strandat 2159.110 kb on + strandat 2159.111 kb on - strandat 2159.113 kb on - strandat 2159.113 kb on - strandat 2159.113 kb on - strandat 2159.113 kb on - strandat 2159.182 kb on + strandat 2159.228 kb on - strand, within CA264_09225at 2159.256 kb on + strand, within CA264_09225at 2159.274 kb on - strand, within CA264_09225at 2159.285 kb on + strand, within CA264_09225at 2159.286 kb on - strand, within CA264_09225at 2159.286 kb on - strand, within CA264_09225at 2159.286 kb on - strand, within CA264_09225at 2159.310 kb on - strand, within CA264_09225at 2159.310 kb on - strand, within CA264_09225at 2159.376 kb on + strand, within CA264_09225at 2159.377 kb on - strand, within CA264_09225at 2159.438 kb on - strand, within CA264_09225at 2159.444 kb on - strand, within CA264_09225at 2159.477 kb on + strand, within CA264_09225at 2159.478 kb on - strand, within CA264_09225at 2159.578 kb on + strand, within CA264_09225at 2159.626 kb on + strand, within CA264_09225at 2159.664 kb on - strand, within CA264_09225at 2159.739 kb on - strand, within CA264_09225at 2159.740 kb on + strand, within CA264_09225at 2159.831 kb on + strandat 2159.839 kb on - strandat 2159.855 kb on + strandat 2159.855 kb on + strandat 2159.856 kb on - strandat 2159.863 kb on - strandat 2159.925 kb on + strandat 2160.093 kb on - strand, within CA264_09230at 2160.093 kb on - strand, within CA264_09230at 2160.271 kb on + strand, within CA264_09230at 2160.298 kb on + strand, within CA264_09230at 2160.298 kb on + strand, within CA264_09230at 2160.298 kb on + strand, within CA264_09230at 2160.299 kb on - strand, within CA264_09230at 2160.302 kb on + strand, within CA264_09230at 2160.627 kb on - strandat 2160.647 kb on + strandat 2160.651 kb on + strandat 2160.654 kb on - strandat 2160.812 kb on - strandat 2160.819 kb on - strandat 2160.823 kb on + strandat 2160.835 kb on + strandat 2160.835 kb on + strandat 2160.836 kb on - strandat 2160.837 kb on + strandat 2160.845 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 100 mM
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2,158,122 - CA264_09215 0.54 -0.0
2,158,122 - CA264_09215 0.54 -0.7
2,158,173 + CA264_09215 0.59 -0.3
2,158,173 + CA264_09215 0.59 +0.9
2,158,173 + CA264_09215 0.59 +0.3
2,158,173 + CA264_09215 0.59 +0.4
2,158,174 - CA264_09215 0.59 +0.2
2,158,174 - CA264_09215 0.59 +0.2
2,158,174 - CA264_09215 0.59 -0.2
2,158,210 - CA264_09215 0.62 +0.3
2,158,216 - CA264_09215 0.63 -0.0
2,158,216 - CA264_09215 0.63 +0.0
2,158,216 - CA264_09215 0.63 +0.8
2,158,220 + CA264_09215 0.63 -0.2
2,158,220 + CA264_09215 0.63 +0.5
2,158,221 - CA264_09215 0.63 -0.1
2,158,268 + CA264_09215 0.68 -0.4
2,158,402 + CA264_09215 0.81 +0.1
2,158,426 + CA264_09215 0.83 -0.2
2,158,427 - CA264_09215 0.84 +0.7
2,158,427 - CA264_09215 0.84 +0.5
2,158,427 - CA264_09215 0.84 +1.7
2,158,450 + CA264_09215 0.86 +0.6
2,158,451 - CA264_09215 0.86 +0.1
2,158,472 + CA264_09215 0.88 +0.2
2,158,517 - +0.9
2,158,521 + -0.1
2,158,522 - +0.5
2,158,522 - -0.3
2,158,528 + +0.1
2,158,536 + +0.7
2,158,551 - +0.4
2,158,584 - +0.1
2,158,603 + -0.4
2,158,604 - -0.1
2,158,609 + -0.2
2,158,609 + -0.4
2,158,610 - +0.1
2,158,610 - +0.8
2,158,611 + -0.5
2,158,611 + -0.0
2,158,611 + +0.7
2,158,611 + +0.3
2,158,676 + CA264_09220 0.27 +0.1
2,158,754 - CA264_09220 0.51 +0.2
2,158,803 + CA264_09220 0.66 -0.2
2,158,803 + CA264_09220 0.66 +1.3
2,158,803 + CA264_09220 0.66 -0.4
2,158,804 - CA264_09220 0.66 -0.3
2,158,805 + CA264_09220 0.66 +0.1
2,158,806 - CA264_09220 0.67 +0.1
2,158,806 - CA264_09220 0.67 +1.0
2,158,899 - -0.8
2,159,020 + -0.1
2,159,021 - +0.3
2,159,024 - +0.3
2,159,060 + -0.4
2,159,061 - -0.6
2,159,084 + -0.2
2,159,084 + -0.6
2,159,110 + -0.2
2,159,110 + +0.2
2,159,111 - +1.8
2,159,113 - -1.5
2,159,113 - +0.1
2,159,113 - -0.5
2,159,113 - -0.2
2,159,182 + -0.5
2,159,228 - CA264_09225 0.15 +0.3
2,159,256 + CA264_09225 0.19 -0.1
2,159,274 - CA264_09225 0.21 +1.0
2,159,285 + CA264_09225 0.23 +1.3
2,159,286 - CA264_09225 0.23 -0.3
2,159,286 - CA264_09225 0.23 -0.1
2,159,286 - CA264_09225 0.23 -0.1
2,159,310 - CA264_09225 0.26 -0.4
2,159,310 - CA264_09225 0.26 -0.4
2,159,376 + CA264_09225 0.35 -0.8
2,159,377 - CA264_09225 0.35 -0.1
2,159,438 - CA264_09225 0.44 +0.6
2,159,444 - CA264_09225 0.44 +0.3
2,159,477 + CA264_09225 0.49 -0.4
2,159,478 - CA264_09225 0.49 -0.1
2,159,578 + CA264_09225 0.62 +0.3
2,159,626 + CA264_09225 0.69 -0.3
2,159,664 - CA264_09225 0.74 -0.1
2,159,739 - CA264_09225 0.84 +0.5
2,159,740 + CA264_09225 0.84 -0.1
2,159,831 + -0.8
2,159,839 - +0.1
2,159,855 + +0.3
2,159,855 + +0.0
2,159,856 - +0.3
2,159,863 - -0.1
2,159,925 + +0.8
2,160,093 - CA264_09230 0.28 -0.2
2,160,093 - CA264_09230 0.28 +0.3
2,160,271 + CA264_09230 0.49 +0.6
2,160,298 + CA264_09230 0.52 -0.8
2,160,298 + CA264_09230 0.52 +1.7
2,160,298 + CA264_09230 0.52 +0.1
2,160,299 - CA264_09230 0.52 +1.1
2,160,302 + CA264_09230 0.52 -0.9
2,160,627 - -0.3
2,160,647 + -0.9
2,160,651 + -1.6
2,160,654 - +1.0
2,160,812 - -2.4
2,160,819 - +0.1
2,160,823 + -0.9
2,160,835 + -0.0
2,160,835 + +0.2
2,160,836 - -0.2
2,160,837 + -0.9
2,160,845 + +0.1

Or see this region's nucleotide sequence