Strain Fitness in Agrobacterium fabrum C58 around Atu6189

Experiment: L-Alanine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu6186 and Atu6188 are separated by 451 nucleotidesAtu6188 and Atu6189 are separated by 115 nucleotidesAtu6189 and Atu6190 are separated by 13 nucleotides Atu6186: Atu6186 - virA/G regulated protein, at 204,666 to 205,232 Atu6186 Atu6188: Atu6188 - virA/G regulated protein, at 205,684 to 205,935 Atu6188 Atu6189: Atu6189 - protein secretion chaperone, at 206,051 to 206,242 Atu6189 Atu6190: Atu6190 - exported virulence protein, at 206,256 to 207,926 Atu6190 Position (kb) 206 207Strain fitness (log2 ratio) -2 -1 0 1 2 3at 205.097 kb on + strand, within Atu6186at 205.136 kb on + strand, within Atu6186at 205.170 kb on - strand, within Atu6186at 205.209 kb on - strandat 205.227 kb on - strandat 205.245 kb on - strandat 205.250 kb on - strandat 205.257 kb on - strandat 205.273 kb on - strandat 205.290 kb on - strandat 205.308 kb on - strandat 205.355 kb on + strandat 205.355 kb on + strandat 205.363 kb on - strandat 205.365 kb on - strandat 205.379 kb on + strandat 205.388 kb on - strandat 205.402 kb on - strandat 205.403 kb on + strandat 205.403 kb on + strandat 205.421 kb on - strandat 205.428 kb on + strandat 205.689 kb on - strandat 205.689 kb on - strandat 205.712 kb on + strand, within Atu6188at 205.719 kb on - strand, within Atu6188at 205.760 kb on + strand, within Atu6188at 205.765 kb on + strand, within Atu6188at 205.787 kb on - strand, within Atu6188at 205.866 kb on + strand, within Atu6188at 205.872 kb on + strand, within Atu6188at 205.877 kb on + strand, within Atu6188at 205.885 kb on - strand, within Atu6188at 205.887 kb on + strand, within Atu6188at 205.890 kb on - strand, within Atu6188at 205.895 kb on - strand, within Atu6188at 205.900 kb on - strand, within Atu6188at 205.901 kb on + strand, within Atu6188at 205.902 kb on + strand, within Atu6188at 205.907 kb on + strand, within Atu6188at 205.908 kb on - strand, within Atu6188at 205.917 kb on + strandat 205.944 kb on - strandat 205.981 kb on + strandat 205.989 kb on - strandat 205.989 kb on - strandat 205.989 kb on - strandat 205.989 kb on - strandat 205.991 kb on + strandat 205.999 kb on - strandat 206.000 kb on - strandat 206.080 kb on + strand, within Atu6189at 206.204 kb on - strand, within Atu6189at 206.359 kb on + strandat 206.378 kb on + strandat 206.386 kb on - strandat 206.410 kb on + strandat 206.502 kb on + strand, within Atu6190at 206.514 kb on + strand, within Atu6190at 206.514 kb on + strand, within Atu6190at 206.522 kb on - strand, within Atu6190at 206.522 kb on - strand, within Atu6190at 206.522 kb on - strand, within Atu6190at 206.549 kb on + strand, within Atu6190at 206.581 kb on + strand, within Atu6190at 206.589 kb on - strand, within Atu6190at 206.589 kb on - strand, within Atu6190at 206.596 kb on + strand, within Atu6190at 206.630 kb on + strand, within Atu6190at 206.662 kb on - strand, within Atu6190at 206.705 kb on + strand, within Atu6190at 206.708 kb on + strand, within Atu6190at 206.708 kb on + strand, within Atu6190at 206.731 kb on + strand, within Atu6190at 206.737 kb on - strand, within Atu6190at 206.744 kb on + strand, within Atu6190at 206.792 kb on - strand, within Atu6190at 206.805 kb on - strand, within Atu6190at 206.816 kb on + strand, within Atu6190at 206.876 kb on - strand, within Atu6190at 206.876 kb on - strand, within Atu6190at 206.944 kb on + strand, within Atu6190at 206.959 kb on - strand, within Atu6190at 206.964 kb on - strand, within Atu6190at 207.014 kb on + strand, within Atu6190at 207.024 kb on + strand, within Atu6190at 207.123 kb on - strand, within Atu6190at 207.150 kb on - strand, within Atu6190at 207.211 kb on - strand, within Atu6190at 207.220 kb on + strand, within Atu6190at 207.225 kb on + strand, within Atu6190at 207.225 kb on + strand, within Atu6190at 207.225 kb on + strand, within Atu6190at 207.230 kb on + strand, within Atu6190at 207.233 kb on - strand, within Atu6190at 207.233 kb on - strand, within Atu6190at 207.235 kb on + strand, within Atu6190

