Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07305

Experiment: m.b. perchlorate 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07300 and CA264_07305 are separated by 201 nucleotidesCA264_07305 and CA264_07310 are separated by 80 nucleotides CA264_07300: CA264_07300 - TIGR00374 family protein, at 1,686,746 to 1,687,858 _07300 CA264_07305: CA264_07305 - hypothetical protein, at 1,688,060 to 1,689,325 _07305 CA264_07310: CA264_07310 - two-component sensor histidine kinase, at 1,689,406 to 1,690,668 _07310 Position (kb) 1688 1689 1690Strain fitness (log2 ratio) -1 0 1at 1687.070 kb on + strand, within CA264_07300at 1687.071 kb on - strand, within CA264_07300at 1687.071 kb on - strand, within CA264_07300at 1687.142 kb on - strand, within CA264_07300at 1687.146 kb on + strand, within CA264_07300at 1687.146 kb on + strand, within CA264_07300at 1687.148 kb on + strand, within CA264_07300at 1687.184 kb on - strand, within CA264_07300at 1687.219 kb on + strand, within CA264_07300at 1687.301 kb on + strand, within CA264_07300at 1687.302 kb on - strand, within CA264_07300at 1687.444 kb on + strand, within CA264_07300at 1687.451 kb on + strand, within CA264_07300at 1687.479 kb on + strand, within CA264_07300at 1687.505 kb on - strand, within CA264_07300at 1687.561 kb on - strand, within CA264_07300at 1687.718 kb on + strand, within CA264_07300at 1687.718 kb on + strand, within CA264_07300at 1687.718 kb on + strand, within CA264_07300at 1687.729 kb on - strand, within CA264_07300at 1687.729 kb on - strand, within CA264_07300at 1687.734 kb on + strand, within CA264_07300at 1687.744 kb on + strand, within CA264_07300at 1687.745 kb on - strand, within CA264_07300at 1687.825 kb on + strandat 1687.834 kb on + strandat 1687.855 kb on - strandat 1687.857 kb on - strandat 1687.921 kb on - strandat 1687.934 kb on - strandat 1687.979 kb on - strandat 1687.996 kb on - strandat 1687.996 kb on - strandat 1687.999 kb on + strandat 1688.000 kb on - strandat 1688.000 kb on - strandat 1688.081 kb on + strandat 1688.082 kb on - strandat 1688.082 kb on - strandat 1688.082 kb on - strandat 1688.124 kb on + strandat 1688.124 kb on + strandat 1688.124 kb on + strandat 1688.124 kb on + strandat 1688.124 kb on + strandat 1688.125 kb on - strandat 1688.125 kb on - strandat 1688.126 kb on + strandat 1688.257 kb on - strand, within CA264_07305at 1688.311 kb on - strand, within CA264_07305at 1688.448 kb on + strand, within CA264_07305at 1688.449 kb on - strand, within CA264_07305at 1688.449 kb on - strand, within CA264_07305at 1688.490 kb on + strand, within CA264_07305at 1688.491 kb on - strand, within CA264_07305at 1688.611 kb on + strand, within CA264_07305at 1688.628 kb on - strand, within CA264_07305at 1688.694 kb on + strand, within CA264_07305at 1688.694 kb on + strand, within CA264_07305at 1688.694 kb on + strand, within CA264_07305at 