Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08925

Experiment: m.b. perchlorate 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08920 and CA264_08925 are separated by 237 nucleotidesCA264_08925 and CA264_08930 are separated by 156 nucleotides CA264_08920: CA264_08920 - phosphoserine phosphatase, at 2,084,047 to 2,084,667 _08920 CA264_08925: CA264_08925 - 23S rRNA pseudouridine synthase F, at 2,084,905 to 2,085,891 _08925 CA264_08930: CA264_08930 - hypothetical protein, at 2,086,048 to 2,087,070 _08930 Position (kb) 2084 2085 2086Strain fitness (log2 ratio) -2 -1 0 1 2at 2083.984 kb on - strandat 2084.016 kb on + strandat 2084.044 kb on - strandat 2084.131 kb on + strand, within CA264_08920at 2084.131 kb on + strand, within CA264_08920at 2084.189 kb on - strand, within CA264_08920at 2084.189 kb on - strand, within CA264_08920at 2084.191 kb on + strand, within CA264_08920at 2084.191 kb on + strand, within CA264_08920at 2084.191 kb on + strand, within CA264_08920at 2084.191 kb on + strand, within CA264_08920at 2084.191 kb on + strand, within CA264_08920at 2084.192 kb on - strand, within CA264_08920at 2084.192 kb on - strand, within CA264_08920at 2084.192 kb on - strand, within CA264_08920at 2084.250 kb on + strand, within CA264_08920at 2084.254 kb on + strand, within CA264_08920at 2084.254 kb on + strand, within CA264_08920at 2084.258 kb on + strand, within CA264_08920at 2084.259 kb on - strand, within CA264_08920at 2084.384 kb on + strand, within CA264_08920at 2084.384 kb on + strand, within CA264_08920at 2084.385 kb on - strand, within CA264_08920at 2084.386 kb on + strand, within CA264_08920at 2084.387 kb on - strand, within CA264_08920at 2084.413 kb on + strand, within CA264_08920at 2084.437 kb on + strand, within CA264_08920at 2084.488 kb on + strand, within CA264_08920at 2084.498 kb on + strand, within CA264_08920at 2084.768 kb on - strandat 2084.776 kb on - strandat 2084.794 kb on + strandat 2084.922 kb on - strandat 2085.057 kb on - strand, within CA264_08925at 2085.068 kb on + strand, within CA264_08925at 2085.097 kb on + strand, within CA264_08925at 2085.097 kb on + strand, within CA264_08925at 2085.098 kb on - strand, within CA264_08925at 2085.235 kb on - strand, within CA264_08925at 2085.369 kb on - strand, within CA264_08925at 2085.369 kb on - strand, within CA264_08925at 2085.369 kb on - strand, within CA264_08925at 2085.369 kb on - strand, within CA264_08925at 2085.480 kb on - strand, within CA264_08925at 2085.922 kb on + strandat 2085.943 kb on - strandat 2085.943 kb on - strandat 2085.943 kb on - strandat 2085.946 kb on + strandat 2086.013 kb on + strandat 2086.013 kb on + strandat 2086.016 kb on + strandat 2086.041 kb on + strandat 2086.068 kb on + strandat 2086.170 kb on - strand, within CA264_08930at 2086.176 kb on - strand, within CA264_08930at 2086.193 kb on + strand, within CA264_08930at 2086.193 kb on + strand, within CA264_08930at 2086.193 kb on + strand, within CA264_08930at 2086.546 kb on - strand, within CA264_08930at 2086.546 kb on - strand, within CA264_08930at 2086.613 kb on + strand, within CA264_08930at 2086.614 kb on - strand, within CA264_08930at 2086.752 kb on + strand, within CA264_08930

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 100 mM
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2,083,984 - +0.9
2,084,016 + +1.4
2,084,044 - +0.1
2,084,131 + CA264_08920 0.14 -0.4
2,084,131 + CA264_08920 0.14 -0.8
2,084,189 - CA264_08920 0.23 +0.4
2,084,189 - CA264_08920 0.23 +0.1
2,084,191 + CA264_08920 0.23 -0.2
2,084,191 + CA264_08920 0.23 -0.4
2,084,191 + CA264_08920 0.23 -0.7
2,084,191 + CA264_08920 0.23 +0.0
2,084,191 + CA264_08920 0.23 -0.5
2,084,192 - CA264_08920 0.23 +1.2
2,084,192 - CA264_08920 0.23 -0.3
2,084,192 - CA264_08920 0.23 -0.4
2,084,250 + CA264_08920 0.33 -0.8
2,084,254 + CA264_08920 0.33 +0.1
2,084,254 + CA264_08920 0.33 +1.4
2,084,258 + CA264_08920 0.34 +0.1
2,084,259 - CA264_08920 0.34 +0.3
2,084,384 + CA264_08920 0.54 +2.1
2,084,384 + CA264_08920 0.54 +0.5
2,084,385 - CA264_08920 0.54 -0.0
2,084,386 + CA264_08920 0.55 -0.4
2,084,387 - CA264_08920 0.55 -0.2
2,084,413 + CA264_08920 0.59 +0.4
2,084,437 + CA264_08920 0.63 -0.2
2,084,488 + CA264_08920 0.71 -0.8
2,084,498 + CA264_08920 0.73 +0.8
2,084,768 - +0.4
2,084,776 - -0.4
2,084,794 + +1.1
2,084,922 - -0.0
2,085,057 - CA264_08925 0.15 -1.4
2,085,068 + CA264_08925 0.17 -0.5
2,085,097 + CA264_08925 0.19 +0.1
2,085,097 + CA264_08925 0.19 +0.0
2,085,098 - CA264_08925 0.20 -1.0
2,085,235 - CA264_08925 0.33 +0.5
2,085,369 - CA264_08925 0.47 -1.0
2,085,369 - CA264_08925 0.47 -1.2
2,085,369 - CA264_08925 0.47 -0.6
2,085,369 - CA264_08925 0.47 -0.2
2,085,480 - CA264_08925 0.58 -0.5
2,085,922 + +1.5
2,085,943 - -0.5
2,085,943 - +0.7
2,085,943 - +0.1
2,085,946 + -0.5
2,086,013 + -1.8
2,086,013 + +0.1
2,086,016 + -0.2
2,086,041 + +0.2
2,086,068 + -1.2
2,086,170 - CA264_08930 0.12 +0.1
2,086,176 - CA264_08930 0.13 -0.3
2,086,193 + CA264_08930 0.14 +0.0
2,086,193 + CA264_08930 0.14 -1.0
2,086,193 + CA264_08930 0.14 -0.0
2,086,546 - CA264_08930 0.49 +0.6
2,086,546 - CA264_08930 0.49 +1.1
2,086,613 + CA264_08930 0.55 -0.6
2,086,614 - CA264_08930 0.55 -1.8
2,086,752 + CA264_08930 0.69 +0.0

Or see this region's nucleotide sequence