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
remove
205,097 + Atu6186 0.76 +0.1
205,136 + Atu6186 0.83 -0.3
205,170 - Atu6186 0.89 +0.3
205,209 - -0.7
205,227 - +0.0
205,245 - +0.4
205,250 - -0.5
205,257 - +0.0
205,273 - -0.6
205,290 - -0.1
205,308 - -0.8
205,355 + -0.2
205,355 + -0.1
205,363 - -0.5
205,365 - -2.0
205,379 + +0.8
205,388 - +1.3
205,402 - +0.4
205,403 + -0.3
205,403 + +1.1
205,421 - +1.3
205,428 + +0.0
205,689 - -0.2
205,689 - +0.5
205,712 + Atu6188 0.11 -0.2
205,719 - Atu6188 0.14 +1.3
205,760 + Atu6188 0.30 -0.1
205,765 + Atu6188 0.32 -0.5
205,787 - Atu6188 0.41 +1.3
205,866 + Atu6188 0.72 -0.5
205,872 + Atu6188 0.75 -0.3
205,877 + Atu6188 0.77 -0.2
205,885 - Atu6188 0.80 -0.5
205,887 + Atu6188 0.81 -0.7
205,890 - Atu6188 0.82 +0.3
205,895 - Atu6188 0.84 -1.0
205,900 - Atu6188 0.86 +0.5
205,901 + Atu6188 0.86 +0.3
205,902 + Atu6188 0.87 -0.1
205,907 + Atu6188 0.88 -0.0
205,908 - Atu6188 0.89 -0.1
205,917 + -0.1
205,944 - -0.3
205,981 + +0.8
205,989 - -1.3
205,989 - +0.6
205,989 - +0.3
205,989 - +0.0
205,991 + +0.4
205,999 - +0.1
206,000 - +0.1
206,080 + Atu6189 0.15 -2.4
206,204 - Atu6189 0.80 -0.7
206,359 + +0.1
206,378 + -0.4
206,386 - -0.4
206,410 + -1.0
206,502 + Atu6190 0.15 -0.3
206,514 + Atu6190 0.15 -0.9
206,514 + Atu6190 0.15 -0.2
206,522 - Atu6190 0.16 +0.9
206,522 - Atu6190 0.16 -0.9
206,522 - Atu6190 0.16 -0.3
206,549 + Atu6190 0.18 -0.3
206,581 + Atu6190 0.19 +0.4
206,589 - Atu6190 0.20 +0.9
206,589 - Atu6190 0.20 -0.1
206,596 + Atu6190 0.20 -0.7
206,630 + Atu6190 0.22 -0.1
206,662 - Atu6190 0.24 -0.5
206,705 + Atu6190 0.27 +0.3
206,708 + Atu6190 0.27 -0.1
206,708 + Atu6190 0.27 -0.6
206,731 + Atu6190 0.28 +0.6
206,737 - Atu6190 0.29 +2.9
206,744 + Atu6190 0.29 -0.3
206,792 - Atu6190 0.32 +0.3
206,805 - Atu6190 0.33 +2.3
206,816 + Atu6190 0.34 -0.0
206,876 - Atu6190 0.37 +0.4
206,876 - Atu6190 0.37 -0.5
206,944 + Atu6190 0.41 +0.3
206,959 - Atu6190 0.42 +0.3
206,964 - Atu6190 0.42 -1.9
207,014 + Atu6190 0.45 -0.9
207,024 + Atu6190 0.46 -1.7
207,123 - Atu6190 0.52 +0.2
207,150 - Atu6190 0.54 -0.8
207,211 - Atu6190 0.57 +1.3
207,220 + Atu6190 0.58 -0.2
207,225 + Atu6190 0.58 +1.9
207,225 + Atu6190 0.58 -0.4
207,225 + Atu6190 0.58 +0.0
207,230 + Atu6190 0.58 -0.6
207,233 - Atu6190 0.58 -0.3
207,233 - Atu6190 0.58 +0.3
207,235 + Atu6190 0.59 +1.0

Or see this region's nucleotide sequence