1688.904 kb on - strand, within CA264_07305at 1688.904 kb on - strand, within CA264_07305at 1688.967 kb on + strand, within CA264_07305at 1688.968 kb on - strand, within CA264_07305at 1689.014 kb on - strand, within CA264_07305at 1689.074 kb on + strand, within CA264_07305at 1689.159 kb on + strand, within CA264_07305at 1689.159 kb on + strand, within CA264_07305at 1689.160 kb on - strand, within CA264_07305at 1689.204 kb on + strandat 1689.227 kb on + strandat 1689.278 kb on - strandat 1689.302 kb on + strandat 1689.309 kb on - strandat 1689.314 kb on + strandat 1689.332 kb on + strandat 1689.359 kb on + strandat 1689.365 kb on + strandat 1689.365 kb on + strandat 1689.366 kb on - strandat 1689.366 kb on - strandat 1689.366 kb on - strandat 1689.368 kb on - strandat 1689.368 kb on - strandat 1689.416 kb on + strandat 1689.416 kb on + strandat 1689.416 kb on + strandat 1689.417 kb on - strandat 1689.420 kb on + strandat 1689.446 kb on + strandat 1689.453 kb on - strandat 1689.464 kb on - strandat 1689.628 kb on + strand, within CA264_07310at 1689.628 kb on + strand, within CA264_07310at 1689.628 kb on + strand, within CA264_07310at 1689.895 kb on + strand, within CA264_07310at 1689.905 kb on + strand, within CA264_07310at 1689.905 kb on + strand, within CA264_07310at 1689.905 kb on + strand, within CA264_07310at 1689.906 kb on - strand, within CA264_07310at 1689.906 kb on - strand, within CA264_07310at 1689.906 kb on - strand, within CA264_07310at 1689.958 kb on - strand, within CA264_07310at 1689.980 kb on - strand, within CA264_07310at 1690.107 kb on + strand, within CA264_07310at 1690.113 kb on + strand, within CA264_07310at 1690.113 kb on + strand, within CA264_07310at 1690.114 kb on - strand, within CA264_07310at 1690.151 kb on + strand, within CA264_07310at 1690.178 kb on + strand, within CA264_07310at 1690.197 kb on - strand, within CA264_07310at 1690.197 kb on - strand, within CA264_07310at 1690.211 kb on + strand, within CA264_07310at 1690.211 kb on + strand, within CA264_07310at 1690.211 kb on + strand, within CA264_07310at 1690.211 kb on + strand, within CA264_07310at 1690.212 kb on - strand, within CA264_07310at 1690.212 kb on - strand, within CA264_07310at 1690.310 kb on - strand, within CA264_07310at 1690.319 kb on + strand, within CA264_07310

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 100 mM
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1,687,070 + CA264_07300 0.29 +0.3
1,687,071 - CA264_07300 0.29 +0.2
1,687,071 - CA264_07300 0.29 +0.3
1,687,142 - CA264_07300 0.36 -0.1
1,687,146 + CA264_07300 0.36 +0.5
1,687,146 + CA264_07300 0.36 +0.3
1,687,148 + CA264_07300 0.36 -0.7
1,687,184 - CA264_07300 0.39 +0.1
1,687,219 + CA264_07300 0.42 +0.1
1,687,301 + CA264_07300 0.50 -0.6
1,687,302 - CA264_07300 0.50 -1.0
1,687,444 + CA264_07300 0.63 -0.2
1,687,451 + CA264_07300 0.63 -0.4
1,687,479 + CA264_07300 0.66 -0.3
1,687,505 - CA264_07300 0.68 -0.2
1,687,561 - CA264_07300 0.73 +0.1
1,687,718 + CA264_07300 0.87 -1.6
1,687,718 + CA264_07300 0.87 -0.1
1,687,718 + CA264_07300 0.87 -0.1
1,687,729 - CA264_07300 0.88 -0.4
1,687,729 - CA264_07300 0.88 +0.8
1,687,734 + CA264_07300 0.89 -0.3
1,687,744 + CA264_07300 0.90 -0.1
1,687,745 - CA264_07300 0.90 -0.2
1,687,825 + +1.5
1,687,834 + +0.1
1,687,855 - -0.2
1,687,857 - -0.4
1,687,921 - -0.3
1,687,934 - -0.1
1,687,979 - +0.7
1,687,996 - -0.8
1,687,996 - +0.5
1,687,999 + -0.6
1,688,000 - -1.1
1,688,000 - +1.2
1,688,081 + -0.7
1,688,082 - -0.9
1,688,082 - +0.6
1,688,082 - -0.3
1,688,124 + -0.9
1,688,124 + +0.1
1,688,124 + +0.5
1,688,124 + -0.3
1,688,124 + +0.0
1,688,125 - -0.0
1,688,125 - -0.3
1,688,126 + -0.7
1,688,257 - CA264_07305 0.16 +0.0
1,688,311 - CA264_07305 0.20 -0.6
1,688,448 + CA264_07305 0.31 -1.2
1,688,449 - CA264_07305 0.31 +0.9
1,688,449 - CA264_07305 0.31 -0.4
1,688,490 + CA264_07305 0.34 -1.5
1,688,491 - CA264_07305 0.34 -0.3
1,688,611 + CA264_07305 0.44 -0.5
1,688,628 - CA264_07305 0.45 -0.4
1,688,694 + CA264_07305 0.50 -0.0
1,688,694 + CA264_07305 0.50 +1.0
1,688,694 + CA264_07305 0.50 -1.3
1,688,904 - CA264_07305 0.67 +0.3
1,688,904 - CA264_07305 0.67 -0.4
1,688,967 + CA264_07305 0.72 +0.1
1,688,968 - CA264_07305 0.72 -0.4
1,689,014 - CA264_07305 0.75 -1.4
1,689,074 + CA264_07305 0.80 -0.3
1,689,159 + CA264_07305 0.87 -0.5
1,689,159 + CA264_07305 0.87 +0.1
1,689,160 - CA264_07305 0.87 +0.4
1,689,204 + +0.1
1,689,227 + -0.2
1,689,278 - -0.1
1,689,302 + -0.5
1,689,309 - +0.4
1,689,314 + +0.8
1,689,332 + +0.9
1,689,359 + +0.2
1,689,365 + +0.6
1,689,365 + -0.1
1,689,366 - +0.3
1,689,366 - -0.3
1,689,366 - +1.4
1,689,368 - -1.5
1,689,368 - -0.9
1,689,416 + +0.4
1,689,416 + +0.1
1,689,416 + -0.7
1,689,417 - -0.4
1,689,420 + +0.6
1,689,446 + +0.3
1,689,453 - +0.3
1,689,464 - -0.9
1,689,628 + CA264_07310 0.18 -0.1
1,689,628 + CA264_07310 0.18 +0.0
1,689,628 + CA264_07310 0.18 -1.3
1,689,895 + CA264_07310 0.39 -0.2
1,689,905 + CA264_07310 0.40 -0.5
1,689,905 + CA264_07310 0.40 +0.8
1,689,905 + CA264_07310 0.40 -0.0
1,689,906 - CA264_07310 0.40 +0.1
1,689,906 - CA264_07310 0.40 +0.3
1,689,906 - CA264_07310 0.40 +1.4
1,689,958 - CA264_07310 0.44 -0.4
1,689,980 - CA264_07310 0.45 +0.2
1,690,107 + CA264_07310 0.56 +0.5
1,690,113 + CA264_07310 0.56 +1.1
1,690,113 + CA264_07310 0.56 +0.0
1,690,114 - CA264_07310 0.56 +0.3
1,690,151 + CA264_07310 0.59 -0.2
1,690,178 + CA264_07310 0.61 +0.2
1,690,197 - CA264_07310 0.63 +0.5
1,690,197 - CA264_07310 0.63 +0.2
1,690,211 + CA264_07310 0.64 +0.1
1,690,211 + CA264_07310 0.64 -0.5
1,690,211 + CA264_07310 0.64 +0.7
1,690,211 + CA264_07310 0.64 +0.0
1,690,212 - CA264_07310 0.64 +0.3
1,690,212 - CA264_07310 0.64 -0.1
1,690,310 - CA264_07310 0.72 +0.4
1,690,319 + CA264_07310 0.72 +0.6

Or see this region's nucleotide sequence